D. Mohanty

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Getting Phosphorylated: Is it Necessary to be Solvent Accessible ?

Narendra Kumar, N. Damle, D. Mohanty, 2015 .

DATABASES DEVELOPED IN INDIA FOR BIOLOGICAL SCIENCES

D. Mohanty, G. Yadav, 2017 .

Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria

Rajesh S. Gokhale, Debasisa Mohanty, V. Sridharan, 2004, Nature.

Dissecting the Functional Role of Polyketide Synthases in Dictyostelium discoideum

Debasisa Mohanty, D. Mohanty, S. Saran, 2008, Journal of Biological Chemistry.

Prediction of inter domain interactions in modular polyketide synthases by docking and correlated mutation analysis

D. Mohanty, G. Yadav, S. Anand, 2013, Journal of biomolecular structure & dynamics.

Modeling holo-ACP:DH and holo-ACP:KR complexes of modular polyketide synthases: a docking and molecular dynamics study

D. Mohanty, S. Anand, 2012, BMC Structural Biology.

In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites

Rajesh S. Gokhale, Debasisa Mohanty, Jyoti Sharma, 2008, BMC Bioinformatics.

In silico identification of AMPylating enzymes and study of their divergent evolution

D. Mohanty, Shradha Khater, 2015, Scientific Reports.

Versatility of polyketide synthases in generating metabolic diversity.

Debasisa Mohanty, Rajan Sankaranarayanan, D. Mohanty, 2007, Current opinion in structural biology.

Structure-based identification of MHC binding peptides: Benchmarking of prediction accuracy.

Narendra Kumar, D. Mohanty, 2010, Molecular bioSystems.

Molecular Dynamics Simulations for Deciphering the Structural Basis of Recognition of Pre-let-7 miRNAs by LIN28.

D. Mohanty, Chhaya Sharma, 2017, Biochemistry.

Role of glycosylation in structure and stability of Erythrina corallodendron lectin (EcorL): A molecular dynamics study

A. Surolia, D. Mohanty, S. Kaushik, 2011, Protein science : a publication of the Protein Society.

Novel insights into the regulation of malarial calcium‐dependent protein kinase 1

D. Mohanty, R. Hui, Anwar Ahmed, 2012, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Deciphering evolution of immune recognition in antibodies

D. Mohanty, D. Salunke, H. Kaur, 2018, BMC Structural Biology.

Two Functionally Distinctive Phosphopantetheinyl Transferases from Amoeba Dictyostelium discoideum

D. Mohanty, S. Saran, R. Gokhale, 2011, PloS one.

Kupyaphores are zinc homeostatic metallophores required for colonization of Mycobacterium tuberculosis

Vivek T. Natarajan, D. Mohanty, M. Faruq, 2022, Proceedings of the National Academy of Sciences.

Deciphering the Molecular Basis of Functional Divergence in AMPylating Enzymes by Molecular Dynamics Simulations and Structure Guided Phylogeny.

D. Mohanty, Shradha Khater, 2015, Biochemistry.

Genome-Wide Search for Eliminylating Domains Reveals Novel Function for BLES03-Like Proteins

D. Mohanty, Shradha Khater, 2014, Genome biology and evolution.

Pf-Phospho: a machine learning-based phosphorylation sites prediction tool for Plasmodium proteins

D. Mohanty, S. Venkadesan, Priya Gupta, 2022, Briefings Bioinform..

Retrobiosynthetic Approach Delineates the Biosynthetic Pathway and the Structure of the Acyl Chain of Mycobacterial Glycopeptidolipids*

Anil Kumar Singh, D. Mohanty, Madhu Sudhan Ravindran, 2012, The Journal of Biological Chemistry.

Allosteric regulation of the inactive to active state conformational transition in CDPK1 protein of Plasmodium falciparum.

D. Mohanty, Priya Gupta, 2022, International journal of biological macromolecules.

novPTMenzy: a database for enzymes involved in novel post-translational modifications

Debasisa Mohanty, Shradha Khater, D. Mohanty, 2015, Database J. Biol. Databases Curation.

Probing the role of local propensity in peptide turn formation

R. Elber, D. Thirumalai, D. Mohanty, 2000 .

Respiratory Quinone Switches from Menaquinone to Polyketide Quinone during the Development Cycle in Streptomyces sp. Strain MNU77

D. Mohanty, R. Gokhale, Rakesh Sharma, 2022, Microbiology spectrum.

Kupyaphores are counter regulatory zinc homeostatic metallophores required for Mycobacterium tuberculosis colonization

Vivek T. Natarajan, D. Mohanty, M. Faruq, 2021 .

SBSPKS: structure based sequence analysis of polyketide synthases

Gitanjali Yadav, Debasisa Mohanty, Narendra Kumar, 2010, Nucleic Acids Res..

Computational approach for prediction of domain organization and substrate specificity of modular polyketide synthases.

Gitanjali Yadav, Debasisa Mohanty, D. Mohanty, 2003, Journal of molecular biology.

Promiscuous fatty acyl CoA ligases produce acyl-CoA and acyl-SNAC precursors for polyketide biosynthesis.

