A. Dejaegere

发表

Dynamic correlation networks in human peroxisome proliferator-activated receptor-γ nuclear receptor protein

Roland H. Stote, Annick Dejaegere, Dino Moras, 2010, European Biophysics Journal.

Alternative dimerization interfaces in the glucocorticoid receptor-α ligand binding domain.

R. Stote, A. Dejaegere, Laurent Bianchetti, 2018, Biochimica et biophysica acta. General subjects.

STRUCTURAL DYNAMICS OF PMP-D2 : AN EXPERIMENTAL AND THEORETICAL STUDY

J. Lefèvre, R. Stote, A. Dejaegere, 1996 .

Structural and dynamic characterization of omega-conotoxin MVIIA: the binding loop exhibits slow conformational exchange.

J. Lefèvre, A. Dejaegere, B. Kieffer, 2000, Biochemistry.

Protein–protein recognition and interaction hot spots in an antigen–antibody complex: Free energy decomposition identifies “efficient amino acids”

Annick Dejaegere, Roland H Stote, R. Stote, 2007, Proteins.

Comparative normal mode analysis of LFA-1 integrin I-domains.

Annick Dejaegere, Thomas Gaillard, Xabier Lopez, 2007, Journal of molecular biology.

Molecular Mechanics and Dynamics Simulations of Enzymes

M. Karplus, R. Stote, A. Dejaegere, 2002 .

Structure of the transcription activator target Tra1 within the chromatin modifying complex SAGA

A. Dejaegere, A. Myasnikov, P. Schultz, 2017, Nature Communications.

Structural insights into the molecular mechanism of vitamin D receptor activation by lithocholic acid involving a new mode of ligand recognition.

R. Stote, N. Rochel, A. Dejaegere, 2014, Journal of medicinal chemistry.

Evolution of nuclear retinoic acid receptor alpha (RARα) phosphorylation sites. Serine gain provides fine-tuned regulation.

Gabriel V. Markov, R. Stote, V. Laudet, 2011, Molecular biology and evolution.

The “Phantom Effect” of the Rexinoid LG100754: Structural and Functional Insights

D. Moras, Yoshiteru Sato, N. Rochel, 2010, PloS one.

KAT2A/KAT2B-targeted acetylome reveals a role for PLK4 acetylation in preventing centrosome amplification

P. Gönczy, Marjorie Fournier, L. Tora, 2016, Nature Communications.

Functional relationship between matrix metalloproteinase-11 and matrix metalloproteinase-14

A. Dejaegere, V. Dive, M. Ruff, 2014, Cancer Medicine.

Tex19 and Sectm1 concordant molecular phylogenies support co-evolution of both eutherian-specific genes

R. Stote, A. Dejaegere, Laurent Bianchetti, 2015, BMC Evolutionary Biology.

“Dimerization of the Mineralocorticoid Receptor Ligand Binding Domain by helix 9, 10 and the F-domain”

A. Dejaegere, Laurent Bianchetti, D. Sinar, 2020, bioRxiv.

Study of NMR relaxation of xenon-131 in quadrupolar solvents

A. Dejaegere, J. Reisse, M. Luhmer, 1991 .

1-Hydroxy-2(1H)-pyridinone-Based Chelators with Potential Catechol O-Methyl Transferase Inhibition and Neurorescue Dual Action against Parkinson’s Disease

R. Stote, A. Dejaegere, D. Tétard, 2022, Molecules.

Biophysical approaches determining ligand binding to biomolecular targets : detection, measurement and modelling

A. Dejaegere, B. Kieffer, A. Podjarny, 2011 .

Histone H3 Tails Containing Dimethylated Lysine and Adjacent Phosphorylated Serine Modiﬁcations Adopt a Speciﬁc Conformation during Mitosis and Meiosis (cid:1) †

R. Stote, L. Tora, M. Oulad-Abdelghani, 2008 .

A comparison between the PISA model and the RAM theory: their abilities to reproduce internal energy as calculated by Monte Carlo simulations

A. Dejaegere, J. Reisse, M. Luhmer, 1990 .

An empirical analysis of proton chemical shifts in nucleic acids

D. Case, A. Dejaegere, R. Bryce, 1999 .

Functionality maps of the ATP binding site of DNA gyrase B: generation of a consensus model of ligand binding.

