A. Bogdanov

发表

The ribosome as an allosterically regulated molecular machine

T. M. Makarova, A. Bogdanov, Alexey A. Bogdanov, 2017, Biochemistry (Moscow).

N6-Methylated Adenosine in RNA: From Bacteria to Humans.

P. Sergiev, O. Dontsova, A. Bogdanov, 2016, Journal of molecular biology.

Structure and Function of tmRNA (10Sa RNA)

O. Dontsova, A. Bogdanov, M. Zvereva, 2000, Molecular Biology.

5S rRNA sugar‐phosphate backbone protection in complexes with specific ribosomal proteins

O. Dontsova, A. Bogdanov, K. Nierhaus, 1996, FEBS letters.

Translation at first sight: the influence of leading codons

M. Gelfand, P. Sergiev, O. Dontsova, 2020, Nucleic acids research.

New fluorescent macrolide derivatives for studying interactions of antibiotics and their analogs with the ribosomal exit tunnel

A. Konevega, A. Bogdanov, V. Chertkov, 2016, Biochemistry (Moscow).

Conjugates of amino acids and peptides with 5-o-mycaminosyltylonolide and their interaction with the ribosomal exit tunnel.

A. Bogdanov, G. Korshunova, M. Svetlov, 2013, Bioconjugate chemistry.

Method for site-specific detection of m6A nucleoside presence in RNA based on high-resolution melting (HRM) analysis

P. Sergiev, O. Dontsova, A. Bogdanov, 2013, Nucleic acids research.

Structural insight into interaction between C20 phenylalanyl derivative of tylosin and ribosomal tunnel

A. Bogdanov, G. Makarov, N. Sumbatyan, 2017, Biochemistry (Moscow).

Amino acid and peptide derivatives of the tylosin family of macrolide antibiotics modified by aldehyde function

A. Bogdanov, V. Chertkov, N. Fedorova, 2010, Russian Journal of Bioorganic Chemistry.

V. Agol, B. Joseph, A. Bogdanov, 2003, Experimental cell research.

Investigation of ribosomes using molecular dynamics simulation methods

T. M. Makarova, A. Bogdanov, G. Makarov, 2016, Biochemistry (Moscow).

Prothymosin α fragmentation in apoptosis

V. Agol, A. Bogdanov, M. Kalkum, 2000 .

Destabilization of pH-sensitive liposomes in the presence of human erythrocyte ghosts

A. Bogdanov, V. Torchilin, A. Bogdanov, 1992 .

Surface topography of ribosomal RNA.

A. Mankin, A. Bogdanov, A. Kopylov, 1988, Methods in enzymology.

Unusual ribosome binding properties of mRNA encoding bacteriophage λ repressor

A. Bogdanov, I. Shatsky, A. Balakin, 1992 .

Base-intercalated and base-wedged stacking elements in 3D-structure of RNA and RNA–protein complexes

A. Bogdanov, E. Baulin, V. Metelev, 2020, Nucleic acids research.

Mutations at position A960 of E. coli 23 S ribosomal RNA influence the structure of 5 S ribosomal RNA and the peptidyltransferase region of 23 S ribosomal RNA.

P. Sergiev, O. Dontsova, A. Bogdanov, 2000, Journal of molecular biology.

Stepping Transfer Messenger RNA through the Ribosome*

P. Ivanov, L. Isaksson, O. Dontsova, 2005, Journal of Biological Chemistry.

A new technique for the characterization of long-range tertiary contacts in large RNA molecules: insertion of a photolabel at a selected position in 16S rRNA within the Escherichia coli ribosome.

R. Brimacombe, P. Baranov, S. Dokudovskaya, 1997, Nucleic acids research.

Protein immobilization on the surface of liposomes via carbodiimide activation in the presence of N‐hydroxysulfosuccinimide

V. Torchilin, A. Bogdanov, A. Klibanov, 1988, FEBS letters.

Targeted delivery of diagnostic agents by surface-modified liposomes

V. Torchilin, G. Wolf, A. Bogdanov, 1994 .

How much can we learn about the function of bacterial rRNA modification by mining large-scale experimental datasets?

