A. M. Ruvinsky

发表

Local packing modulates diversity of iron pathways and cooperative behavior in eukaryotic and prokaryotic ferritins.

I. Vakser, A. M. Ruvinsky, M. Rivera, 2014, The Journal of chemical physics.

Rotamer libraries and probabilities of transition between rotamers for the side chains in protein–protein binding

Ilya A Vakser, Alexander V Tuzikov, Tatsiana Kirys, 2012, Proteins.

Sequence composition and environment effects on residue fluctuations in protein structures.

Ilya A Vakser, I. Vakser, A. M. Ruvinsky, 2009, The Journal of chemical physics.

Side-chain conformational changes upon Protein-Protein Association.

Ilya A Vakser, Alexander V Tuzikov, Tatsiana Kirys, 2010, Journal of molecular biology.

Structural Fluctuations and Conformational Changes in Proteins and Protein Complexes

I. Vakser, A. M. Ruvinsky, T. Kirys, 2011, 1110.5124.

Deciphering Cryptic Binding Sites on Proteins by Mixed-Solvent Molecular Dynamics

Woody Sherman, Angelo D. Favia, Angelo D Favia, 2017, J. Chem. Inf. Model..

Novel knowledge-based potentials for ligand docking: variational approach to the old problem.

A. M. Ruvinsky, A. Kozintsev, A M Ruvinsky, 2005, Biophysical chemistry.

The key role of atom types, reference states, and interaction cutoff radii in the knowledge‐based method: New variational approach

A. M. Ruvinsky, A. Kozintsev, A M Ruvinsky, 2005, Proteins.

Interaction cutoff effect on ruggedness of protein–protein energy landscape

Ilya A Vakser, I. Vakser, A. M. Ruvinsky, 2007, Proteins.

Chasing funnels on protein-protein energy landscapes at different resolutions.

Ilya A Vakser, I. Vakser, A. M. Ruvinsky, 2008, Biophysical journal.

Ensemble‐based characterization of unbound and bound states on protein energy landscape

Ilya A Vakser, Alexander V Tuzikov, Tatsiana Kirys, 2012, Protein science : a publication of the Protein Society.

MAGNETOEXCITONS IN COUPLED QUANTUM WELLS

A. M. Ruvinsky, Y. Lozovik, 1997 .

The Role of Bridging Water and Hydrogen Bonding as Key Determinants of Noncovalent Protein–Carbohydrate Recognition

Matthew P. Repasky, H. Matter, G. Hessler, 2018, ChemMedChem.

Role of binding entropy in the refinement of protein–ligand docking predictions: Analysis based on the use of 11 scoring functions

A. M. Ruvinsky, 2006, J. Comput. Chem..

Structural Insights Lead to a Negamycin Analogue with Improved Antimicrobial Activity against Gram-Negative Pathogens.

Matthew D. Miller, G. Basarab, A. M. Ruvinsky, 2015, ACS medicinal chemistry letters.

Correlation analysis of the side-chains conformational distribution in bound and unbound proteins

I. Vakser, A. M. Ruvinsky, T. Kirys, 2012, BMC Bioinformatics.

The ruggedness of protein-protein energy landscape and the cutoff for 1/rn potentials

Ilya A. Vakser, Anatoly M. Ruvinsky, I. Vakser, 2008, Bioinform..

The structure of the BfrB-Bfd complex reveals protein-protein interactions enabling iron release from bacterioferritin.

I. Vakser, A. M. Ruvinsky, M. Rivera, 2012, Journal of the American Chemical Society.

Simulated unbound structures for benchmarking of protein docking in the Dockground resource

I. Vakser, A. M. Ruvinsky, P. Kundrotas, 2015, BMC Bioinformatics.

Calculations of protein-ligand binding entropy of relative and overall molecular motions

Anatoly M. Ruvinsky, A. M. Ruvinsky, 2007, J. Comput. Aided Mol. Des..

New and fast statistical‐thermodynamic method for computation of protein‐ligand binding entropy substantially improves docking accuracy

Anatoly M. Ruvinsky, A. V. Kozintsev, A. M. Ruvinsky, 2005, J. Comput. Chem..

Novel statistical‐thermodynamic methods to predict protein‐ligand binding positions using probability distribution functions

A. M. Ruvinsky, A. Kozintsev, A M Ruvinsky, 2005, Proteins.