A. Baranger

发表

Molecular dynamics simulation studies of a protein–RNA complex with a selectively modified binding interface

Ying Zhao, D. Beveridge, Ying Zhao, 2006, Biopolymers.

A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations.

D. Beveridge, B. L. Kormos, A. Baranger, 2007, Journal of structural biology.

Undergraduate research experiences: Impacts and opportunities

M. Linn, A. Baranger, E. Stone, 2015, Science.

Molecular dynamics and thermodynamics of protein-RNA interactions: mutation of a conserved aromatic residue modifies stacking interactions and structural adaptation in the U1A-stem loop 2 RNA complex.

D. Beveridge, K. McConnell, A. Baranger, 2001, Journal of the American Chemical Society.

Design of an adenosine analogue that selectively improves the affinity of a mutant U1A protein for RNA.

Ying Zhao, A. Baranger, 2003, Journal of the American Chemical Society.

Affinity and specificity of protein U1A-RNA complex formation based on an additive component free energy model.

D. Beveridge, B. L. Kormos, A. Baranger, 2007, Journal of molecular biology.

Molecular Dynamics Simulations and Free Energy Calculations on Protein-Nucleic Acid Complexes

D. Beveridge, B. L. Kormos, A. Baranger, 2006 .

Multistep kinetics of the U1A-SL2 RNA complex dissociation.

M. Gruebele, A. Baranger, A. Dhar, 2011, Journal of molecular biology.

Teaching students the complexity of green chemistry and assessing growth in attitudes and understanding

A. Baranger, Laura B. Armstrong, Mariana C. Rivas, 2018, Current Opinion in Green and Sustainable Chemistry.

Reaction of Carbon Dioxide and Heterocumulenes with an Unsymmetrical Metal-Metal Bond. Direct Addition of Carbon Dioxide across a Zirconium-Iridium Bond and Stoichiometric Reduction of Carbon Dioxide to Formate

A. Baranger, R. Bergman, T. Hanna, 1995 .

Developing bivalent ligands to target CUG triplet repeats, the causative agent of myotonic dystrophy type 1.

Kali A. Miller, A. Baranger, S. Zimmerman, 2013, Journal of medicinal chemistry.

High Energy Channeling and Malleable Transition States: Molecular Dynamics Simulations and Free Energy Landscapes for the Thermal Unfolding of Protein U1A and 13 Mutants

N. Dang, D. Beveridge, A. Baranger, 2022, Biomolecules.

"Ultraviolet footprinting" accurately maps sequence-specific contacts and DNA kinking in the EcoRI endonuclease-DNA complex.

A. Baranger, L. Jen-Jacobson, M. Kurpiewski, 1988, Proceedings of the National Academy of Sciences of the United States of America.

TRANSFER OF OXYGEN AND SULFUR FROM ORGANIC MOLECULES TO A ZR-IR BOND. EVIDENCE FOR AN UNUSUALLY RAPID ATOM ABSTRACTION REACTION

A. Baranger, R. Bergman, T. Hanna, 1995 .

Sense of belonging within the graduate community of a research-focused STEM department: Quantitative assessment using a visual narrative and item response theory

A. Baranger, Christiane N. Stachl, 2020, PloS one.

LEAD COMPOUND DISCOVERY FOR MYOTONIC DYSTROPHY BY YEN-JUN HO THESIS Submitted in partial fulfillment of the requirements for the degree of Master of Science in Chemistry in the Graduate College of the University of Illinois-Urbana-Champaign, 2013

A. Baranger, S. Zimmerman, Chun-Ho Wong, 2013 .

Extraction and Antibacterial Properties of Thyme Leaf Extracts: Authentic Practice of Green Chemistry

A. Baranger, E. Rivera, Laura B. Armstrong, 2016 .

Identification of small molecule inhibitors of the HIV-1 nucleocapsid-stem-loop 3 RNA complex.

A. Baranger, Douglas M. Warui, Douglas M Warui, 2012, Journal of medicinal chemistry.

Accessory factor-bZIP-DNA interactions.

A. Baranger, 1998, Current opinion in chemical biology.

RNA-DNA hybrids containing damaged DNA are substrates for RNase H.

A. Baranger, B. Jerkovič, P. Bolton, 2001, Bioorganic & medicinal chemistry letters.

Inhibition of the U1A-RNA complex by an aminoacridine derivative.