P. Sergiev, O. Dontsova, A. Bogdanov, 2012, Nucleic acids research.

Survival guide: Escherichia coli in the stationary phase

P. Sergiev, O. Dontsova, A. Bogdanov, 2015, Acta naturae.

Synthesis, characterization, and biological evaluation of new tetrazole-based platinum(II) and palladium(II) chlorido complexes--potent cisplatin analogues and their trans isomers.

O. Ivashkevich, A. Bogdanov, P. N. Gaponik, 2013, Journal of inorganic biochemistry.

Circular structures in preparations of the replicative form of encephalomyocarditis virus RNA

V. Agol, A. Bogdanov, L. I. Romanova, 1970, FEBS letters.

Mouse Chromocenters Contain Associated Telomeric DNA and Telomerase Activity

O. Dontsova, A. Bogdanov, P. V. Dmitriev, 2002, Doklady Biological Sciences.

Circularity and cross-linking in preparations of replicative form of encephalomyocarditis virus RNA.

V. Agol, A. Bogdanov, L. I. Romanova, 1972, Journal of molecular biology.

Modified nucleotides m2G966/m5C967 of Escherichia coli 16S rRNA are required for attenuation of tryptophan operon

P. Sergiev, O. Dontsova, A. Bogdanov, 2013, Scientific Reports.

Regulation of flagellar gene expression in Bacteria

P. Sergiev, O. Dontsova, A. Bogdanov, 2015, Biochemistry (Moscow).

Mouse Trmt2B protein is a dual specific mitochondrial metyltransferase responsible for m5U formation in both tRNA and rRNA

P. Sergiev, O. Dontsova, A. Bogdanov, 2019, RNA biology.

The ybiN gene of Escherichia coli encodes adenine-N6 methyltransferase specific for modification of A1618 of 23 S ribosomal RNA, a methylated residue located close to the ribosomal exit tunnel.

P. Sergiev, O. Dontsova, A. Bogdanov, 2008, Journal of molecular biology.

Ribosomal RNA guanine-(N2)-methyltransferases and their targets

P. Sergiev, O. Dontsova, A. Bogdanov, 2007, Nucleic acids research.

Methyltransferase That Modifies Guanine 966 of the 16 S rRNA

A. Joachimiak, P. Sergiev, O. Dontsova, 2007, Journal of Biological Chemistry.

Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.

P. Sergiev, O. Dontsova, A. Bogdanov, 2006, Journal of molecular biology.

Overproduction in Escherichia coli, purification and properties of human prothymosin alpha.

A. Bogdanov, A. Evstafieva, N. Chichkova, 1995, European journal of biochemistry.

Peptide Derivatives of Antibiotics Tylosin and Desmycosin, Protein Synthesis Inhibitors

A. Bogdanov, G. Korshunova, N. Sumbatyan, 2003, Biochemistry (Moscow).

Small cytoplasmic RNA from mouse cells covalently linked to a protein

E. Koonin, V. Agol, A. Bogdanov, 1988, FEBS Letters.

Telomerase from Saccharomyces cerevisiae contains several protein subunits and may have different activities depending on the protein content

S. Dokudovskaya, O. Dontsova, A. Bogdanov, 1998, FEBS letters.

Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome.

A. Mankin, P. Sergiev, A. Konevega, 2018, Journal of molecular biology.

Internal ribosome entry site ofencephalomyocarditis virus RNA is unable to direct translation in Saccharomyces cerevisiae

A. Bogdanov, A. Beletsky, A. Borovjagin, 1993, FEBS letters.

Segments of Escherichia coli genome similar to the exons of human prothymosin α gene

I. Lyakhov, A. Bogdanov, A. Evstafieva, 1992 .

Prothymosin α is an evolutionary conserved protein covalently linked to a small RNA

A. Bogdanov, A. Vartapetian, T. Makarova, 1989 .

Synthesis and pathway of Luciola mingrelica firefly luciferase in Xenopus laevis frog oocytes and in cell-free systems.