Finton Sirockin, Roland H Stote, R. Stote, 2004, Journal of medicinal chemistry.

Structural basis for the accommodation of bis- and tris-aromatic derivatives in vitamin D nuclear receptor.

D. Moras, Yoshiteru Sato, N. Rochel, 2012, Journal of medicinal chemistry.

Short informative title: “Dimerization of the Mineralocorticoid Receptor Ligand Binding Domain by helix 9, 10 and the F-domain” Short running title: ”Mineralocorticoid receptor LBD dimer structure” Authors

A. Dejaegere, Laurent Bianchetti, D. Sinar, 2020 .

Insights into mineralocorticoid receptor homodimerization from a combined molecular modeling and bioinformatics study

A. Dejaegere, Laurent Bianchetti, D. Sinar, 2021, Proteins.

Dual Specificity of the Interfacial Inhibitor Brefeldin A for Arf Proteins and Sec7 Domains*

J. Cherfils, B. Guibert, M. Zeghouf, 2006, Journal of Biological Chemistry.

Tex19 and Sectm1 concordant molecular phylogenies support co-evolution of both eutherian-specific genes

R. Stote, A. Dejaegere, Laurent Bianchetti, 2015, BMC Evolutionary Biology.

Molecular Basis for Bcl-2 Homology 3 Domain Recognition in the Bcl-2 Protein Family

R. Stote, A. Dejaegere, G. Moroy, 2009, The Journal of Biological Chemistry.

Allostery in Its Many Disguises: From Theory to Applications.

Ruth Nussinov, Ivet Bahar, Dima Kozakov, 2019, Structure.

The molecular mechanisms underlying the ERα-36-mediated signaling in breast cancer

N. Rochel, Y. Chebaro, I. Treilleux, 2016, Oncogene.

Structure-based design of short peptide ligands binding onto the E. coli processivity ring.

J. Wagner, P. Dumas, V. Olieric, 2011, Journal of Medicinal Chemistry.

The Asymmetric Binding of PGC-1α to the ERRα and ERRγ Nuclear Receptor Homodimers Involves a Similar Recognition Mechanism

D. Svergun, D. Moras, Y. Chebaro, 2013, PloS one.

Structure-Based Design of Benzoxazoles as new Inhibitors for D-Alanyl - D-Alanine Ligase

Françoise Van Bambeke, Paul M. Tulkens, Isabelle Tytgat, 2009 .

Histone H3 Tails Containing Dimethylated Lysine and Adjacent Phosphorylated Serine Modifications Adopt a Specific Conformation during Mitosis and Meiosis

R. Stote, L. Tora, M. Oulad-Abdelghani, 2008, Molecular and Cellular Biology.

Dynamics of β3 integrin I‐like and hybrid domains: Insight from simulations on the mechanism of transition between open and closed forms

Annick Dejaegere, Thomas Gaillard, R. Stote, 2009, Proteins.

Recurrent activating mutations of PPARγ associated with luminal bladder tumors

Y. Allory, F. Radvanyi, H. Lang, 2019, Nature Communications.

Interaction of a Model Peptide on Gram Negative and Gram Positive Bacterial Sliding Clamps.

B. Lorber, J. Wagner, P. Dumas, 2019, ACS infectious diseases.

Differential modes of peptide binding onto replicative sliding clamps from various bacterial origins.

B. Lorber, J. Wagner, V. Olieric, 2014, Journal of medicinal chemistry.

Recent Research Developments in Protein Engineering

S. G. Pandalai, Roland H. Stote, Annick Dejaegere, 2001 .

Molecular dynamics for computational proteomics of methylated histone H3.

R. Stote, A. Dejaegere, Cédric Grauffel, 2015, Biochimica et biophysica acta.

Effects of loop conformation on pKa and ligand binding in DNA gyrase B

Roland H. Stote, Annick Dejaegere, R. Stote, 2004 .

