D. Logan

发表

Global structural motions from the strain of a single hydrogen bond

J. Danielsson, W. Awad, K. Saraboji, 2013, Proceedings of the National Academy of Sciences.

Structural Aspects of N-Glycosylations and the C-terminal Region in Human Glypican-1*

W. Awad, D. Logan, B. Adamczyk, 2015, The Journal of Biological Chemistry.

Small-angle X-ray scattering study of a Rex family repressor: conformational response to NADH and NAD+ binding in solution.

D. Svergun, D. Logan, T. Ikonen, 2011, Journal of molecular biology.

The Origin and Evolution of Ribonucleotide Reduction

B. Sjöberg, D. Logan, D. Lundin, 2015, Life.

Carbohydrate binding module recognition of xyloglucan defined by polar contacts with branching xyloses and CH‐Π interactions

D. Logan, M. Ohlin, L. Schantz, 2014, Proteins.

Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C

K. Saraboji, D. Logan, L. Coates, 2016, Acta crystallographica. Section D, Structural biology.

Crystal structure of human chondroadherin: solving a difficult molecular-replacement problem using de novo models.

D. Logan, A. Aspberg, S. Rämisch, 2017, Acta crystallographica. Section D, Structural biology.

Monosaccharide Derivatives with Low‐Nanomolar Lectin Affinity and High Selectivity Based on Combined Fluorine–Amide, Phenyl–Arginine, Sulfur–π, and Halogen Bond Interactions

D. Logan, M. Håkansson, U. Nilsson, 2018, ChemMedChem.

The Cost of Long Catalytic Loops in Folding and Stability of the ALS-Associated Protein SOD1.

J. Danielsson, D. Logan, M. Oliveberg, 2018, Journal of the American Chemical Society.

Elucidation of Hydrogen Bonding Patterns in Ligand-Free, Lactose- and Glycerol-Bound Galectin-3C by Neutron Crystallography to Guide Drug Design.

M. Akke, D. Logan, L. Coates, 2018, Journal of medicinal chemistry.

Synthesis of branched and linear 1,4-linked galactan oligosaccharides.

Maja G. Rydahl, D. Logan, W. Willats, 2018, Organic & biomolecular chemistry.

Three‐dimensional structures and functional studies of two GH43 arabinofuranosidases from Weissella sp. strain 142 and Lactobacillus brevis

E. Karlsson, D. Logan, Javier A. Linares-Pastén, 2017, The FEBS journal.

Structures of activin ligand traps using natural sets of type I and type II TGFβ receptors

A. Grinberg, D. Logan, Chandramohan Kattamuri, 2021, iScience.

The macromolecular crystallography beamline I911-3 at the MAX IV laboratory

C. Svensson, D. Logan, J. Unge, 2013, Journal of synchrotron radiation.

A nucleotide-sensing oligomerization mechanism that controls NrdR-dependent transcription of ribonucleotide reductases

B. Sjöberg, D. Logan, D. Lundin, 2022, Nature Communications.

Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex

D. Logan, Mikael C. Bauer, S. Linse, 2008, Molecular microbiology.

Dusquetide modulates innate immune response through binding to p62.

O. Donini, D. Logan, T. Kutateladze, 2022, Structure.

Interactive model building in neutron macromolecular crystallography.

D. Logan, 2019, Methods in enzymology.

Are crystallographic B-factors suitable for calculating protein conformational entropy?

U. Ryde, D. Logan, E. Oksanen, 2019, Physical chemistry chemical physics : PCCP.

Structure-based design and in vivo anti-arthritic activity evaluation of a potent dipeptidyl cyclopropyl nitrile inhibitor of cathepsin C.

A. Giełdoń, D. Logan, A. Lesner, 2019, Biochemical pharmacology.

Crystal structure of a mutant elongation factor G trapped with a GTP analogue

A. Liljas, Ranvir Singh, D. Logan, 2005, FEBS letters.

The engineered CD80 variant fusion therapeutic davoceticept combines checkpoint antagonism with conditional CD28 costimulation for anti-tumor immunity

D. Logan, S. Dillon, M. Maurer, 2022, Nature Communications.

Structural insights into fusidic acid resistance and sensitivity in EF-G.

A. Liljas, Ranvir Singh, D. Logan, 2005, Journal of molecular biology.

Purification, crystallization and preliminary X-ray diffraction analysis of human chondroadherin.

D. Heinegård, D. Logan, A. Pramhed, 2008, Acta crystallographica. Section F, Structural biology and crystallization communications.