A. Bogdanov, E. Skripkin, Skripkin Ea, 1989, Biochimie.

Specific and non-specific effects of sodium and potassium ions on the interactions between model charged groups of proteins

A. Bogdanov, S. Koniakhin, I. Terterov, 2022, 2208.14934.

Encephalomyocarditis virus RNA synthesis in vitro is protein‐primed.

E. Koonin, V. Agol, A. Bogdanov, 1984, The EMBO journal.

Peptide derivatives of tylosin-related macrolides

A. Bogdanov, N. Fedorova, G. Korshunova, 2007, Russian Journal of Bioorganic Chemistry.

Interplay between the ribosomal tunnel, nascent chain, and macrolides influences drug inhibition.

Daniel N. Wilson, F. Schluenzen, A. Starosta, 2010, Chemistry & biology.

Effects of the nature of counterions in solution on interactions of phenoxazones, xanthones, and carbazoles containing benzo-crown groups with DNA

A. Bogdanov, E. Moroshkina, O. Sedova, 2009 .

Ribosomal tunnel and translation regulation

A. Bogdanov, G. Korshunova, N. Sumbatyan, 2010, Biochemistry (Moscow).

Segments of the 16 S RNA located on the surface of the 30 S subunits of Escherichia coli ribosomes

A. Bogdanov, N. Teterina, A. Kopylov, 1980, FEBS letters.

[Topography of the mRNA-binding region of the ribosomal protein S1 from Escherichia coli].

A. Bogdanov, Andrei V Bakin, O. Borisova, 1988, Doklady Akademii nauk SSSR.

Conjugates of Chloramphenicol Amine and Berberine as Antimicrobial Agents

P. A. Nazarov, O. Dontsova, A. Konevega, 2022, Antibiotics.

Topography of RNA in the ribosome: Localization of the 3′‐end of the 23 S RNA on the surface of the 50 S ribosomal subunit by immune electron microscopy

A. Bogdanov, I. Shatsky, A. Evstafieva, 1980, FEBS letters.

Localization of the 3' end of Escherichia coli 16 S RNA by electron microscopy of antibody-labelled subunits.

A. Bogdanov, I. Shatsky, V. Vasiliev, 1979, Journal of molecular biology.

Photocontrollable Photonic Crystals Based on Porous Silicon Filled with Photochromic Liquid Crystalline Mixture

A. Bogdanov, A. Bobrovsky, S. Svyakhovskiy, 2020, Advanced Optical Materials.

Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site.

R. Brimacombe, O. Dontsova, A. Bogdanov, 1993, Nucleic acids research.

Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region; a site‐directed cross‐linking study with mRNA analogues.

R. Brimacombe, S. Dokudovskaya, O. Dontsova, 1992, The EMBO journal.

How does the mRNA pass through the ribosome?

A. Bogdanov, Andrei V Bakin, I. Shatsky, 1991, Biochimie.

[Mapping of the 16S rRNA regions in ribosomes capable of complementary binding of oligonucleotides].

A. Bogdanov, A. Kopylov, N. Chichkova, 1981, Biokhimiia.

Synthesis of Adenines with a Phosphorus-Containing Group in the 9-Position

A. Bogdanov, A. Burilov, M. Pudovik, 2018, Russian Journal of Organic Chemistry.

Advanced Organic Chemistry of Nucleic Acids

A. Bogdanov, Z. Shabarova, 1994 .

Identification of the Escherichia coli 30S ribosomal subunit protein neighboring mRNA during initiation of translation.

O. Dontsova, A. Bogdanov, A. Kopylov, 1992, Biochimie.

Topography of rna in the ribosome localization of the 16 s rna 5' end by immune electron microscopy.

A. Bogdanov, I. Shatsky, V. Vasiliev, 1982, Journal of molecular biology.

Stem-loop IV of 5S rRNA lies close to the peptidyltransferase center.