D. Mohanty, P. Arora, R. Gokhale, 2005, Journal of the American Chemical Society.

Versatile polyketide enzymatic machinery for the biosynthesis of complex mycobacterial lipids.

D. Mohanty, R. Gokhale, P. Saxena, 2007, Natural product reports.

Conformational polymorphism in telomeric structures: Loop orientation and interloop pairing in d(G4TnG4)

M. Bansal, D. Mohanty, 1994, Biopolymers.

Hairpin and parallel quartet structures for telomeric sequences.

M. Bansal, S. Brahmachari, V. Sasisekharan, 1992, Nucleic acids research.

Structure-Based Multiscale Approach for Identification of Interaction Partners of PDZ Domains

Debasisa Mohanty, Garima Tiwari, D. Mohanty, 2014, J. Chem. Inf. Model..

RECQL4 is essential for the transport of p53 to mitochondria in normal human cells in the absence of exogenous stress

N. Lindor, D. Mohanty, S. Sengupta, 2012, Journal of Cell Science.

RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways

Deepak Sharma, Debasisa Mohanty, Avadhesha Surolia, 2009, Nucleic Acids Res..

Sequence- and structure-based analysis of proteins involved in miRNA biogenesis

D. Mohanty, Chhaya Sharma, 2018, Journal of biomolecular structure & dynamics.

Chk1-Dependent Constitutive Phosphorylation of BLM Helicase at Serine 646 Decreases after DNA Damage

D. Mohanty, S. Sengupta, R. Mudgal, 2010, Molecular Cancer Research.

Mechanistic and functional insights into fatty acid activation in Mycobacterium tuberculosis

Priyanka Verma, Rajesh S. Gokhale, Debasisa Mohanty, 2009, Nature chemical biology.

Towards Prediction of Metabolic Products of Polyketide Synthases: An In Silico Analysis

Gitanjali Yadav, Rajesh S. Gokhale, Debasisa Mohanty, 2009, PLoS Comput. Biol..

SEARCHPKS: a program for detection and analysis of polyketide synthase domains

Gitanjali Yadav, Rajesh S. Gokhale, Debasisa Mohanty, 2003, Nucleic Acids Res..

Mechanism of autophosphorylation of mycobacterial PknB explored by molecular dynamics simulations.

N. Damle, D. Mohanty, 2014, Biochemistry.

RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links

Debasisa Mohanty, Shradha Khater, Money Gupta, 2017, Nucleic Acids Res..

Deciphering kinase-substrate relationships by analysis of domain-specific phosphorylation network

Debasisa Mohanty, Nikhil Prakash Damle, N. Damle, 2014, Bioinform..

Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials

Debasisa Mohanty, Narendra Kumar, Narendra Kumar, 2010, Bioinform..

The role of metal ions in substrate recognition and stability of concanavalin A: a molecular dynamics study.

A. Surolia, D. Mohanty, S. Kaushik, 2009, Biophysical journal.

NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases

Gitanjali Yadav, Rajesh S. Gokhale, Debasisa Mohanty, 2004, Nucleic Acids Res..

MODPROPEP: a program for knowledge-based modeling of protein–peptide complexes

Debasisa Mohanty, Narendra Kumar, Narendra Kumar, 2007, Nucleic Acids Res..

A genetic locus required for iron acquisition in Mycobacterium tuberculosis

D. Mohanty, R. Gokhale, M. Z. Ansari, 2006, Proceedings of the National Academy of Sciences of the United States of America.

A New Family of Type III Polyketide Synthases in Mycobacterium tuberculosis*

Gitanjali Yadav, Debasisa Mohanty, D. Mohanty, 2003, Journal of Biological Chemistry.

De novo simulations of the folding thermodynamics of the GCN4 leucine zipper.

J. Skolnick, A. Kolinski, J. Skolnick, 1999, Biophysical journal.

Correlation between knowledge‐based and detailed atomic potentials: Application to the unfolding of the GCN4 leucine zipper

A Kolinski, J Skolnick, C L Brooks, 1999, Proteins.

Molecular Dynamics Simulations on Pars Intercerebralis Major Peptide-C (PMP-C) Reveal the Role of Glycosylation and Disulfide Bonds in its Enhanced Structural Stability and Function

A. Surolia, D. Mohanty, S. Kaushik, 2012, Journal of biomolecular structure & dynamics.

Chain folding and A:T pairing in human telomeric DNA: a model-building and molecular dynamics study.

M. Bansal, D. Mohanty, 1995, Biophysical journal.

Understanding the molecular basis of substrate binding specificity of PTB domains

D. Mohanty, Garima Tiwari, Neetu Sain, 2016, Scientific Reports.

In silico methods for linking genes and secondary metabolites: The way forward

Debasisa Mohanty, Shradha Khater, D. Mohanty, 2016, Synthetic and systems biotechnology.

Fatty acyl-AMP ligases and polyketide synthases are unique enzymes of lipid biosynthetic machinery in Mycobacterium tuberculosis.