Cancer Differentiating Agent Hexamethylene Bisacetamide Inhibits BET Bromodomain Proteins.

D. Logan, J. Nilsson, L. Nilsson, 2016, Cancer research.

Ser649 and Ser650 Are the Major Determinants of Protein Kinase A-Mediated Activation of Human Hormone-Sensitive Lipase against Lipid Substrates

M. Larsen, D. Logan, P. Osmark, 2008, PloS one.

The structure of EXTL3 helps to explain the different roles of bi-domain exostosins in heparan sulfate synthesis

D. Logan, P. Dupree, K. Mani, 2022, Nature Communications.

Crystallization, neutron data collection, initial structure refinement and analysis of a xyloglucan heptamer bound to an engineered carbohydrate-binding module from xylanase.

D. Logan, S. Z. Fisher, A. Ostermann, 2015, Acta crystallographica. Section F, Structural biology communications.

Discovery of three novel sesquiterpene synthases from Streptomyces chartreusis NRRL 3882 and crystal structure of an α-eudesmol synthase.

J. Bandow, D. Logan, R. Kourist, 2019, Journal of biotechnology.

Structural basis of activation and antagonism of receptor signaling mediated by interleukin-27

S. Savvides, C. Hunter, D. Logan, 2022, Cell reports.

Systematic Tuning of Fluoro-galectin-3 Interactions Provides Thiodigalactoside Derivatives with Single-Digit nM Affinity and High Selectivity.

M. Akke, D. Logan, M. Håkansson, 2018, Journal of medicinal chemistry.

Crystal structures of the Chromobacterium violaceumω‐transaminase reveal major structural rearrangements upon binding of coenzyme PLP

D. Logan, Per Berglund, B. Walse, 2012, The FEBS journal.

Crystal structure ofglycyl-tRNA synthetase from Thermusthermophilus

D. Moras, D. Logan, D. Kern, 1995 .

The Crystal Structure of Thermotoga maritima Class III Ribonucleotide Reductase Lacks a Radical Cysteine Pre-Positioned in the Active Site

B. Sjöberg, M. Sahlin, D. Logan, 2015, PloS one.

3-Substituted 1-Naphthamidomethyl-C-galactosyls Interact with Two Unique Sub-Sites for High-Affinity and High-Selectivity Inhibition of Galectin-3

D. Logan, M. Håkansson, U. Nilsson, 2019, Molecules.

Crystal structure of N-glycosylated human glypican-1 core protein: Structure of two loops evolutionarily conserved in vertebrate glypican-1

W. Awad, D. Logan, K. Mani, 2012 .

Structural and functional analyses of beta-glucosidase 3B from Thermotoga neapolitana: a thermostable three-domain representative of glycoside hydrolase 3.

E. Karlsson, D. Logan, Tania Pozzo, 2010, Journal of molecular biology.

Crystal structure of β‐glucosidase 1A from Thermotoga neapolitana and comparison of active site mutants for hydrolysis of flavonoid glucosides

D. Logan, Javier A. Linares-Pastén, T. Mahmood, 2017, Proteins.

Interplay between Conformational Entropy and Solvation Entropy in Protein-Ligand Binding.

Martin A. Olsson, M. Akke, U. Ryde, 2019, Journal of the American Chemical Society.

Crystal structure of reduced protein R2 of ribonucleotide reductase: the structural basis for oxygen activation at a dinuclear iron site.

J. Hajdu, K. Regnström, H. Eklund, 1996, Structure.

Structure and function of the radical enzyme ribonucleotide reductase.

U. Uhlin, H. Eklund, P. Nordlund, 2001, Progress in biophysics and molecular biology.

Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase

D. Logan, Per Berglund, B. Walse, 2019, Scientific Reports.

Refinement of protein structures using a combination of quantum-mechanical calculations with neutron and X-ray crystallographic data

U. Ryde, D. Logan, E. Oksanen, 2019, Acta crystallographica. Section D, Structural biology.

Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access

D. Logan, W. Lambert, M. Högbom, 2019, JBIC Journal of Biological Inorganic Chemistry.

Structural mechanism of allosteric substrate specificity regulation in a ribonucleotide reductase

P. Nordlund, D. Logan, P. Reichard, 2004, Nature Structural &Molecular Biology.

Kinetics of Transient Radicals in Escherichia coli Ribonucleotide Reductase

B. Sjöberg, M. Sahlin, D. Logan, 1997, The Journal of Biological Chemistry.

High‐resolution crystal structures of the flavoprotein NrdI in oxidized and reduced states – an unusual flavodoxin

B. Sjöberg, M. Sahlin, D. Logan, 2010, The FEBS journal.

Structural basis for interactions between tenascins and lectican C-type lectin domains: evidence for a crosslinking role for tenascins.

