C. Atilgan

发表

FbpA iron storage and release are governed by periplasmic microenvironments.

A. Atilgan, Ozge Sensoy, C. Atilgan, 2017, Physical chemistry chemical physics : PCCP.

Predicting long term cooperativity and specific modulators of receptor interactions in human transferrin from dynamics within a single microstate.

C. Atilgan, H. Abdizadeh, 2016, Physical chemistry chemical physics : PCCP.

Protonation states of remote residues affect binding-release dynamics of the ligand but not the conformation of apo ferric binding protein.

A. Atilgan, C. Atilgan, Gokce Guven, 2014, The journal of physical chemistry. B.

Structural analysis of the PATZ1 BTB domain homodimer

E. Mancini, B. Erman, C. Atilgan, 2020, bioRxiv.

Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication.

A. Atilgan, C. Atilgan, Deniz Turgut, 2006, Biophysical journal.

Manipulation of conformational change in proteins by single-residue perturbations.

A. Atilgan, S. Ozkan, C. Atilgan, 2010, Biophysical journal.

A Coarse-Grained Methodology Identifies Intrinsic Mechanisms That Dissociate Interacting Protein Pairs

A. Atilgan, C. Atilgan, H. Abdizadeh, 2020, Frontiers in Molecular Biosciences.

How orientational order governs collectivity of folded proteins

Canan Atilgan, Osman Burak Okan, A. Atilgan, 2010, Proteins.

Subtle pH differences trigger single residue motions for moderating conformations of calmodulin.

A. Atilgan, C. Atilgan, A. O. Aykut, 2011, The Journal of chemical physics.

Network-based models as tools hinting at nonevident protein functionality.

Ali Rana Atilgan, Canan Atilgan, Osman Burak Okan, 2012, Annual review of biophysics.

Perturbation response scanning specifies key regions in subtilisin serine protease for both function and stability

A. Atilgan, C. Atilgan, H. Abdizadeh, 2015, Journal of enzyme inhibition and medicinal chemistry.

Computational Methods for Efficient Sampling of Protein Landscapes and Disclosing Allosteric Regions.

C. Atilgan, 2018, Advances in protein chemistry and structural biology.

A Coarse-Grained Methodology Identifies Intrinsic Mechanisms That Dissociate Interacting Protein Pairs

A. Atilgan, C. Atilgan, H. Abdizadeh, 2020, bioRxiv.

High-Order Epistasis in Catalytic Power of Dihydrofolate Reductase Gives Rise to a Rugged Fitness Landscape in the Presence of Trimethoprim Selection

Ali Rana Atilgan, Canan Atilgan, Kimberly A. Reynolds, 2018, bioRxiv.

Noncovalent intramolecular interactions in the monomers and oligomers of the acceptor and donor type of low band gap conducting polymers

Canan Atilgan, C. Atilgan, A. S. Özen, 2007 .

Complete mapping of the morphologies of some linear and graft fluorinated co-oligomers in an aprotic solvent by dissipative particle dynamics.

Canan Atilgan, C. Atilgan, Unal Sen, 2006, The Journal of chemical physics.

Multi-scale modelling of carbon nanotube reinforced crosslinked interfaces

C. Atilgan, J. Elliott, Elif Ozden-Yenigun, 2017 .

Could network structures generated with simple rules imposed on a cubic lattice reproduce the structural descriptors of globular proteins?

Osman Burak Okan, A. Atilgan, C. Atilgan, 2020, bioRxiv.

Residue Network Construction and Predictions of Elastic Network Models

A. Atilgan, C. Atilgan, I. Inanc, 2008, 0809.3715.

Mechanisms by Which Salt Concentration Moderates the Dynamics of Human Serum Transferrin.

A. Atilgan, C. Atilgan, H. Abdizadeh, 2017, The journal of physical chemistry. B.

Computational approaches for deciphering the equilibrium and kinetic properties of iron transport proteins.

A. Atilgan, C. Atilgan, H. Abdizadeh, 2017, Metallomics : integrated biometal science.

High-Order Epistasis in Catalytic Power of Dihydrofolate Reductase Gives Rise to a Rugged Fitness Landscape in the Presence of Trimethoprim Selection

Kimberly A. Reynolds, A. Atilgan, C. Atilgan, 2019, Molecular biology and evolution.

In silico mutational studies of Hsp70 disclose sites with distinct functional attributes

C. Atilgan, Gizem Ozbaykal, Ali Rana Atilgan, 2015, Proteins.

Calmodulin readily switches conformation upon protonating high pKa acidic residues.

A. Atilgan, C. Atilgan, S. Negi, 2012, Journal of Physical Chemistry B.

Localmotifs in proteins combine to generate global functionalmoves

A. Atilgan, C. Atilgan, 2012 .

Allosteric Modulation of Conformational Dynamics in Human Hsp90α: A Computational Study

David L. Penkler, C. Atilgan, Ö. T. Bishop, 2017, bioRxiv.

