O. Kurkcuoglu

发表

Identification of potential allosteric communication pathways between functional sites of the bacterial ribosome by graph and elastic network models.

P. Guzel, O. Kurkcuoglu, 2017, Biochimica et biophysica acta. General subjects.

Collective dynamics of the ribosomal tunnel revealed by elastic network modeling

R. Jernigan, P. Doruker, O. Kurkcuoglu, 2009, Proteins.

Mechanism of cohesin loading onto chromosomes: a conformational dynamics study.

P. Bates, O. Kurkcuoglu, 2010, Biophysical journal.

Focused functional dynamics of supramolecules by use of a mixed-resolution elastic network model.

Robert L Jernigan, Pemra Doruker, R. Jernigan, 2009, Biophysical journal.

Mixed levels of coarse-graining of large proteins using elastic network model succeeds in extracting the slowest motions

Robert L. Jernigan, Pemra Doruker, R. Jernigan, 2004 .

The ribosome structure controls and directs mRNA entry, translocation and exit dynamics

R. Jernigan, A. Kloczkowski, P. Doruker, 2008, Physical biology.

2-Thiobarbituric acid addition improves structural integrity and controlled drug delivery of biocompatible pectin hydrogels

O. Kurkcuoglu, F. Güner, O. Z. Güner, 2020 .

A multiscale investigation on controlling bovine serum albumin adsorption onto polyurethane films

O. Kurkcuoglu, F. Güner, Selin Sofi Kurkcuoglu, 2018 .

The elastic network model reveals a consistent picture on intrinsic functional dynamics of type II restriction endonucleases

L. Nilsson, P. Doruker, O. Kurkcuoglu, 2011, Physical biology.

Repurposing of FDA‐approved drugs against active site and potential allosteric drug‐binding sites of COVID‐19 main protease

O. Kurkcuoglu, F. A. Sungur, Merve Yuce, 2021, Proteins.

Potential allosteric sites captured in glycolytic enzymes via residue-based network models: Phosphofructokinase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase.

O. Kurkcuoglu, E. D. Akten, Tuğçe Inan, 2021, Biophysical chemistry.

Low‐methoxyl pectin–zeolite hydrogels controlling drug release promote in vitro wound healing

O. Kurkcuoglu, F. Guner, M. Tatlier, 2019, Journal of Applied Polymer Science.

Preparation and Determination of In Vivo and In Vitro Performance of Doxycycline Imprinted Contact Lenses for Corneal Neovascularization Treatment

O. Kurkcuoglu, A. Heper, B. Okutan, 2018, Journal of the Turkish Chemical Society, Section A: Chemistry.

Elucidating doxycycline loading and release performance of imprinted hydrogels with different cross-linker concentrations: a computational and experimental study

O. Kurkcuoglu, F. Güner, Tuğçe Inan, 2021, Journal of Polymer Research.

Noncovalent Pyrene-Polyethylene Glycol Coatings of Carbon Nanotubes Achieve in Vitro Biocompatibility.

O. Kurkcuoglu, N. Karatepe, F. Güner, 2018, Langmuir : the ACS journal of surfaces and colloids.

Pectin–Zeolite-Based Wound Dressings with Controlled Albumin Release

O. Kurkcuoglu, M. Tatlier, F. Güner, 2022, Polymers.

Monte Carlo and Molecular Dynamics Simulations suggest controlled release of corticosteroids from mesoporous host MIL-101 (Cr)

O. Kurkcuoglu, F. A. Sungur, Merve Ayvaz Koroglu, 2021, Molecular Simulation.

Exploring species-specific inhibitors with multiple target sites on S. aureus pyruvate kinase using a computational workflow

O. Kurkcuoglu, Merve Yuce, Zehra Sarica, 2022, Journal of biomolecular structure & dynamics.

Conformational dynamics of bacterial trigger factor in apo and ribosome-bound states

P. Doruker, O. Kurkcuoglu, A. Uyar, 2017, PloS one.

Loop motions of triosephosphate isomerase observed with elastic networks.

Robert L Jernigan, Pemra Doruker, R. Jernigan, 2006, Biochemistry.

Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model

P. Guzel, O. Kurkcuoglu, Merve Yuce, 2020, Frontiers in Molecular Biosciences.

Collective Dynamics of EcoRI-DNA Complex by Elastic Network Model and Molecular Dynamics Simulations

Lennart Nilsson, Pemra Doruker, L. Nilsson, 2006, Journal of biomolecular structure & dynamics.

Computational assessment of thermostability in miRNA:CNT system using molecular dynamics simulations.

O. Kurkcuoglu, Aysa Güvensoy-Morkoyun, A. Güvensoy-Morkoyun, 2020, Biochimica et biophysica acta. General subjects.

A computational and experimental approach to develop minocycline-imprinted hydrogels and determination of their drug delivery performances

O. Kurkcuoglu, F. Güner, Tuğçe Inan, 2018, Journal of Polymer Research.

Fmoc-PEG Coated Single-Wall Carbon Nanotube Carriers by Non-covalent Functionalization: An Experimental and Molecular Dynamics Study

O. Kurkcuoglu, N. Karatepe, F. Güner, 2021, Frontiers in Bioengineering and Biotechnology.

Molecular Dynamics Simulations Can Predict the Optimum Drug Loading Amount in Pectin Hydrogels for Controlled Release

O. Kurkcuoglu, F. Güner, B. Kocaaga, 2022, Materials Today Communications.

Elastic Network Models of Coarse-Grained Proteins Are Effective for Studying the Structural Control Exerted over Their Dynamics

Guang Song, R. Jernigan, Lei Yang, 2008 .