R. Brimacombe, S. Dokudovskaya, O. Dontsova, 1994, Proceedings of the National Academy of Sciences of the United States of America.

The path of mRNA through the bacterial ribosome: a site-directed crosslinking study using new photoreactive derivatives of guanosine and uridine.

R. Brimacombe, S. Dokudovskaya, P. Sergiev, 1997, RNA.

Specific fragmentation of tRNA and rRNA at a 7-methylguanine residue in the presence of methylated carrier RNA.

A. Mankin, A. Bogdanov, L. Baratova, 1985, European journal of biochemistry.

RNA-protein interactions at the initial and terminal stages of protein biosynthesis as investigated by Lev Kisselev (On the occasion of his 70th anniversary)

A. Bogdanov, V. Karpov, Alexei A. Bogdanov, 2006, Biochemistry (Moscow).

Proteins covalently linked to viral genomes.

A. Bogdanov, A. Vartapetian, A. B. Vartapetian, 1987, Progress in nucleic acid research and molecular biology.

Transition of the mRNA sequence downstream from the initiation codon into a single-stranded conformation is strongly promoted by binding of the initiator tRNA

A. Bogdanov, I. Shatsky, E. Skripkin, 1990, Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression.

Telomerase as a potential marker for early diagnosing cervical carcinoma

O. Dontsova, A. Bogdanov, M. Rubtsova, 2006, Doklady Biochemistry and Biophysics.

Lectin-bearing liposomes: differential binding to normal and to transformed mouse fibroblasts.

V. Torchilin, A. Bogdanov, L. Margolis, 1989, Experimental cell research.

Modern Site-Directed Cross-Linking Approaches: Implication for Ribosome Structure and Functions

P. Sergiev, O. Dontsova, A. Bogdanov, 2000 .

The structure of the covalent linkage between proteins and RNA in encephalomyocarditis virus.

A. Bogdanov, K. Chumakov, Y. Drygin, 1980, Nucleic acids research.

Liposomal diamidine (imidocarb): preparation and animal studies.

V. Torchilin, A. Bogdanov, A. Klibanov, 1994, Journal of microencapsulation.

Influence of the spacer region between the Shine–Dalgarno box and the start codon for fine‐tuning of the translation efficiency in Escherichia coli

M. Gelfand, P. Sergiev, O. Dontsova, 2020, Microbial biotechnology.

Spatial organization of template polynucleotides on the ribosome determined by fluorescence methods.

A. Bogdanov, Andrei V Bakin, I. Shatsky, 1991, Journal of molecular biology.

Complex of Transfer-messenger RNA and Elongation Factor Tu

Natalya I. Topilina, O. Dontsova, A. Bogdanov, 2001, The Journal of Biological Chemistry.

Ribosome: Lessons of a molecular factory construction

P. Sergiev, O. Dontsova, A. Bogdanov, 2014, Molecular Biology.

The role of ribonucleic acids in the organization and functioning of ribosomes of E. coli.

A. Bogdanov, I. Shatsky, A. Kopylov, 1980, Sub-cellular biochemistry.

trans-Translation: The Main Participants and the Role in Cell Life

P. Ivanov, O. Dontsova, A. Bogdanov, 2004, Molecular Biology.

METTL15 interacts with the assembly intermediate of murine mitochondrial small ribosomal subunit to form m4C840 12S rRNA residue

P. Sergiev, O. Dontsova, A. Bogdanov, 2020, Nucleic acids research.

The fusion of artificial lipid membranes induced by the synthetic arenavirus 'fusion peptide'.

A. Bogdanov, V. Torchilin, S. Glushakova, 1992, Biochimica et biophysica acta.

Binding and Action of Triphenylphosphonium Analog of Chloramphenicol upon the Bacterial Ribosome

A. Konevega, A. Bogdanov, I. Osterman, 2021, Antibiotics.

Structure of Dirithromycin Bound to the Bacterial Ribosome Suggests New Ways for Rational Improvement of Macrolides.

