Justin Spiriti

发表

Applications of Adaptive Umbrella Sampling in Biomolecular Simulation

Justin Spiriti, 2011 .

Development and application of enhanced sampling techniques to simulate the long‐time scale dynamics of biomolecular systems

Arjan van der Vaart, Hiqmet Kamberaj, Justin Spiriti, 2012 .

Should virus capsids assemble perfectly? Theory and observation of defects

Justin Spiriti, D. Zuckerman, J. Conway, 2019, bioRxiv.

Cy3-DNA stacking interactions strongly depend on the identity of the terminal basepair.

A. van der Vaart, Justin Spiriti, M. Levitus, 2011, Biophysical journal.

Structural integrity of the ribonuclease H domain in HIV‐1 reverse transcriptase

Justin Spiriti, D. Zuckerman, R. Ishima, 2015, Proteins.

Modulation of protein stability by O-glycosylation in a designed Gc-MAF analog.

Justin Spiriti, Giovanna Ghirlanda, A. van der Vaart, 2008, Biophysical chemistry.

Simulation of ligand dissociation kinetics from the protein kinase PYK2

Chung F. Wong, F. Noé, Justin Spiriti, 2022, J. Comput. Chem..

Should Virus Capsids Assemble Perfectly? A Simple Equilibrium Model for Defects

Justin Spiriti, D. Zuckerman, J. Conway, 2019, Biophysical Journal.

Middle-way flexible docking: Pose prediction using mixed-resolution Monte Carlo in estrogen receptor α

Daniel M. Zuckerman, Rohith Palli, Sundar Raman Subramanian, 2018, bioRxiv.

Tabulation as a high-resolution alternative to coarse-graining protein interactions: Initial application to virus capsid subunits.

Daniel M Zuckerman, Justin Spiriti, Justin Spiriti, 2015, The Journal of chemical physics.

DNA Bending through Roll Angles Is Independent of Adjacent Base Pairs.

A. van der Vaart, Justin Spiriti, 2012, The journal of physical chemistry letters.

DNA Binding and Bending by Sac7d is Stepwise

A. van der Vaart, Justin Spiriti, 2013, Chembiochem : a European journal of chemical biology.

Mechanism of the calcium-induced trans-cis isomerization of a non-prolyl peptide bond in Clostridium histolyticum collagenase.

Justin Spiriti, A. van der Vaart, Justin Spiriti, 2010, Biochemistry.

Qualitative Prediction of Ligand Dissociation Kinetics from Focal Adhesion Kinase Using Steered Molecular Dynamics

Chung F. Wong, Justin Spiriti, 2021, Life.

Entire-Dataset Analysis of NMR Fast-Exchange Titration Spectra: A Mg2+ Titration Analysis for HIV-1 Ribonuclease H Domain.

M. Oda, Justin Spiriti, K. Kanaori, 2016, The journal of physical chemistry. B.

DNA Bending through Large Angles Is Aided by Ionic Screening.

M. Thorpe, H. Kamberaj, A. van der Vaart, 2012, Journal of chemical theory and computation.

Tunable Coarse Graining for Monte Carlo Simulations of Proteins via Smoothed Energy Tables: Direct and Exchange Simulations

Daniel M. Zuckerman, Justin Spiriti, Justin Spiriti, 2014, Journal of chemical theory and computation.