M. Tekpinar

发表

using an interpolated elastic network model

Wenjun Zheng, M. Tekpinar, 2010 .

Predicting order of conformational changes during protein conformational transitions using an interpolated elastic network model

Wenjun Zheng, Mustafa Tekpinar, Wenjun Zheng, 2010, Proteins.

Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model

Mustafa Tekpinar, Wenjun Zheng, Wenjun Zheng, 2009, BMC Structural Biology.

Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.

Mustafa Tekpinar, Wenjun Zheng, Wenjun Zheng, 2011, Biophysical journal.

Coarse‐grained and all‐atom modeling of structural states and transitions in hemoglobin

Wenjun Zheng, M. Tekpinar, 2013, Proteins.

Flexible fitting to cryo-electron microscopy maps with coarse-grained elastic network models

M. Tekpinar, 2018 .

Structural evidence for an in trans base selection mechanism involving Loop1 in polymerase μ at an NHEJ double-strand break junction

M. Lieber, M. Delarue, M. Tekpinar, 2019, The Journal of Biological Chemistry.

Molecular dynamics study of the effect of active site protonation on Helicobacter pylori 5′-methylthioadenosine/S-adenosylhomocysteine nucleosidase

M. Tekpinar, T. Wassenaar, A. Yildirim, 2015, European Biophysics Journal.

Building Quantitative Bridges between Dynamics and Sequences of SARS-CoV-2 Main Protease and a Diverse Set of Thirty-Two Proteins

M. Tekpinar, A. Yildirim, 2022, J. Chem. Inf. Model..

Analysis of protein conformational transitions using elastic network model.

Wenjun Zheng, M. Tekpinar, 2014, Methods in molecular biology.

Structure-based simulations of the translocation mechanism of the hepatitis C virus NS3 helicase along single-stranded nucleic acid.

Wenjun Zheng, M. Tekpinar, 2012, Biophysical journal.

Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus

Marc Delarue, Mustafa Tekpinar, Bertrand Néron, 2021, J. Chem. Inf. Model..

Competing Roles of Ca2+ and Nonmuscle Myosin IIA on the Dynamics of the Metastasis-Associated Protein S100A4.

M. Tekpinar, T. Wassenaar, A. Yildirim, 2021, The journal of physical chemistry. B.

Impact of dimerization and N3 binding on molecular dynamics of SARS-CoV and SARS-CoV-2 main proteases

M. Tekpinar, A. Yildirim, 2021, Journal of biomolecular structure & dynamics.

Molecular dynamics investigation of Helicobacter pylori chemotactic protein CheY1 and two mutants

M. Tekpinar, T. Wassenaar, A. Yildirim, 2014, Journal of Molecular Modeling.

Steered Molecular Dynamics Simulations of Coumarin2 5Z/5E Pulling Reveal Different Interaction Profiles for Four Human Cytosolic Carbonic Anhydrases

Mustafa Tekpinar, M. Tekpinar, 2018 .

How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA

M. Delarue, M. Tekpinar, Pierre Legrand, 2021, Nature Communications.

High-resolution modeling of protein structures based on flexible fitting of low-resolution structural data.

Mustafa Tekpinar, Wenjun Zheng, Wenjun Zheng, 2014, Advances in protein chemistry and structural biology.

Opening mechanism of adenylate kinase can vary according to selected molecular dynamics force field

Ahmet Yildirim, Mustafa Tekpinar, Hulya Unan, 2015, Journal of Computer-Aided Molecular Design.

Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution

Vitor B. Pinheiro, M. Delarue, J. Rozenski, 2020, Biomolecules.

Molecular dynamics study of the effect of active site protonation on Helicobacter pylori 5′-methylthioadenosine/S-adenosylhomocysteine nucleosidase

M. Tekpinar, T. Wassenaar, A. Yildirim, 2015, European Biophysics Journal.

Unzipping of neuronal snare protein with steered molecular dynamics occurs in three steps

Wenjun Zheng, M. Tekpinar, 2014, Journal of Molecular Modeling.

Only a Subset of Normal Modes is Sufficient to Identify Linear Correlations in Proteins

Ahmet Yildirim, Mustafa Tekpinar, M. Tekpinar, 2018, J. Chem. Inf. Model..

Structural evidence for an in trans base selection mechanism involving Loop1 in polymerase (cid:2) at an NHEJ double-strand break junction

M. Tekpinar, Sandrine Rosario, J. Loc’h, 2019 .