P. Sergiev, O. Dontsova, A. Konevega, 2019 .

Structure of Dirithromycin Bound to the Bacterial Ribosome Suggests New Ways for Rational Improvement of Macrolides

P. Sergiev, O. Dontsova, A. Konevega, 2019, Antimicrobial Agents and Chemotherapy.

Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state

P. Sergiev, O. Dontsova, A. Konevega, 2017, Nucleic acids research.

Impact of methylations of m2G966/m5C967 in 16S rRNA on bacterial fitness and translation initiation

M. Rodnina, P. Sergiev, O. Dontsova, 2012, Nucleic acids research.

Impact of methylations of m 2 G 966 / m 5 C 967 in 16 S rRNA on bacterial fitness and translation initiation

M. Rodnina, P. Sergiev, O. Dontsova, 2012 .

Modifications of ribosomal RNA: From enzymes to function

P. Sergiev, O. Dontsova, A. Bogdanov, 2011 .

The environment of 5S rRNA in the ribosome: cross-links to the GTPase-associated area of 23S rRNA.

R. Brimacombe, S. Dokudovskaya, P. Sergiev, 1998, Nucleic acids research.

Loop IV of 5S ribosomal RNA has contacts both to domain II and to domain V of the 23S RNA.

R. Brimacombe, S. Dokudovskaya, O. Dontsova, 1996, RNA.

Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel

Daniel N. Wilson, A. Osterman, P. Sergiev, 2020, Nature Chemical Biology.

Investigation of ribosomes using molecular dynamics simulation methods

T. M. Makarova, A. Bogdanov, G. Makarov, 2016, Biochemistry (Moscow).

Molecular dynamics investigation of a mechanism of allosteric signal transmission in ribosomes

A. Bogdanov, A. Golovin, G. Makarov, 2015, Biochemistry (Moscow).

Telomerase is an unusual RNA-containing enzyme. A review.

S. Dokudovskaya, O. Dontsova, A. Bogdanov, 1997, Biochemistry. Biokhimiia.

Application of sorting and next generation sequencing to study 5΄-UTR influence on translation efficiency in Escherichia coli

Mikhail S. Gelfand, Elena S. Kostryukova, Andrey A. Mironov, 2016, Nucleic acids research.

A bacterial homolog YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity

P. Sergiev, O. Dontsova, A. Bogdanov, 2015, RNA biology.

What do we know about ribosomal RNA methylation in Escherichia coli?

P. Sergiev, A. Bogdanov, O. Sergeeva, 2015, Biochimie.

The last rRNA methyltransferase of E. coli revealed: the yhiR gene encodes adenine-N6 methyltransferase specific for modification of A2030 of 23S ribosomal RNA.

P. Sergiev, O. Dontsova, A. Bogdanov, 2012, RNA.

Comprehensive Functional Analysis of Escherichia coli Ribosomal RNA Methyltransferases

P. Sergiev, O. Dontsova, A. Bogdanov, 2020, Frontiers in Genetics.

Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study.

R. Brimacombe, S. Dokudovskaya, O. Dontsova, 1994, Nucleic acids research.

Ribosomal protein S18 acetyltransferase RimI is responsible for the acetylation of elongation factor Tu

P. Sergiev, O. Dontsova, A. Konevega, 2022, The Journal of biological chemistry.

Oligoglutamylation of E. coli ribosomal protein S6 is under growth phase control.

P. Sergiev, A. Bogdanov, I. Osterman, 2019, Biochimie.

Poly(ethylene glycol) on the liposome surface: on the mechanism of polymer-coated liposome longevity.

A A Bogdanov, V. Torchilin, A. Bogdanov, 1994, Biochimica et biophysica acta.

RNA editing: breaking the dogma

A. Bogdanov, A. A. Zamyatnin, R. Zinovkin, 2011, Biochemistry (Moscow).

How can elongation factors EF‐G and EF‐Tu discriminate the functional state of the ribosome using the same binding site?

