I. Vaisman

发表

Predicting the transactivation activity of p53 missense mutants using a four‐body potential score derived from Delaunay tessellations

Shunsuke Kato, Chikashi Ishioka, Magali Olivier, 2006, Human mutation.

Discrimination of thermophilic and mesophilic proteins

Iosif I Vaisman, Todd J Taylor, T. Taylor, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop.

Modeling the functional consequences of single residue replacements in bacteriophage f1 gene V protein.

E. Mathé, I. Vaisman, M. Masso, 2009, Protein engineering, design & selection : PEDS.

Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro‐fuzzy classifiers

M. Barenboim, I. Vaisman, M. Masso, 2008, Proteins.

Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms.

I. Vaisman, M. Masso, 2010, Journal of theoretical biology.

Statistical geometry approach to the study of functional effects of human nonsynonymous SNPs

M. Barenboim, I. Vaisman, D. Jamison, 2005, Human mutation.

Compositional preferences in quadruplets of nearest neighbor residues in protein structures: statistical geometry analysis

Iosif I. Vaisman, Alexander Tropsha, Weifan Zheng, 1998, Proceedings. IEEE International Joint Symposia on Intelligence and Systems (Cat. No.98EX174).

1 PROPERTIES OF AMINO ACID CONTACT NETWORKS OF DELAUNAY TESSELLATED PROTEIN STRUCTURES

T. Taylor, I. Vaisman, 2008 .

Identifying Zeolite Frameworks with a Machine Learning Approach

Iosif I. Vaisman, Shujiang Yang, Mohammed Lach-hab, 2009 .

Assignment of Framework Types to the Zeolite Crystals in the Inorganic Crystal Structure Database

Estela Blaisten-Barojas, I. Vaisman, M. Lach-hab, 2009, 0904.2597.

Local structural order and molecular associations in water-DMSO mixtures. Molecular dynamics study

M. Berkowitz, I. Vaisman, 1992 .

Comprehensive Mutagenesis of HIV-1 Protease : A Statistical Geometry Approach

I. Vaisman, M. Masso, 2003 .

Neuro-Fuzzy Approach to Classification of Human Non-Synonymous SNPs Based upon Statistical Geometry

M. Barenboim, I. Vaisman, D. Jamison, 2005 .

Cell Surface Expression of CD147/EMMPRIN Is Regulated by Cyclophilin 60*

M. Bukrinsky, K. Nakayama, I. Vaisman, 2005, Journal of Biological Chemistry.

PreciseEdge raster RGB image segmentation algorithm reduces user input for livestock digital body measurements highly correlated to real-world measurements

C. V. Van Tassell, T. Sonstegard, I. Vaisman, 2022, PloS one.

A New Structural Model of Apolipoprotein B100 Based on Computational Modeling and Cross Linking

A. Baranova, A. Remaley, I. Vaisman, 2022, International journal of molecular sciences.

Framework-Type Determination for Zeolite Structures in the Inorganic Crystal Structure Database

Iosif I. Vaisman, Shujiang Yang, Xiang Li, 2010 .

Machine learning approach for structure-based zeolite classification

Iosif I. Vaisman, Shujiang Yang, Mohammed Lach-hab, 2009 .

Structure‐Based Machine Learning Models for Computational Mutagenesis

Iosif I. Vaisman, Majid Masso, I. Vaisman, 2010 .

Accurate prediction of enzyme mutant activity based on a multibody statistical potential

Iosif I. Vaisman, Majid Masso, I. Vaisman, 2007, Bioinform..

AUTO-MUTE: web-based tools for predicting stability changes in proteins due to single amino acid replacements.

Majid Masso, Iosif I Vaisman, I. Vaisman, 2010, Protein engineering, design & selection : PEDS.

Structure-based prediction of protein activity changes: Assessing the impact of single residue replacements

Iosif I. Vaisman, Majid Masso, I. Vaisman, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein

Iosif I. Vaisman, Majid Masso, Kahkeshan Hijazi, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Fitness of unregulated human Ras mutants modeled by implementing computational mutagenesis and machine learning techniques

Iosif I. Vaisman, Majid Masso, Arnav Bansal, 2019, Heliyon.

A structure-based computational mutagenesis elucidates the spectrum of stability-activity relationships in proteins

Iosif I. Vaisman, Majid Masso, I. Vaisman, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Accurate Prediction of Stability Changes in Bacteriophage T4 Lysozyme upon Single Amino Acid Replacements

Iosif I. Vaisman, Majid Masso, Tariq Alsheddi, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine.

Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis

Iosif I. Vaisman, Majid Masso, I. Vaisman, 2008, Bioinform..

Computational mutagenesis studies of protein structure‐function correlations

Majid Masso, Iosif I Vaisman, I. Vaisman, 2006, Proteins.

Sequence and structure based models of HIV-1 protease and reverse transcriptase drug resistance

I. Vaisman, M. Masso, 2013, BMC Genomics.

New method for protein secondary structure assignment based on a simple topological descriptor

Iosif I Vaisman, T. Taylor, I. Vaisman, 2005, Proteins.

