D. F. Senear

发表

Structures of oncogenic, suppressor and rescued p53 core-domain variants: mechanisms of mutant p53 rescue.

Ying Wang, H. Luecke, B. Wallentine, 2013, Acta crystallographica. Section D, Biological crystallography.

DNase I Footprint Analysis of Protein‐DNA Binding

R. Kingston, M. Brenowitz, D. F. Senear, 1989, Current protocols in molecular biology.

Quantitative DNase footprint titration: a method for studying protein-DNA interactions.

M. A. Shea, G. K. Ackers, M. Brenowitz, 1986, Methods in enzymology.

Pressure dissociation of integration host factor–DNA complexes reveals flexibility-dependent structural variation at the protein–DNA interface

Kimberly A. Aeling, V. Tretyachenko-Ladokhina, D. F. Senear, 2007, Nucleic acids research.

Current status of the molecular structure and function of the plasma sex steroid-binding protein (SBP).

D. F. Senear, F. Stanczyk, P. Pétra, 1983, Journal of steroid biochemistry.

Molecular characterization of the sex steroid binding protein (SBP) of plasma. Re-examination of rabbit SBP and comparison with the human, macaque and baboon proteins.

D. F. Senear, D. Teller, P. Pétra, 1986, Journal of steroid biochemistry.

Determination of binding constants for cooperative site-specific protein-DNA interactions using the gel mobility-shift assay.

M. Brenowitz, D. F. Senear, 1991, The Journal of biological chemistry.

Spectral enhancement of proteins: biological incorporation and fluorescence characterization of 5-hydroxytryptophan in bacteriophage lambda cI repressor.

C. A. Hasselbacher, D. F. Senear, E. Waxman, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Alexa and Oregon Green dyes as fluorescence anisotropy probes for measuring protein-protein and protein-nucleic acid interactions.

V. Tretyachenko-Ladokhina, D. F. Senear, E. Rusinova, 2002, Analytical biochemistry.

Thermodynamics of E. coli cytidine repressor interactions with DNA: distinct modes of binding to different operators suggests a role in differential gene regulation.

V. Tretyachenko-Ladokhina, D. F. Senear, J. Ross, 2002, Journal of molecular biology.

Thermodynamic studies of concanavalin a dimer-tetramer equilibria.

D. F. Senear, D. Teller, 1980, Biophysical journal.

Thermodynamic investigation of monoclonal antibody alkylated nucleoside interaction as a model for epitope recognition on nucleic acids.

D. F. Senear, L. Kan, M. Rajewsky, 1987, Biochemistry.

Proteinase inhibitors I and II from leaves of wounded tomato plants: purification and properties.

D. F. Senear, C. Ryan, G. Plunkett, 1982, Archives of biochemistry and biophysics.

Thermodynamics of concanavalin A dimer-tetramer self-association: sedimentation equilibrium studies.

D. F. Senear, D. Teller, 1981, Biochemistry.

The primary self-assembly reaction of bacteriophage lambda cI repressor dimers is to octamer.

D. F. Senear, T. Laue, E. Waxman, 1993, Biochemistry.

5-hydroxytryptophan as a new intrinsic probe for investigating protein-DNA interactions by analytical ultracentrifugation. Study of the effect of DNA on self-assembly of the bacteriophage lambda cI repressor.

D. F. Senear, T. Laue, J. Ross, 1993, Biochemistry.

[9] Quantitative DNase footprint titration: A method for studying protein-DNA interactions

Donald F. Senear, M. A. Shea, G. K. Ackers, 1986 .

Energetics of cooperative protein-DNA interactions: comparison between quantitative deoxyribonuclease footprint titration and filter binding.

M. A. Shea, G. K. Ackers, M. Brenowitz, 1986, Biochemistry.

Simultaneous analysis for testing of models and parameter estimation.

D. F. Senear, D. Bolen, 1992, Methods in enzymology.

Role of Multiple CytR Binding Sites on Cooperativity, Competition, and Induction at the Escherichia coli udpPromoter*

D. F. Senear, T Nguyen, S A Gavigan, 1999, The Journal of Biological Chemistry.

Analysis of protein and DNA-mediated contributions to cooperative assembly of protein-DNA complexes.