P. Sergiev, O. Dontsova, A. Bogdanov, 2005, FEBS letters.

Does a deficiency of the signal recognition particle (SRP)-pathway affect the biosynthesis of its components in Saccharomyces cerevisiae and Escherichia coli?

P. Sergiev, O. Dontsova, A. Bogdanov, 2006, Biochemistry (Moscow).

Unusual ribosome binding properties of mRNA encoding bacteriophage lambda repressor.

A. Bogdanov, I. Shatsky, E. Skripkin, 1992, Nucleic Acids Research.

Chemical Methods for the Structural Study of the Ribosome: Judgment Day

A. A. Bogdanov, P. Sergiev, O. Dontsova, 2001, Molecular Biology.

Correlating the X-ray structures for halo- and thermophilic ribosomal subunits with biochemical data for the Escherichia coli ribosome.

R. Brimacombe, S. Dokudovskaya, P. Sergiev, 2001, Cold Spring Harbor symposia on quantitative biology.

[Study of ribosome structure using the biochemical methods: judgment day].

P. Sergiev, O. Dontsova, A. Bogdanov, 2001, Molekuliarnaia biologiia.

Sorting Out Antibiotics' Mechanisms of Action: a Double Fluorescent Protein Reporter for High-Throughput Screening of Ribosome and DNA Biosynthesis Inhibitors

P. Sergiev, O. Dontsova, A. Bogdanov, 2016, Antimicrobial Agents and Chemotherapy.

Some Structural Aspects of the Peptidyl Transferase Reaction

A. Bogdanov, 2003, Molecular Biology.

Structural features of the tmRNA-ribosome interaction.

L. Isaksson, O. Dontsova, A. Bogdanov, 2009, RNA.

30S ribosomal subunits with fragmented 16S RNA: a new approach for structure and function study of ribosomes.

A. Bogdanov, N. Chichkova, E. Afonina, 1991, Biochimie.

Function of the ribosomal E-site: a mutagenesis study

R. Brimacombe, P. Sergiev, O. Dontsova, 2005, Nucleic acids research.

Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome.

T. Steitz, M. Rodnina, A. Mankin, 2014, Molecular cell.

Regulation of flagellar gene expression in Bacteria

P. Sergiev, O. Dontsova, A. Bogdanov, 2015, Biochemistry (Moscow).

Parameters for the interaction of ribosomal proteins L5, L18, and L25 with 5S RNA from Escherichia coli.

P. Spierer, A. Bogdanov, R. Zimmermann, 1978, Biochemistry.

Conformational changes in 16S ribosomal RNA induced by 30S ribosomal subunit proteins from Escherichia coli.

C. Wang, A. Bogdanov, R. Zimmermann, 1978, Science.

Techniques for Screening Translation Inhibitors

P. Sergiev, O. Dontsova, A. Bogdanov, 2016, Antibiotics.

Attenuation-Based Dual-Fluorescent-Protein Reporter for Screening Translation Inhibitors

P. Sergiev, O. Dontsova, A. Bogdanov, 2012, Antimicrobial Agents and Chemotherapy.

The nucleotide sequence of the gene coding for the 16S rRNA from the archaebacterium Halobacterium halobium.

A. Mankin, A. Bogdanov, N. Teterina, 1985, Gene.

The Database of Ribosomal Cross links (DRC)

Richard Brimacombe, Pavel V. Baranov, Petr V. Sergiev, 1998, Nucleic Acids Res..

Triphenilphosphonium Analogs of Chloramphenicol as Dual-Acting Antimicrobial and Antiproliferating Agents

P. A. Nazarov, A. Konevega, A. Bogdanov, 2021, Antibiotics.

Modification of 18 S rRNA in the 40 S ribosomal subunit of yeast with dimethyl sulfate

A. Mankin, A. Bogdanov, A. Kopylov, 1981, FEBS letters.

Non-stressful death of 23S rRNA mutant G2061C defective in puromycin reaction.

P. Sergiev, O. Dontsova, A. Bogdanov, 2012, Journal of molecular biology.

Crosslinking of 4.5S RNA to the Escherichia coli ribosome in the presence or absence of the protein Ffh.