D. Mohanty, R. Sankaranarayanan, R. Gokhale, 2011, Tuberculosis.

Computational Methods for Identification of Novel Secondary Metabolite Biosynthetic Pathways by Genome Analysis

Debasisa Mohanty, Swadha Anand, D. Mohanty, 2011, Handbook of Research on Computational and Systems Biology.

Novel Intermolecular Iterative Mechanism for Biosynthesis of Mycoketide Catalyzed by a Bimodular Polyketide Synthase

Gitanjali Yadav, Debasisa Mohanty, Srijita Banerjee, 2008, PLoS biology.

Genome scale prediction of substrate specificity for acyl adenylate superfamily of enzymes based on active site residue profiles

Pankaj Khurana, Rajesh S. Gokhale, Debasisa Mohanty, 2010, BMC Bioinformatics.

LipidII interaction with specific residues of Mycobacterium tuberculosis PknB extracytoplasmic domain governs its optimal activation

D. Saini, N. Damle, D. Mohanty, 2019, Nature Communications.

Dissecting the mechanism and assembly of a complex virulence mycobacterial lipid.

Mohd Zeeshan Ansari, Debasisa Mohanty, Archana Vats, 2005, Molecular cell.

Corrigendum: Enzymic activation and transfer of fatty acids and acyl-adenylates in mycobacteria

V. Sridharan, D. Mohanty, P. Arora, 2004, Nature.

PAR-3D: a server to predict protein active site residues

Kshama Goyal, Debasisa Mohanty, Shekhar C. Mande, 2007, Nucleic Acids Res..

A machine learning-based method for prediction of macrocyclization patterns of polyketides and non-ribosomal peptides

Debasisa Mohanty, Priyesh Agrawal, D. Mohanty, 2020, Bioinform..

SEARCHGTr: a program for analysis of glycosyltransferases involved in glycosylation of secondary metabolites

Rajesh S. Gokhale, Debasisa Mohanty, Pankaj Kamra, 2005, Nucleic Acids Res..

LipidII interaction with specific residues of Mycobacterium tuberculosis PknB extracytoplasmic domain governs its optimal activation

D. Saini, N. Damle, D. Mohanty, 2019, Nature Communications.

Conformational polymorphism in G-tetraplex structures: strand reversal by base flipover or sugar flipover.

M. Bansal, D. Mohanty, 1993, Nucleic acids research.

Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water.

R Elber, R. Elber, D. Beglov, 1997, Journal of molecular biology.

An In Silico Analysis of the Binding Modes and Binding Affinities of Small Molecule Modulators of PDZ-Peptide Interactions

D. Mohanty, Garima Tiwari, 2013, PloS one.

De Novo Predictions of the Quaternary Structure of Leucine Zippers and Other Coiled Coils

J. Skolnick, A. Kolinski, D. Mohanty, 1999 .

RiPPMiner-Genome: A Web Resource for Automated Prediction of Crosslinked Chemical Structures of RiPPs by Genome Mining.

Debasisa Mohanty, Priyesh Agrawal, Sana Amir, 2021, Journal of molecular biology.

Respiratory Quinone Switches from Menaquinone to Polyketide Quinone during the Development Cycle in Streptomyces sp. Strain MNU77

Vivek T. Natarajan, D. Mohanty, R. Gokhale, 2022, Microbiology spectrum.

SMMPPI: a machine learning-based approach for prediction of modulators of protein–protein interactions and its application for identification of novel inhibitors for RBD:hACE2 interactions in SARS-CoV-2

D. Mohanty, Priya Gupta, 2021, Briefings Bioinform..

Development of a Novel Pharmacophore Model Guided by the Ensemble of Waters and Small Molecule Fragments Bound to SARS‐CoV‐2 Main Protease

D. Mohanty, Pawan Kumar, 2021, Molecular informatics.

SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases

Priya Gupta, Debasisa Mohanty, Shradha Khater, 2017, Nucleic Acids Res..

Structural basis of internal peptide recognition by PDZ domains using molecular dynamics simulations

D. Mohanty, Neetu Sain, 2019, bioRxiv.

SBSPKSv 2 : structure-based sequence analysis of polyketide synthases and nonribosomal peptide synthetases

Debasisa Mohanty, Shradha Khater, Narendra Kumar, 2017 .

modPDZpep: a web resource for structure based analysis of human PDZ-mediated interaction networks

Debasisa Mohanty, Neetu Sain, D. Mohanty, 2016, Biology Direct.

Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials

Narendra Kumar, D. Mohanty, 2010, Bioinform..

DNA polymorphism and local variation in base-pair orientation: a theoretical rationale.

M. Bansal, D. Mohanty, D Mohanty, 1991, Journal of biomolecular structure & dynamics.

In silico identification of AMPylating enzymes and study of their divergent evolution

D. Mohanty, Shradha Khater, 2015, Scientific Reports.

A hepatocyte-specific transcriptional program driven by Rela and Stat3 exacerbates experimental colitis in mice by modulating bile synthesis

Mohit Yadav, D. Mohanty, V. Ahuja, 2024, bioRxiv.