How a vicinal layer of solvent modulates the dynamics of proteins.

A. Atilgan, C. Atilgan, A. O. Aykut, 2007, Biophysical journal.

Inhibition of mutant RAS-RAF interaction by mimicking structural and dynamic properties of phosphorylated RAS

Ozge Sensoy, C. Atilgan, Metehan Ilter, 2022, bioRxiv.

How a vicinal layer of solvent modulates the dynamics of proteins.

A. Atilgan, C. Atilgan, A. O. Aykut, 2007, Biophysical journal.

DHFR Mutants Modulate Their Synchronized Dynamics with the Substrate by Shifting Hydrogen Bond Occupancies

A. Atilgan, C. Atilgan, Ebru Cetin, 2022, J. Chem. Inf. Model..

Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers

B. Erman, C. Atilgan, Ogun Adebali, 2022, Life Science Alliance.

Inhibition of mutant RAS-RAF 1 interaction by mimicking structural 2 and dynamic properties of 3 phosphorylated RAS 4

Ozge Sensoy, C. Atilgan, Metehan Ilter, 2022 .

Detailed molecular dynamics simulations of human transferrin provide insights into iron release dynamics at serum and endosomal pH

A. Atilgan, C. Atilgan, H. Abdizadeh, 2015, JBIC Journal of Biological Inorganic Chemistry.

Molecular basis for solvent dependent morphologies observed on electrosprayed surfaces.

C. Atilgan, E. Şimşek, Elif Ozden-Yenigun, 2013, Physical chemistry chemical physics : PCCP.

Surfactant formation efficiency of fluorocarbon-hydrocarbon oligomers in supercritical CO2.

Canan Atilgan, C. Atilgan, Hatice Can, 2009, The Journal of chemical physics.

Tuning Interaction Parameters of Thermoplastic Polyurethanes in a Binary Solvent To Achieve Precise Control over Microphase Separation

Oguzhan Oguz, Canan Atilgan, Senem Avaz Seven, 2019, J. Chem. Inf. Model..

Soft segment length controls morphology of poly(ethylene oxide) based segmented poly(urethane-urea) copolymers in a binary solvent

C. Atilgan, Hasan Kurt, O. Oguz, 2017 .

A trimethoprim derivative impedes antibiotic resistance evolution

A. Atilgan, C. Atilgan, D. Borek, 2021, Nature Communications.

Controlling the tacticity in the polymerization of N-isopropylacrylamide: A computational study

C. Atilgan, V. Aviyente, M. Waroquier, 2011 .

Blends of highly branched and linear poly(arylene ether sulfone)s: Multiscale effect of the degree of branching on the morphology and mechanical properties

C. Atilgan, K. Bilge, S. Unal, 2020 .

Relative Mobility of Human Transferrin Domains Accounts for Its Efficient Recognition and Recycling

A. Atilgan, C. Atilgan, H. Abdizadeh, 2014, 1411.5954.

Employment of Iron-Binding Protein from Haemophilus influenzae in Functional Nanopipettes for Iron Monitoring.

N. Pourmand, C. Atilgan, Z. Sayers, 2018, ACS chemical neuroscience.

Designing Molecular Dynamics Simulations to Shift Populations of the Conformational States of Calmodulin

Ali Rana Atilgan, Canan Atilgan, Ayse Ozlem Aykut, 2013, PLoS Comput. Biol..

Nanosecond motions in proteins impose bounds on the timescale distributions of local dynamics.

Osman Burak Okan, A. Atilgan, C. Atilgan, 2009, Biophysical journal.

Local motifs in proteins combine to generate global functional moves.

Ali Rana Atilgan, Canan Atilgan, A. Atilgan, 2012, Briefings in functional genomics.

Increased substrate affinity in the Escherichia coli L28R dihydrofolate reductase mutant causes trimethoprim resistance.

A. Atilgan, C. Atilgan, H. Abdizadeh, 2017, Physical chemistry chemical physics : PCCP.

Perturbation-Response Scanning Reveals Ligand Entry-Exit Mechanisms of Ferric Binding Protein

Ali Rana Atilgan, Canan Atilgan, A. Atilgan, 2009, PLoS Comput. Biol..

Perturbation-response scanning : Ligand entry-exit mechanisms of ferric binding protein *

A. Atilgan, C. Atilgan, 2008 .

On modifying properties of polymeric melts by nanoscopic particles

A. Atilgan, C. Atilgan, I. Inanc, 2012, 1207.2049.

MD-TASK: a software suite for analyzing molecular dynamics trajectories

David K. Brown, Özlem Tastan Bishop, Ali Rana Atilgan, 2017, Bioinform..