R. Brimacombe, P. Sergiev, O. Dontsova, 2002, RNA.

A protonated base pair participating in rRNA tertiary structural interactions.

R. Brimacombe, P. Sergiev, O. Dontsova, 2001, Nucleic acids research.

New features of 23S ribosomal RNA folding: the long helix 41-42 makes a "U-turn" inside the ribosome.

R. Brimacombe, P. Baranov, O. Gurvich, 1998, RNA.

MESSENGER RNA PATH THROUGH THE PROCARYOTIC RIBOSOME

R. Brimacombe, O. Dontsova, A. Bogdanov, 1993 .

Topography of RNA in the ribosome: location of the 5 S RNA residues A39 and U40 on the central protuberance of the 50 S subunit

A. Bogdanov, V. Vasiliev, A.G. Evstafieva, 1985, FEBS letters.

Insights into the improved macrolide inhibitory activity from the high-resolution cryo-EM structure of dirithromycin bound to the E. coli 70S ribosome

P. Sergiev, O. Dontsova, A. Konevega, 2020, RNA.

The ribosome as an allosterically regulated molecular machine

T. M. Makarova, A. Bogdanov, 2017, Biochemistry (Moscow).

Structural changes in the ribosome during the elongation cycle

P. Sergiev, O. Dontsova, A. Bogdanov, 2006, Molecular Biology.

Structure of 5S rRNA within the Escherichia coli ribosome: iodine-induced cleavage patterns of phosphorothioate derivatives.

O. Dontsova, A. Bogdanov, K. Nierhaus, 1998, RNA.

Purification of 30S ribosomal subunit by streptavidin affinity chromatography.

P. Sergiev, O. Dontsova, A. Bogdanov, 2010, Biochimie.

The interaction with Escherichia coli 23S rRNA helices 89 and 91 contributes to the IF2 activity but is insignificant for the functioning of the elongation factors

P. Sergiev, O. Dontsova, A. Bogdanov, 2007, Molecular Biology.

The conserved A-site finger of the 23S rRNA: just one of the intersubunit bridges or a part of the allosteric communication pathway?

P. Sergiev, O. Dontsova, A. Bogdanov, 2005, Journal of molecular biology.

How does tmRNA move through the ribosome?

V. Lim, O. Dontsova, A. Bogdanov, 2002, FEBS letters.

Direct localization by cryo-electron microscopy of secondary structural elements in Escherichia coli 23 S rRNA which differ from the corresponding regions in Haloarcula marismortui.

R. Brimacombe, M. van Heel, R. Matadeen, 2001, Journal of molecular biology.

Structure and function of 5S rRNA in the ribosome.

S. Dokudovskaya, O. Dontsova, A. Bogdanov, 1995, Biochemistry and cell biology = Biochimie et biologie cellulaire.

Affinity Purification of Ribosomes with a Lethal G2655C Mutation in 23 S rRNA That Affects the Translocation*

R. Brimacombe, P. Sergiev, O. Dontsova, 2003, Journal of Biological Chemistry.

Interaction of mRNA with the Escherichia coli ribosome: accessibility of phosphorothioate-containing mRNA bound to ribosomes for iodine cleavage.

O. Dontsova, A. Bogdanov, K. Nierhaus, 1996, Nucleic acids research.

Alteration in Location of a Conserved GTPase-associated Center of the Ribosome Induced by Mutagenesis Influences the Structure of Peptidyltransferase Center and Activity of Elongation Factor G*

R. Brimacombe, P. Sergiev, O. Dontsova, 2005, Journal of Biological Chemistry.

Allosteric regulation of the ribosomal A site revealed by molecular dynamics simulations.

T. M. Makarova, A. Bogdanov, 2019, Biochimie.

Comparison of DNA Complexation with Antitumor Agent cis-DDP and Binuclear Bivalent Platinum Compound Containing Pyrazine

A. Bogdanov, N. A. Kas’yanenko, K. I. Yakovlev, 2002, Molecular Biology.

Identification of Escherichia coli m2G methyltransferases: II. The ygjO gene encodes a methyltransferase specific for G1835 of the 23 S rRNA.