A. Baranger, Alicia Y Gayle, 2002, Bioorganic & medicinal chemistry letters.

Recognition of essential purines by the U1A protein

A. Baranger, Yulia Benitex, 2007, BMC Biochemistry.

Design and Evaluation of the BeArS@home and Slugs@home Choose-Your-Own-Adventure-Style Online Laboratory Experiments

A. Shusterman, A. Baranger, Daniel G Droege, 2022, Journal of Chemical Education.

COOPERATIVE REACTIVITY IN THE INTERACTIONS OF X-H BONDS WITH A ZIRCONIUM-IRIDIUM BRIDGING IMIDO COMPLEX

A. Baranger, R. Bergman, 1994 .

Synthesis of an early-late heterobimetallic imido complex: cooperative reactivity with nitrogen-, oxygen-, and sulfur-hydrogen bonds and formation of a novel aminophosphine complex

A. Baranger, R. Bergman, F. Hollander, 1993 .

Variable regiochemistry in the stoichiometric and catalytic hydroamination of alkynes by imidozirconium complexes caused by an unusual dependence of the rate law on alkyne structure and temperature

A. Baranger, P. Walsh, R. Bergman, 1993 .

Stoichiometric and catalytic hydroamination of alkynes and allene by zirconium bisamides Cp2Zr(NHR)2

A. Baranger, P. Walsh, R. Bergman, 1992 .

Formation of .alpha.,.beta.-Unsaturated Imines and Successful Trapping of Oxozirconocene in a [4 + 2] Azaoxametallacyclohexene Retrocycloaddition

A. Baranger, P. Walsh, R. Bergman, 1995 .

Cooperative binding of a quinoline derivative to an RNA stem loop containing a dangling end.

A. Baranger, S. R. Ramisetty, 2010, Bioorganic & medicinal chemistry letters.

Addition of Organic 1,3‐Dipolar Compounds across a Heterobinuclear Bond between Early and Late Transition Metals: Mechanism of Nitrogen Loss from an Organoazido Complex To Form a Bridging Imido Complex

A. Baranger, R. Bergman, T. Hanna, 1996 .

Characterization of two adenosine analogs as fluorescence probes in RNA.

Ying Zhao, A. Baranger, J. Knee, 2008, Bioorganic chemistry.

Reactivity of Zirconocene Azametallacyclobutenes: Insertion of Aldehydes, Carbon Monoxide, and Formation of alpha,beta-Unsaturated Imines. Formation and Trapping of [Cp(2)Zr=O] in a [4 + 2] Retrocycloaddition(1).

A. Baranger, R. Bergman, T. Hanna, 1996, The Journal of organic chemistry.

Identification of specific small molecule ligands for stem loop 3 ribonucleic acid of the packaging signal Psi of human immunodeficiency virus-1.

A. Baranger, Douglas M. Warui, Douglas M Warui, 2009, Journal of medicinal chemistry.

Identification of an aminoacridine derivative that binds to RNA tetraloops.

D. Beveridge, A. Baranger, David L Beveridge, 2007, Journal of medicinal chemistry.

Molecular recognition of a thymine bulge by a high affinity, deazaguanine-based hydrogen-bonding ligand.

A. Baranger, S. Zimmerman, J. Arambula, 2009, Chemical communications.

Developing a Green Chemistry Focused General Chemistry Laboratory Curriculum: What Do Students Understand and Value about Green Chemistry?

A. Baranger, Laura B. Armstrong, Mariana C. Rivas, 2019, Journal of Chemical Education.

TRY plant trait database - enhanced coverage and open access.

Denis Bastianelli, Yuanzhi Li, Ben Somers, 2019, Global change biology.

A Novel CUGexp·MBNL1 Inhibitor with Therapeutic Potential for Myotonic Dystrophy Type 1

Kali A. Miller, A. Baranger, S. Zimmerman, 2013, ACS chemical biology.

Mechanism of DNA-binding enhancement by the human T-cell leukaemia virus transactivator Tax

A. Schepartz, A. Baranger, H. Giebler, 1995, Nature.

Investigation of a conserved stacking interaction in target site recognition by the U1A protein.

A. Baranger, S. J. Nolan, J. Shiels, 2002, Nucleic acids research.

U1A protein-stem loop 2 RNA recognition: prediction of structural differences from protein mutations.

D. Beveridge, S. Pieniazek, B. L. Kormos, 2011, Biopolymers.

Molecular dynamics simulation studies of induced fit and conformational capture in U1A-RNA binding: do molecular substates code for specificity?

D. Beveridge, A. Baranger, F. Pitici, 2002, Biopolymers.

Investigating the Binding Mode of an Inhibitor of the MBNL1⋅RNA Complex in Myotonic Dystrophy Type 1 (DM1) Leads to the Unexpected Discovery of a DNA‐Selective Binder

A. Baranger, S. Zimmerman, Chun-Ho Wong, 2012, Chembiochem : a European journal of chemical biology.

Native conformational dynamics of the spliceosomal U1A protein.

