P. Tamamis

发表

A high-throughput and rapid computational method for screening of RNA post-transcriptional modifications that can be recognized by target proteins.

Asuka A. Orr, Lydia M. Contreras, J. González-Rivera, 2018, Methods.

Forcefield_NCAA: Ab Initio Charge Parameters to Aid in the Discovery and Design of Therapeutic Proteins and Peptides with Unnatural Amino Acids and Their Application to Complement Inhibitors of the Compstatin Family

George A. Khoury, C. Floudas, J. Smadbeck, 2014, ACS synthetic biology.

Molecular Mechanism for Attractant Signaling to DHMA by E. coli Tsr.

Asuka A. Orr, A. Jayaraman, P. Tamamis, 2019, Biophysical journal.

Elucidating a Key Anti-HIV-1 and Cancer-Associated Axis: The Structure of CCL5 (Rantes) in Complex with CCR5

C. Floudas, P. Tamamis, 2014, Scientific Reports.

Amyloid-like self-assembly of a dodecapeptide sequence from the adenovirus fiber shaft: Perspectives from molecular dynamics simulations

Phanourios Tamamis, Georgios Archontis, P. Tamamis, 2011 .

Self-assembly of phenylalanine oligopeptides: insights from experiments and simulations.

Pawel Sikorski, Meital Reches, Phanourios Tamamis, 2009, Biophysical journal.

Designer Amyloid Cell-Penetrating Peptides for Potential Use as Gene Transfer Vehicles

Asuka A. Orr, P. Tamamis, A. Kretsovali, 2019, Biomolecules.

Novel compstatin family peptides inhibit complement activation by drusen-like deposits in human retinal pigmented epithelial cell cultures.

Christodoulos A Floudas, Phanourios Tamamis, Chris A Kieslich, 2013, Experimental eye research.

Molecular Recognition of CCR5 by an HIV-1 gp120 V3 Loop

C. Floudas, P. Tamamis, 2014, PloS one.

Combining Experimental Isotherms, Minimalistic Simulations, and a Model to Understand and Predict Chemical Adsorption onto Montmorillonite Clays

Asuka A. Orr, Sara E. Hearon, E. Pistikopoulos, 2021, ACS omega.

Uncovering the Binding and Specificity of β-Wrapins for Amyloid-β and α-Synuclein.

Asuka A. Orr, P. Tamamis, W. Hoyer, 2016, The journal of physical chemistry. B.

Computational design of amyloid self-assembling peptides bearing aromatic residues and the cell adhesive motif Arg-Gly-Asp

V. T. Forsyth, Asuka A. Orr, E. Mitchell, 2017 .

Insights into the mechanism of C5aR inhibition by PMX53 via implicit solvent molecular dynamics simulations and docking

G. Nikiforovich, C. Kieslich, D. Morikis, 2014, BMC biophysics.

Structure-Dependent Modulation of Aryl Hydrocarbon Receptor-Mediated Activities by Flavonoids

Asuka A. Orr, A. Jayaraman, S. Safe, 2018, Toxicological sciences : an official journal of the Society of Toxicology.

Molecular Modeling of Chemoreceptor:Ligand Interactions.

Asuka A. Orr, A. Jayaraman, P. Tamamis, 2018, Methods in molecular biology.

High-Efficiency Fluorescence through Bioinspired Supramolecular Self-Assembly

Asuka A. Orr, I. Slutsky, E. Gazit, 2020, ACS nano.

Computational evolution of an RNA-binding protein towards enhanced oxidized-RNA binding

Joseph M Jakubowski, Asuka A. Orr, Sean M. Engels, 2019, Computational and structural biotechnology journal.

Enhanced Fluorescence for Bioassembly by Environment‐Switching Doping of Metal Ions

Asuka A. Orr, E. Gazit, P. Tamamis, 2020, Advanced functional materials.

New Compstatin Peptides Containing N-Terminal Extensions and Non-Natural Amino Acids Exhibit Potent Complement Inhibition and Improved Solubility Characteristics

Christodoulos A. Floudas, George A. Khoury, Phanourios Tamamis, 2014, Journal of medicinal chemistry.

Protection of Oxygen-Sensitive Enzymes by Peptide Hydrogel.

Asuka A. Orr, L. Adler-Abramovich, P. Tamamis, 2021, ACS nano.

Isoflavones as Ah Receptor Agonists in Colon-Derived Cell Lines: Structure-Activity Relationships.

Asuka A. Orr, Kyongbum Lee, A. Jayaraman, 2019, Chemical research in toxicology.

Enhanced adsorption of per- and polyfluoroalkyl substances (PFAS) by edible, nutrient-amended montmorillonite clays.