Delaunay Tessellation of Proteins: Four Body Nearest-Neighbor Propensities of Amino Acid Residues

Iosif I. Vaisman, Alexander Tropsha, Raj K. Singh, 1996, J. Comput. Biol..

cnnAlpha: Protein disordered regions prediction by reduced amino acid alphabets and convolutional neural networks

Mauricio Oberti, Iosif I Vaisman, I. Vaisman, 2020, Proteins.

Identification and Prediction of Intrinsically Disordered Regions in Proteins Using n-grams

Mauricio Oberti, Iosif I. Vaisman, I. Vaisman, 2017, BCB.

Statistical geometry analysis of proteins: implications for inverted structure prediction.

A Tropsha, A. Tropsha, W. Zheng, 1996, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Evaluation of pathogen specific urinary peptides in tick-borne illnesses

E. Petricoin, L. Liotta, R. Araujo, 2020, Scientific Reports.

A new method of secondary structure assignment based on the Delaunay tessellation of protein structures

Iosif I. Vaisman, Todd J. Taylor, T. Taylor, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Protein Structural Domain Assignment with a Delaunay Tessellation Derived Lattice

Iosif I. Vaisman, Todd J. Taylor, T. Taylor, 2006, 2006 3rd International Symposium on Voronoi Diagrams in Science and Engineering.

Computational Mutagenesis of E. coliLacRepressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity

Iosif I. Vaisman, Majid Masso, Kahkeshan Hijazi, 2008, ISBRA.

AUTO-MUTE 2.0: A Portable Framework with Enhanced Capabilities for Predicting Protein Functional Consequences upon Mutation

Iosif I. Vaisman, Majid Masso, I. Vaisman, 2014, Adv. Bioinformatics.

Structure-based predictors of resistance to the HIV-1 integrase inhibitor Elvitegravir.

I. Vaisman, M. Masso, Grace Chuang, 2014, Antiviral research.

Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage

Iosif I. Vaisman, Majid Masso, I. Vaisman, 2010, BMC Bioinformatics.

Elevated TNFR1 and Serotonin in Bone Metastasis Are Correlated with Poor Survival following Bone Metastasis Diagnosis for Both Carcinoma and Sarcoma Primary Tumors

E. Petricoin, L. Liotta, V. Espina, 2013, Clinical Cancer Research.

Graph theoretic properties of networks formed by the Delaunay tessellation of protein structures.

Iosif I Vaisman, Todd J Taylor, T. Taylor, 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

MOLECULAR DYNAMICS STUDY OF Aβ MONOMERS AND OLIGOMERS INTERACTING WITH COFACTORS by

Igor Griva, D. Klimov, I. Vaisman, 2013 .

Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins.

Alexander Tropsha, Iosif I Vaisman, Charles W Carter, 2003, Methods in enzymology.

Discrimination and Classification of Thermophilic and Mesophilic Proteins

Iosif I. Vaisman, Todd J. Taylor, T. Taylor, 2007, 4th International Symposium on Voronoi Diagrams in Science and Engineering (ISVD 2007).

Mobility of stretched water

Iosif I. Vaisman, Max L. Berkowitz, M. Berkowitz, 1993 .

Statistical and Computational Geometry of Biomolecular Structure

Iosif I. Vaisman, I. Vaisman, 2012 .

Statistical Geometry and Topology of Real and Model Protein Structures

Iosif I. Vaisman, Todd J. Taylor, T. Taylor, 2006, 2006 3rd International Symposium on Voronoi Diagrams in Science and Engineering.

A simple topological representation of protein structure: Implications for new, fast, and robust structural classification

Iosif I Vaisman, Min Shen, David L Bostick, 2004, Proteins.

Charge Transport Phenomena in Peptide Molecular Junctions

E. Petricoin, L. Liotta, I. Vaisman, 2008 .

A Cheminformatics Approach for Zeolite Framework Determination

Iosif I. Vaisman, Shujiang Yang, Mohammed Lach-hab, 2009, ICCS.

Shiny-pred: a Server for the Prediction of Protein Disordered Regions

Mauricio Oberti, Iosif I. Vaisman, I. Vaisman, 2019, F1000Research.

Comprehensive mutagenesis of HIV-1 protease: a computational geometry approach.

Majid Masso, Iosif I Vaisman, I. Vaisman, 2003, Biochemical and biophysical research communications.

A new approach to protein fold recognition based on Delaunay tessellation of protein structure.

A Tropsha, A. Tropsha, S. Cho, 1997, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

A Novel Sequence-Structure Approach for Accurate Prediction of Resistance to HIV-1 Protease Inhibitors

Iosif I. Vaisman, Majid Masso, I. Vaisman, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

A combined sequence-structure approach for predicting resistance to the non-nucleoside HIV-1 reverse transcriptase inhibitor Nevirapine.

Majid Masso, Iosif I Vaisman, I. Vaisman, 2011, Biophysical chemistry.

Machine Learning Prediction of Antimicrobial Peptides.

Guangshun Wang, I. Vaisman, M. V. van Hoek, 2022, Methods in molecular biology.

Error Estimation in Molecular Dynamics Experiments with a Tabulated Intermolecular Interaction Potential

I. Vaisman, Y. M. Kessler, M. G. Kiselev, 1988 .

Ionic Mobilities at Infinite Dilution: Structural Aspects

I. Vaisman, R. Kumeev, Y. M. Kessler, 1989 .