P. Sergiev, O. Dontsova, A. Bogdanov, 2006, Journal of molecular biology.

Properties of small rRNA methyltransferase RsmD: mutational and kinetic study.

P. Tsvetkov, A. Makarov, P. Sergiev, 2012, RNA.

Methylated 23S rRNA nucleotide m2G1835 of Escherichia coli ribosome facilitates subunit association.

Philipp O Tsvetkov, Alexander A Makarov, P. Tsvetkov, 2011, Biochimie.

kinetic study Properties of small rRNA methyltransferase RsmD : Mutational and

P. Tsvetkov, A. Makarov, P. Sergiev, 2012 .

Multiple Non-Canonical Base-Stacking Interactions as One of the Major Determinants of RNA Tertiary Structure Organization

A. Bogdanov, E. Baulin, V. Metelev, 2023, Biochemistry (Moscow).

The structure of helix 89 of 23S rRNA is important for peptidyl transferase function of Escherichia coli ribosome

P. Sergiev, O. Dontsova, A. Konevega, 2011, FEBS letters.

Mutations at the accommodation gate of the ribosome impair RF2-dependent translation termination.

M. Rodnina, P. Sergiev, O. Dontsova, 2010, RNA.

Construction of the ‘minimal’ SRP that interacts with the translating ribosome but not with specific membrane receptors in Escherichia coli

R. Brimacombe, P. Sergiev, O. Dontsova, 2002, FEBS letters.

Ribosome: Lessons of a molecular factory construction

P. Sergiev, O. Dontsova, A. Bogdanov, 2014, Molecular Biology.

Prothymosin alpha fragmentation in apoptosis.

V. Agol, A. Bogdanov, M. Kalkum, 2000, FEBS Letters.

Prothymosin alpha is an evolutionary conserved protein covalently linked to a small RNA.

A. Bogdanov, A. Vartapetian, T. Makarova, 1989, FEBS letters.

Effect of point mutations at position 89 of the E. coli 5S rRNA on the assembly and activity of the large ribosomal subunit

O. Dontsova, A. Bogdanov, K. Nierhaus, 1998, FEBS letters.

Complementary binding of oligonucleotides with 16S RNA and ribosomal ribonucleoproteins

A. Bogdanov, N. Chichkova, S. Vasilenko, 1975, Molecular Biology Reports.

Interaction of chloramphenicol tripeptide analogs with ribosomes

A. Bogdanov, G. Korshunova, A. Tereshchenkov, 2016, Biochemistry (Moscow).

Segments of Escherichia coli genome similar to the exons of human prothymosin alpha gene.

I. Lyakhov, A. Bogdanov, A. Evstafieva, 1992, FEBS letters.

Escherichia coli Ribosomes as a Model for Testing New Photoactivated tRNA Analogs Containing 6-Thioguanosine Residues

P. Sergiev, O. Dontsova, A. Bogdanov, 2004, Molecular Biology.

Creation of a general model of RNA spatial organization.

A. Bogdanov, 1989, Trends in biochemical sciences.

Tetrahydrocarbazoles as Novel Class of DNA Biosynthesis Inhibitors in Bacteria

P. Sergiev, O. Dontsova, A. Bogdanov, 2020, Anti-Infective Agents.

rRNA topography in ribosome. IV. The accessibility of the 5'-end region of 16S rRNA

S. V. Vinogradov, A. Bogdanov, A. Kopylov, 1979, Molecular Biology Reports.

Radish mosaic virus VPg Characteristics and linkage with virion RNAs

A. Bogdanov, Y. Drygin, Michail V. Sapotsky, 1987 .

Screening Translation Inhibitors Dual-Fluorescent-Protein Reporter for Attenuation-Based

P. Sergiev, A. Bogdanov, I. Osterman, 2012 .