Joseph M Jakubowski, Asuka A. Orr, Sara E. Hearon, 2020, Water research.

Computational design of a β-wrapin's N-terminal domain with canonical and non-canonical amino acid modifications mimicking curcumin's proposed inhibitory function.

Asuka A. Orr, P. Tamamis, Sarah K. Kuhlmann, 2022, Biophysical chemistry.

Modification of a Single Atom Affects the Physical Properties of Double Fluorinated Fmoc-Phe Derivatives

Asuka A. Orr, Y. Shacham-Diamand, L. Adler-Abramovich, 2021, International journal of molecular sciences.

Design of a modified mouse protein with ligand binding properties of its human analog by molecular dynamics simulations: The case of C3 inhibition by compstatin

Phanourios Tamamis, Dimitrios Morikis, Georgios Archontis, 2011, Proteins.

Activation of COUP-TFI by a Novel Diindolylmethane Derivative

Asuka A. Orr, Chien-Cheng Chen, P. Tamamis, 2019, Cells.

Interactions between Curcumin Derivatives and Amyloid-β Fibrils: Insights from Molecular Dynamics Simulations

Phanourios Tamamis, Joseph M Jakubowski, Asuka A. Orr, 2019, J. Chem. Inf. Model..

Elucidating a Key Component of Cancer Metastasis: CXCL12 (SDF-1α) Binding to CXCR4

Christodoulos A. Floudas, Phanourios Tamamis, C. Floudas, 2014, J. Chem. Inf. Model..

Amyloid Peptide Scaffolds Coordinate with Alzheimer's Disease Drugs.

Joseph M Jakubowski, P. Tamamis, S. V. R. Jonnalagadda, 2019, The journal of physical chemistry. B.

Computational Design of Functional Amyloid Materials with Cesium Binding, Deposition, and Capture Properties.

Asuka A. Orr, P. Tamamis, A. Mitraki, 2018, The journal of physical chemistry. B.

A novel amyloid designable scaffold and potential inhibitor inspired by GAIIG of amyloid beta and the HIV‐1 V3 loop

Joseph M Jakubowski, Asuka A. Orr, E. Mitchell, 2018, FEBS letters.

Editor’s Highlight: Microbial-Derived 1,4-Dihydroxy-2-naphthoic Acid and Related Compounds as Aryl Hydrocarbon Receptor Agonists/Antagonists Structure–Activity Relationships and Receptor Modeling

Asuka A. Orr, A. Jayaraman, S. Safe, 2017, Toxicological sciences : an official journal of the Society of Toxicology.

Insights into the interactions of bisphenol and phthalate compounds with unamended and carnitine-amended montmorillonite clays

Phanourios Tamamis, Timothy D. Phillips, Asuka A. Orr, 2020, Comput. Chem. Eng..

Montmorillonites Can Tightly Bind Glyphosate and Paraquat Reducing Toxin Exposures and Toxicity

Asuka A. Orr, P. Tamamis, T. Phillips, 2019, ACS omega.

Highly Accurate Structure-Based Prediction of HIV-1 Coreceptor Usage Suggests Intermolecular Interactions Driving Tropism

Christodoulos A. Floudas, Yannis A. Guzman, Melis Onel, 2016, PLoS ONE.

Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double‐blind predictions during the CASP11 experiment

Christodoulos A Floudas, Yannis A. Guzman, George A. Khoury, 2017, Proteins.

Molecular Dynamics in Drug Design: New Generations of Compstatin Analogs

Christodoulos A Floudas, Phanourios Tamamis, Dimitrios Morikis, 2012, Chemical biology & drug design.

Self‐Assembled Peptide Nano‐Superstructure towards Enzyme Mimicking Hydrolysis

Asuka A. Orr, E. Gazit, L. Shimon, 2021, Angewandte Chemie.

Self-assembled peptide nano-superstructure towards enzyme mimicking hydrolysis.

Asuka A. Orr, E. Gazit, L. Shimon, 2021, Angewandte Chemie.

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Adam Liwo, Yi He, Jilong Li, 2018, Scientific Reports.

Development and characterization of chlorophyll-amended montmorillonite clays for the adsorption and detoxification of benzene.

P. Tamamis, T. Phillips, Meichen Wang, 2022, Water research.

Montmorillonite clay-based sorbents decrease the bioavailability of per- and polyfluoroalkyl substances (PFAS) from soil and their translocation to plants.

Asuka A. Orr, Sara E. Hearon, P. Tamamis, 2021, Environmental research.