D. Logan, S. Al-Karadaghi, M. Mörgelin, 2004, Structure.

Modern mRNA Proofreading and Repair: Clues that the Last Universal Common Ancestor Possessed an RNA Genome?

D. Logan, A. Poole, 2005, Molecular biology and evolution.

Transaminase‐Catalyzed Racemization with Potential for Dynamic Kinetic Resolutions

D. Logan, Per Berglund, B. Walse, 2018, ChemCatChem.

DNA building blocks: keeping control of manufacture

B. Sjöberg, D. Logan, Mikael Crona, 2011, Critical reviews in biochemistry and molecular biology.

The Evolution of the Ribonucleotide Reductases: Much Ado About Oxygen

B. Sjöberg, D. Logan, A. Poole, 2002, Journal of Molecular Evolution.

A glycyl radical site in the crystal structure of a class III ribonucleotide reductase.

B. Sjöberg, P. Nordlund, D. Logan, 1999, Science.

FragMAX: the fragment-screening platform at the MAX IV Laboratory

Uwe Mueller, Wolfgang Knecht, Gustavo M A Lima, 2020, Acta crystallographica. Section D, Structural biology.

The Carbohydrate-Binding Site in Galectin-3 Is Preorganized To Recognize a Sugarlike Framework of Oxygens: Ultra-High-Resolution Structures and Water Dynamics

M. Akke, S. Genheden, U. Ryde, 2011, Biochemistry.

Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus of Bacteroides ovatus

Eric C. Martens, Evelina Kulcinskaja, D. Logan, 2016, The Journal of Biological Chemistry.

Functional features cause misfolding of the ALS-provoking enzyme SOD1

J. Danielsson, K. Saraboji, L. Leinartaitė, 2009, Proceedings of the National Academy of Sciences.

MM-131, a bispecific anti-Met/EpCAM mAb, inhibits HGF-dependent and HGF-independent Met signaling through concurrent binding to EpCAM

B. Schoeberl, U. Nielsen, A. Raue, 2019, Proceedings of the National Academy of Sciences.

Class Id ribonucleotide reductase utilizes a Mn2(IV,III) cofactor and undergoes large conformational changes on metal loading

Felix M. Ho, B. Sjöberg, D. Logan, 2019, JBIC Journal of Biological Inorganic Chemistry.

A surface-exposed GH26 β-mannanase from Bacteroides ovatus: Structure, role, and phylogenetic analysis of BoMan26B

D. Logan, H. Stålbrand, A. Bhattacharya, 2019, The Journal of Biological Chemistry.

A surface-exposed GH26 (cid:2) -mannanase from Bacteroides ovatus : Structure, role, and phylogenetic analysis of Bo Man26B

D. Logan, A. Bhattacharya, Viktoria Bågenholm, 2019 .

Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins

D. Logan, S. Al-Karadaghi, A. Aspberg, 2004 .

Current status and future opportunities for serial crystallography at MAX IV Laboratory

R. Shoeman, R. J. Friel, D. Logan, 2020, Journal of synchrotron radiation.

An Aspergillus nidulans β-mannanase with high transglycosylation capacity revealed through comparative studies within glycosidase family 5

D. Logan, H. Stålbrand, Sumitha K. Reddy, 2014, Applied Microbiology and Biotechnology.

An Aspergillus nidulans β-mannanase with high transglycosylation capacity revealed through comparative studies within glycosidase family 5

D. Logan, H. Stålbrand, John Sjöberg, 2014, Applied Microbiology and Biotechnology.

Phosphorylation of hormone‐sensitive lipase by protein kinase A in vitro promotes an increase in its hydrophobic surface area

D. Logan, M. Mörgelin, C. Holm, 2009, The FEBS journal.

Thermodynamics of protein destabilization in live cells

J. Danielsson, D. Logan, M. Oliveberg, 2015, Proceedings of the National Academy of Sciences.

Context matters: The importance of dimerization-induced conformation of the LukGH leukocidin of Staphylococcus aureus for the generation of neutralizing antibodies

L. Walker, D. Logan, Harald Rouha, 2016, mAbs.

Folding of S6 structures with divergent amino acid composition: pathway flexibility within partly overlapping foldons.