Z. Luthey-Schulten, M. Gruebele, A. Baranger, 2015, The journal of physical chemistry. B.

Substitution of an essential adenine in the U1A-RNA complex with a non-polar isostere.

A. Baranger, J. Shiels, Jacob B Tuite, 2002, Nucleic acids research.

Topography consistently drives intra‐ and inter‐specific leaf trait variation within tree species complexes in a Neotropical forest

É. Marcon, A. Baranger, M. Heuertz, 2020 .

“When I talk about it, my eyes light up!” Impacts of a national laboratory internship on community college student success

A. Baranger, Seth Van Doren, Laleh E. Coté, 2023, bioRxiv.

Measuring integrated understanding of undergraduate chemistry research experiences: Assessing oral and written research artifacts

M. Linn, A. Baranger, E. Stone, 2021, Chemistry Education Research and Practice.

Targeting Toxic RNAs that Cause Myotonic Dystrophy Type 1 (DM1) with a Bisamidinium Inhibitor

A. Baranger, W. Chan, H. Tsoi, 2014, Journal of the American Chemical Society.

Improving the Academic Climate of an R1 STEM Department: Quantified Positive Shifts in Perception

A. Baranger, M. Francis, Jamie M Gleason, 2021, ACS omega.

Selective inhibition of MBNL1–CCUG interaction by small molecules toward potential therapeutic agents for myotonic dystrophy type 2 (DM2)†

A. Baranger, S. R. Ramisetty, S. Zimmerman, 2011, Nucleic acids research.

MBNL1–RNA Recognition: Contributions of MBNL1 Sequence and RNA Conformation

A. Baranger, S. R. Ramisetty, Yuan Fu, 2012, Chembiochem : a European journal of chemical biology.

A simple ligand that selectively targets CUG trinucleotide repeats and inhibits MBNL protein binding

A. Baranger, S. R. Ramisetty, S. Zimmerman, 2009, Proceedings of the National Academy of Sciences.

Mismatch in Perceptions of Success: Investigating Academic Values among Faculty and Doctoral Students

A. Baranger, M. Francis, Jamie M Gleason, 2021, Journal of Chemical Education.

Binding of an aminoacridine derivative to a GAAA RNA tetraloop.

A. Baranger, Z. Yan, 2004, Bioorganic & medicinal chemistry letters.

Translatable Research Group-Based Undergraduate Research Program for Lower-Division Students

A. Alivisatos, A. Baranger, J. J. Calvin, 2019, Journal of Chemical Education.

Research Group-Led Undergraduate Research Program: Analyzing and Improving a Versatile Springboard for First-Year Undergraduates

A. Alivisatos, A. Baranger, J. J. Calvin, 2021, Journal of Chemical Education.

Contribution of RNA Conformation to the Stability of a High-Affinity RNA−Protein Complex

A. Baranger, Sarah J. Luchansky, and Scott J. Nolan, 2000 .

Impaired ristocetin–induced Platelet Aggregation in Whole Blood Assessed with a Multiplate© Analyser Suggests a New Mechanism of Antiplatelet Effect of Aspirin and Clopidogrel,

G. Montalescot, A. Baranger, J. Collet, 2011 .

Coherent Phonons in Antimony: An Undergraduate Physical Chemistry Solid-State Ultrafast Laser Spectroscopy Experiment

S. Leone, A. Baranger, M. Zuerch, 2021, Journal of Chemical Education.

Recognition of an Essential Adenine at a Protein−RNA Interface: Comparison of the Contributions of Hydrogen Bonds and a Stacking Interaction

A. Baranger, S. J. Nolan, J. Shiels, 1999 .

Metacognitive Regulation in Organic Chemistry Students: How and Why Students Use Metacognitive Strategies When Predicting Reactivity

A. Baranger, Katherine A. Blackford, Nikita S. Redkar, 2023, Chemistry Education Research and Practice.

Development of a Week-Long Mathematics Intervention for Incoming Chemistry Graduate Students

A. Baranger, Dipti Jasrasaria, Elliot Rossomme, 2023, Journal of chemical education.

Behind the Scenes of Teaching Green: An Iterative Approach to Curriculum Design and Implementation in the General Chemistry Laboratory

A. Baranger, Laura B. Armstrong, Mariana C. Rivas, 2024, Journal of Chemical Education.

The Undergraduate Teacher-Scholar Program: Comparing Near-Peer and Non Near-Peer Instructors in Laboratory Courses

A. Baranger, MaryAnn T. Robak, Sara M. Bourne, 2021, Journal of College Science Teaching.