Peptide Self-Assembled Nanocarriers for Cancer Drug Delivery

E. Gazit, P. Tamamis, Yu Chen, 2023, The journal of physical chemistry. B.

Princeton_TIGRESS: Protein geometry refinement using simulations and support vector machines

Christodoulos A Floudas, George A. Khoury, George A Khoury, 2014, Proteins.

Computational and Experimental Protocols to Study Cyclo-dihistidine Self- and Co-assembly: Minimalistic Bio-assemblies with Enhanced Fluorescence and Drug Encapsulation Properties.

Asuka A. Orr, E. Gazit, P. Tamamis, 2022, Methods in molecular biology.

Self-Assembled Amyloid Peptides with Arg-Gly-Asp (RGD) Motifs As Scaffolds for Tissue Engineering.

E. Mitchell, P. Tamamis, E. Mossou, 2017, ACS biomaterials science & engineering.

Molecular recognition of CXCR4 by a dual tropic HIV-1 gp120 V3 loop.

Christodoulos A Floudas, Phanourios Tamamis, C. Floudas, 2013, Biophysical journal.

Virtual Screening of Chemical Compounds for Discovery of Complement C3 Ligands

Asuka A. Orr, C. Kieslich, D. Morikis, 2018, ACS omega.

Self‐Assembling Amyloid Sequences as Scaffolds for Material Design: A Case Study of Building Blocks Inspired From the Adenovirus Fiber Protein

P. Tamamis, A. Mitraki, C. Kokotidou, 2019, Macromolecular Symposia.

Combination of theoretical and experimental approaches for the design and study of fibril-forming peptides.

P. Tamamis, A. Mitraki, G. Archontis, 2014, Methods in molecular biology.

Species specificity of the complement inhibitor compstatin investigated by all‐atom molecular dynamics simulations

Christodoulos A Floudas, Phanourios Tamamis, Dimitrios Morikis, 2010, Proteins.

Characterization of epitranscriptome reader proteins experimentally and in silico: Current knowledge and future perspectives beyond the YTH domain

Lydia M. Contreras, L. Contreras, P. Tamamis, 2023, Computational and structural biotechnology journal.

UV resonance Raman study of TTR(105-115) structural evolution as a function of temperature.

P. Tamamis, G. Archontis, G Archontis, 2011, The journal of physical chemistry. B.

Elucidating the multi-targeted anti-amyloid activity and enhanced islet amyloid polypeptide binding of β-wrapins

Phanourios Tamamis, Wolfgang Hoyer, Asuka A. Orr, 2018, Comput. Chem. Eng..

Self-assembly of an aspartate-rich sequence from the adenovirus fiber shaft: insights from molecular dynamics simulations and experiments.

Phanourios Tamamis, Estelle Mossou, Michalis Kassinopoulos, 2014, The journal of physical chemistry. B.

Hydroxylated Chalcones as Aryl Hydrocarbon Receptor Agonists: Structure-Activity Effects.

A. Jayaraman, S. Safe, P. Tamamis, 2020, Toxicological sciences : an official journal of the Society of Toxicology.

Insights into the Structure, Correlated Motions, and Electrostatic Properties of Two HIV-1 gp120 V3 Loops

Phanourios Tamamis, Dimitrios Morikis, Chris A. Kieslich, 2012, PloS one.

Self-assembly of phenylalanine oligopeptides: insights from experiments and simulations.

L. Serpell, P. Sikorski, E. Gazit, 2009, Biophysical journal.

Molecular recognition of CXCR4 by a dual tropic HIV-1 gp120 V3 loop.

C. Floudas, P. Tamamis, 2013, Biophysical journal.

EDTA-mimicking amino acid–metal ion coordination for multifunctional packings

Deqing Mei, Rusen Yang, Yan-cheng Wang, 2021, Journal of Materials Chemistry A.

Conformational analysis of compstatin analogues with molecular dynamics simulations in explicit water.

John D Lambris, D. Morikis, P. Tamamis, 2007, Journal of molecular graphics & modelling.

Co-Assembly of Cancer Drugs with Cyclo-HH Peptides: Insights from Simulations and Experiments

E. Gazit, P. Tamamis, Omshanker Tiwari, 2024, ACS applied bio materials.

Green-engineered clay- and carbon-based composite materials for the adsorption of benzene from air.

P. Tamamis, Meichen Wang, Kelly J. Rivenbark, 2023, Journal of environmental chemical engineering.

Sequence-based identification of amyloidogenic β-hairpins reveals a prostatic acid phosphatase fragment promoting semen amyloid formation

P. Tamamis, W. Hoyer, M. Schwarten, 2023, Computational and structural biotechnology journal.