Sebastian Hansson, Derek T Logan, D. Logan, 2006, Journal of molecular biology.

Entropy–Entropy Compensation between the Protein, Ligand, and Solvent Degrees of Freedom Fine-Tunes Affinity in Ligand Binding to Galectin-3C

M. Akke, U. Ryde, D. Logan, 2021, JACS Au.

Implications of the Inability of Listeria monocytogenes EGD-e To Grow Anaerobically Due to a Deletion in the Class III NrdD Ribonucleotide Reductase for Its Use as a Model Laboratory Strain

D. Logan, J. Kreft, I. Borovok, 2011, Journal of bacteriology.

The coupling between disulphide status, metallation and dimer interface strength in Cu/Zn superoxide dismutase.

S. Marklund, D. Logan, M. Oliveberg, 2007, Journal of molecular biology.

Structural and kinetic features of crystal growth inhibition: adipic acid growing in the presence of n-alkanoic acids

R. Davey, S. Black, D. Logan, 1992 .

Folding catalysis by transient coordination of Zn2+ to the Cu ligands of the ALS-associated enzyme Cu/Zn superoxide dismutase 1.

K. Saraboji, L. Leinartaitė, D. Logan, 2010, Journal of the American Chemical Society.

Structure and Energetics of Ligand–Fluorine Interactions with Galectin‐3 Backbone and Side‐Chain Amides: Insight into Solvation Effects and Multipolar Interactions

Ulf Ryde, Ulf J. Nilsson, U. Ryde, 2019, ChemMedChem.

Substituted polyfluoroaryl interactions with an arginine side chain in galectin-3 are governed by steric-, desolvation and electronic conjugation effects.

U. Ryde, D. Logan, U. Nilsson, 2019, Organic & biomolecular chemistry.

Structural basis for adenosylcobalamin activation in AdoCbl-dependent ribonucleotide reductases.

P. Nordlund, D. Logan, K. Larsson, 2010, ACS chemical biology.

A metal-binding site in the catalytic subunit of anaerobic ribonucleotide reductase

B. Sjöberg, M. Fontecave, D. Logan, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Structural basis for allosteric substrate specificity regulation in anaerobic ribonucleotide reductases.

B. Sjöberg, P. Nordlund, D. Logan, 2001, Structure.

Solution Structure of the dATP-Inactivated Class I Ribonucleotide Reductase From Leeuwenhoekiella blandensis by SAXS and Cryo-Electron Microscopy

B. Sjöberg, D. Logan, I. Rozman Grinberg, 2021, Frontiers in Molecular Biosciences.

Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

B. Sjöberg, M. Sahlin, D. Logan, 2018, eLife.

Unique ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

B. Sjöberg, M. Sahlin, D. Logan, 2017, bioRxiv.

Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones.

B. Sjöberg, D. Logan, D. Lundin, 2016, Structure.

Closing the circle on ribonucleotide reductases

D. Logan, 2011, Nature Structural &Molecular Biology.

Crystal structures of two self-hydroxylating ribonucleotide reductase protein R2 mutants: structural basis for the oxygen-insertion step of hydroxylation reactions catalyzed by diiron proteins.

B. Sjöberg, P. Nordlund, D. Logan, 1998, Biochemistry.

Ribonucleotide reductase--structural studies of a radical enzyme.

M. Eriksson, U. Uhlin, H. Eklund, 1997, Biological chemistry.

Structural and Biophysical Characterization of Human EXTL3: Domain Organization, Glycosylation, and Solution Structure.

W. Awad, D. Logan, K. Mani, 2018, Biochemistry.

Exploring ligand dynamics in protein crystal structures with ensemble refinement

U. Ryde, D. Logan, E. Oksanen, 2021, Acta crystallographica. Section D, Structural biology.

Structure-Function Analysis of Heterodimer Formation, Oligomerization, and Receptor Binding of the Staphylococcus aureus Bi-component Toxin LukGH*

D. Logan, Harald Rouha, D. Hoffman, 2014, The Journal of Biological Chemistry.

GPC1 (glypican 1)

W. Awad, D. Logan, K. Mani, 2014 .

Improvements in the order, isotropy and electron density of glypican-1 crystals by controlled dehydration

W. Awad, D. Logan, K. Mani, 2013, Acta crystallographica. Section D, Biological crystallography.

Crystal Structure of N-Glycosylated Human Glypican-1 Core Protein

W. Awad, D. Logan, K. Mani, 2012, The Journal of Biological Chemistry.

Deoxyribonucleotide synthesis in anaerobic microorganisms: the class III ribonucleotide reductase.