T M Laue, D. F. Senear, T. Laue, 1998, Methods.

Analysis of interactions between CytR and CRP at CytR-regulated promoters.

D. F. Senear, S. Gavigan, L. Perini, 1998, Methods in enzymology.

An aromatic stacking interaction between subunits helps mediate DNA sequence specificity: operator site discrimination by phage lambda cI repressor.

D. F. Senear, E. Rusinova, J. Ross, 1997, Journal of molecular biology.

Quantitative DNase I Footprinting

M. Brenowitz, D. F. Senear, D. Dalma-Weiszhausz, 1993 .

Proton-linked contributions to site-specific interactions of lambda cI repressor and OR.

G. K. Ackers, D. F. Senear, 1990, Biochemistry.

Activation of Gene Expression by a Ligand-induced Conformational Change of a Protein-DNA Complex*

G W Hatfield, G. W. Hatfield, D. F. Senear, 1998, The Journal of Biological Chemistry.

Comparison of operator-specific and nonspecific DNA binding of the lambda cI repressor: [KCl] and pH effects.

R. Batey, D. F. Senear, 1991, Biochemistry.

Pseudointrinsic probes for generating spectrally enhanced proteins and nucleic acids

J. B. Alexander Ross, William R. Laws, C. A. Hasselbacher, 1995, Photonics West.

"Footprint" titrations yield valid thermodynamic isotherms.

M. A. Shea, G. K. Ackers, M. Brenowitz, 1986, Proceedings of the National Academy of Sciences of the United States of America.

Indirect Recognition in Sequence-specific DNA Binding by Escherichia coli Integration Host Factor

G. W. Hatfield, Nicholas R. Steffen, Richard H Lathrop, 2006, Journal of Biological Chemistry.

Multiple conformations of the cytidine repressor DNA-binding domain coalesce to one upon recognition of a specific DNA surface.

V. Tretyachenko-Ladokhina, D. F. Senear, T. Laue, 2011, Biochemistry.

Flexibility and adaptability in binding of E. coli cytidine repressor to different operators suggests a role in differential gene regulation.

V. Tretyachenko-Ladokhina, D. F. Senear, M. Cocco, 2006, Journal of molecular biology.

Effects of saccharide and salt binding on dimer-tetramer equilibrium of concanavalin A.

D. F. Senear, D. Teller, 1981, Biochemistry.

Multiple ion-dependent and substrate-dependent Na+/K+-ATPase conformational states. Transient and steady-state kinetic studies.

S. Bernhard, D. F. Senear, G. Betts, 1985, Biochemistry.

Linkage between operator binding and dimer to octamer self-assembly of bacteriophage lambda cI repressor.

D. F. Senear, T. Laue, E. Rusinova, 1997, Biochemistry.

Role of protein-protein bridging interactions on cooperative assembly of DNA-bound CRP-CytR-CRP complex and regulation of the Escherichia coli CytR regulon.

D. F. Senear, T. Laue, Mayy F. Chahla, 2003, Biochemistry.

Flanking DNA-sequences contribute to the specific binding of cI-repressor and OR1.

G. K. Ackers, M. Brenowitz, D. F. Senear, 1989, Nucleic Acids Research.

The cooperative binding energetics of CytR and cAMP receptor protein support a quantitative model of differential activation and repression of CytR-regulated class III Escherichia coli promoters.

D. F. Senear, A. K. Holt, 2013, Biochemistry.

Molecular mechanisms of functional rescue mediated by P53 tumor suppressor mutations.

Wei Yang, Yu-Hong Tan, R. Luo, 2009, Biophysical chemistry.

Allosteric Mechanism of Induction of CytR-regulated Gene Expression

D. F. Senear, S. Short, C. Barbier, 1997, The Journal of Biological Chemistry.

DNA Deformation Energy as an Indirect Recognition Mechanism in Protein-DNA Interactions

Richard H. Lathrop, G. Wesley Hatfield, G. W. Hatfield, 2007, IEEE/ACM Transactions on Computational Biology and Bioinformatics.