Computational strategies for protein conformational ensemble detection.

A. Atilgan, C. Atilgan, 2021, Current opinion in structural biology.

Unraveling the Motions behind Enterovirus 71 Uncoating.

A. Atilgan, Özlem Tastan Bishop, C. Atilgan, 2018, Biophysical journal.

Dynamic Community Composition Unravels Allosteric Communication in PDZ3

Tandac F. Guclu, A. Atilgan, C. Atilgan, 2020, bioRxiv.

N-terminus of the third PDZ Domain of PSD-95 Orchestrates Allosteric Communication for Selective Ligand Binding

Ali Rana Atilgan, Canan Atilgan, Tandac F. Guclu, 2020, bioRxiv.

Consistent picture of the reversible thermal unfolding of hen egg-white lysozyme from experiment and molecular dynamics.

B. Wallace, C. Atilgan, M. Koch, 2010, Biophysical journal.

Allosteric Modulation of Human Hsp90α Conformational Dynamics

Özlem Tastan Bishop, Canan Atilgan, David L. Penkler, 2018, J. Chem. Inf. Model..

Sibling rivalry among the ZBTB transcription factor family: homo vs. heterodimers

B. Erman, C. Atilgan, Ogun Adebali, 2021, bioRxiv.

Detailed molecular dynamics simulations of human transferrin provide insights into iron release dynamics at serum and endosomal pH

A. Atilgan, C. Atilgan, H. Abdizadeh, 2015, JBIC Journal of Biological Inorganic Chemistry.

Perturb-Scan-Pull: A Novel Method Facilitating Conformational Transitions in Proteins.

Ozge Sensoy, C. Atilgan, Farzaneh Jalalypour, 2020, Journal of chemical theory and computation.

Perturbation-Response Scanning Reveals Key Residues for Allosteric Control in Hsp70

David L. Penkler, C. Atilgan, Ö. T. Bishop, 2017, J. Chem. Inf. Model..

Driving Calmodulin Protein towards Conformational Shift by Changing Ionization States of Select Residues

A. Atilgan, C. Atilgan, S. Negi, 2012 .

Depth dependent dynamics in the hydration shell of a protein.

A. Atilgan, C. Atilgan, J. Servantie, 2009, The Journal of chemical physics.

MODE-TASK: large-scale protein motion tools

Michael Glenister, Özlem Tastan Bishop, Ali Rana Atilgan, 2017, bioRxiv.

Understanding the mode of action of ThDP in benzoylformate decarboxylase.

C. Atilgan, A. Demir, V. Aviyente, 2010, Biopolymers.

Effect of van der Waals Interaction Strength and Nanocluster Size on the Dynamical and Mechanical Properties of 1,4-cis-polybutadiene Melts

A. Atilgan, C. Atilgan, I. Inanc, 2012 .

Assortative Mixing in Close-Packed Spatial Networks

Ali Rana Atilgan, Deniz Turgut, Canan Atilgan, 2010, PloS one.

Nonlocal Effects of Antibiotic-Resistance-Causing Mutations Reveal an Alternative Region for Targeting on FtsW-Penicillin-Binding Protein 3 Complex of Haemophilus influenzae

C. Atilgan, Özge Şensoy, Almotasem Belah Alhamwi, 2023, J. Chem. Inf. Model..

Dynamical shifts in hydrogen bond occupancies identify mechanisms responsible for resistance conferring mutations

C. Atilgan, Erdal Toprak, Y. T. Tamer, 2022, Biophysical Journal.

COMPUTATIONAL ASSESSMENT OF THE EFFECT OF ALLOSTERIC MUTATIONS ON THE DYNAMICS OF PDZ DOMAINS

C. Atilgan, 2018 .

Kinetic Barrier to Enzyme Inhibition Is Manipulated by Dynamical Local Interactions in E. coli DHFR

Tandac F. Guclu, A. Atilgan, C. Atilgan, 2023, J. Chem. Inf. Model..

Allosteric Modulation of Fluorescence Revealed by Hydrogen Bond Dynamics in a Genetically Encoded Maltose Biosensor

C. Atilgan, Melike Berksoz, 2023, bioRxiv.

Perturbation-Response Scanning Reveals Key Residues for Allosteric Control in Hsp70

David L. Penkler, C. Atilgan, Ö. T. Bishop, 2017, J. Chem. Inf. Model..

End to an Era: Transfer of Power in Georgia

Canan Atilgan, David Aprasidze, C. Atilgan, 2013 .

Depth dependent dynamics in the hydration shell of a protein.

A. Atilgan, C. Atilgan, James Servantie, 2009, The Journal of chemical physics.

Multiscale modeling of poly(2-isopropyl-2-oxazoline) chains in aqueous solution

C. Atilgan, V. Aviyente, T. F. Özaltın, 2017 .