M. Fontecave, D. Logan, E. Mulliez, 2002, Progress in nucleic acid research and molecular biology.

Hunting down hydrogen: applying neutron macromolecular crystallography to galectins

D. Logan, 2019, The Biochemist.

Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones.

B. Sjöberg, D. Logan, D. Lundin, 2016, Structure.

Heteromeric tandem IgG4/IgG1 Fc

B. Schoeberl, U. Nielsen, A. Raue, 2019 .

Crystal structure of EpCAM in complex with scFv

B. Schoeberl, U. Nielsen, A. Raue, 2019 .

Crystal structure of Sema domain of the Met receptor in complex with FAB

B. Schoeberl, U. Nielsen, A. Raue, 2019 .

Refinement of protein structures using a combination of quantum-mechanical calculations with neutron and X-ray crystallographic data. Corrigendum

U. Ryde, D. Logan, E. Oksanen, 2020, Acta crystallographica. Section D, Structural biology.

Exposing the distinctive modular behavior of β-strands and α-helices in folded proteins

J. Danielsson, D. Logan, M. Oliveberg, 2020, Proceedings of the National Academy of Sciences.

Tricking a Protein To Swap Strands.

J. Danielsson, D. Logan, M. Oliveberg, 2016, Journal of the American Chemical Society.

Neutron crystallographic studies reveal hydrogen bond and water-mediated interactions between a carbohydrate-binding module and its bound carbohydrate ligand.

D. Logan, S. Z. Fisher, M. Ohlin, 2015, Biochemistry.

Structural basis for carbohydrate-binding specificity--a comparative assessment of two engineered carbohydrate-binding modules.

D. Logan, M. Ohlin, B. Walse, 2012, Glycobiology.

NAD+ pool depletion as a signal for the Rex regulon involved in Streptococcus agalactiae virulence

D. Logan, Mikael C. Bauer, P. Glaser, 2021, PLoS pathogens.

Expression, purification, crystallization and preliminary X-ray diffraction analysis of Thermotoga neapolitana beta-glucosidase B.

Pernilla Turner, E. Karlsson, D. Logan, 2007, Acta crystallographica. Section F, Structural biology and crystallization communications.

Galectin-3C in complex with substituted fluoroaryltriazole monothiogalactoside derivative 1

U. Ryde, D. Logan, U. Nilsson, 2019 .

Status of the crystallography beamlines at the MAX IV Laboratory

D. Logan, J. Unge, J. Nan, 2015 .

BioMAX: The Future Macromolecular Crystallography Beamline at MAX IV

Peter Sondhauss, Ana Labrador, Keld Theodor, 2013 .

The New Macromolecular Crystallography Stations At MAX‐lab: The MAD Station

C. Svensson, J. Als-Nielsen, A. Liljas, 2004 .

A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch.

Ingemar André, Olof Stenström, Mikael Akke, 2016, Structure.

Trimming Down a Protein Structure to Its Bare Foldons

Ellinor Haglund, Derek T Logan, J. Danielsson, 2011, The Journal of Biological Chemistry.

Metallization of fluid hydrogen - Discussion

R. Johnston, C. Rao, D. Logan, 1998 .

5th CryoNET Symposium

D. Logan, Filippo Vascon, L. Cendron, 2022 .

Activity modulation in anaerobic ribonucleotide reductases: nucleotide binding to the ATP-cone mediates long-range order-disorder transitions in the active site

B. Sjöberg, D. Logan, D. Lundin, 2023, bioRxiv.

Crystal structure of glycyl‐tRNA synthetase from Thermus thermophilus.

D. Moras, D. Logan, D. Kern, 1995, The EMBO journal.

Structural Basis for YjbH Adaptor-Mediated Recognition of Transcription Factor Spx.

W. Awad, D. Logan, S. Ekström, 2019, Structure.

Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex

D. Logan, Mikael C. Bauer, S. Linse, 2008, Molecular microbiology.

A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch.

I. André, M. Akke, D. Logan, 2016, Structure.

Carbohydrate binding module recognition of xyloglucan defined by polar contacts with branching xyloses and CH‐Π interactions

D. Logan, M. Ohlin, L. Schantz, 2014, Proteins.