Critical Role of Desolvation in the Binding of 20-Hydroxyecdysone to the Ecdysone Receptor*

R. Stote, D. Moras, A. Dejaegere, 2007, Journal of Biological Chemistry.

Allosteric Regulation in the Ligand Binding Domain of Retinoic Acid Receptorγ

Roland H. Stote, Annick Dejaegere, Yassmine Chebaro, 2017, PloS one.

Phosphorylation of the Retinoic Acid Receptor Alpha Induces a Mechanical Allosteric Regulation and Changes in Internal Dynamics

Roland H. Stote, Annick Dejaegere, Yassmine Chebaro, 2013, PLoS Comput. Biol..

A revisited version of the apo structure of the ligand-binding domain of the human nuclear receptor RXR-ALPHA

D. Moras, A. Dejaegere, W. Bourguet, 2019 .

A revisited version of the apo structure of the ligand-binding domain of the human nuclear receptor retinoic X receptor α.

D. Moras, A. Dejaegere, W. Bourguet, 2019, Acta crystallographica. Section F, Structural biology communications.

Force field parameters for the simulation of modified histone tails

Roland H. Stote, Annick Dejaegere, Cédric Grauffel, 2010, J. Comput. Chem..

Pisa: A new model for the estimation of intermolecular interaction energies in the liquid state

A. Dejaegere, J. Reisse, M. Claessens, 2010 .

Advances in Vitamin D Receptor Function and Evolution Based on the 3D Structure of the Lamprey Ligand-Binding Domain.

N. Rochel, A. Dejaegere, Laurent Bianchetti, 2022, Journal of medicinal chemistry.

Recurrent activating mutations of PPAR gamma associated with luminal bladder tumors.

Y. Allory, F. Radvanyi, H. Lang, 2019 .

Protein Structural Statistics with PSS

Roland H. Stote, Annick Dejaegere, Thomas Gaillard, 2013, J. Chem. Inf. Model..

Design, synthesis, and functional evaluation of leukocyte function associated antigen-1 antagonists in early and late stages of cancer development.

R. Stote, X. López, D. Pantoja-Uceda, 2013, Journal of medicinal chemistry.

Agonistic and potentiating effects of perfluoroalkyl substances (PFAS) on the Atlantic cod (Gadus morhua) peroxisome proliferator-activated receptors (Ppars).

R. Stote, A. Dejaegere, O. Karlsen, 2022, Environment international.

Quantitative sampling of conformational heterogeneity of a DNA hairpin using molecular dynamics simulations and ultrafast fluorescence spectroscopy

R. Stote, Y. Mély, S. Haacke, 2016, Nucleic acids research.

Unrolr: Structural analysis of protein conformations using stochastic proximity embedding

Roland H. Stote, Annick Dejaegere, Jérôme Eberhardt, 2018, J. Comput. Chem..

“Dimerization of the Mineralocorticoid Receptor Ligand Binding Domain by helix 9, 10 and the F-domain”

A. Dejaegere, Laurent Bianchetti, D. Sinar, 2020, bioRxiv.

Self-Associating Peptides for Modular Bifunctional Conjugation of Tetramer Macromolecules in Living Cells.

M. Vigneron, Y. Nominé, A. Dejaegere, 2019, Bioconjugate chemistry.

Density Functional Study of Ribose and Deoxyribose Chemical Shifts

D. Case, A. Dejaegere, 1998 .

Structural insights into the molecular mechanism of vitamin D receptor activation by lithocholic acid involving a new mode of ligand recognition.

R. Stote, N. Rochel, A. Dejaegere, 2014, Journal of medicinal chemistry.

On the affinity regulation of the metal-ion-dependent adhesion sites in integrins.

Annick Dejaegere, Xabier Lopez, Roland H Stote, 2006, Journal of the American Chemical Society.

PSSweb: protein structural statistics web server

Roland H. Stote, Annick Dejaegere, Thomas Gaillard, 2016, Nucleic Acids Res..

Interaction of a Model Peptide on Gram Negative and Gram Positive Bacterial Sliding Clamps.

B. Lorber, J. Wagner, P. Dumas, 2019, ACS infectious diseases.

UvA-DARE (Digital Academic Repository) Allostery in Its Many Disguises: From Theory to Applications

S. Wodak, M. Wyart, Chung-Jung Tsai, 2022 .