M. Smerdon

发表

Distribution of repair-incorporated nucleotides and nucleosome rearrangement in the chromatin of normal and xeroderma pigmentosum human fibroblasts.

M. Kastan, M. Smerdon, M. Lieberman, 1979, Biochemistry.

Assays for chromatin remodeling during nucleotide excision repair in Saccharomyces cerevisiae.

M. Smerdon, Ling Zhang, Feng Gong, 2009, Methods.

UV INDUCED (6‐4) PHOTOPRODUCTS ARE DISTRIBUTED DIFFERENTLY THAN CYCLOBUTANE DIMERS IN NUCLEOSOMES

J. M. Gale, M. Smerdon, 1990, Photochemistry and photobiology.

Unfolding of nucleosome cores dramatically changes the distribution of ultraviolet photoproducts in DNA.

M. Smerdon, D. W. Brown, L. Libertini, 1993, Biochemistry.

Modulation of DNA damage and DNA repair in chromatin.

M. Smerdon, A. Conconi, M J Smerdon, 1999, Progress in nucleic acid research and molecular biology.

Base Excision Repair of N-Methylpurines in a Yeast Minichromosome

M. Smerdon, Shisheng Li, S. Li, 1999, The Journal of Biological Chemistry.

Accessing DNA damage in chromatin: Insights from transcription

M. Smerdon, M. Meijer, M. Meijer, 1999, BioEssays : news and reviews in molecular, cellular and developmental biology.

The octadecanoid signalling pathway in plants mediates a response to ultraviolet radiation

G. Howe, M. Smerdon, C. Ryan, 1996, Nature.

Analyses of rRNA gene chromatin in cell cycle arrested Saccharomyces cerevisiae cells

M. Smerdon, J. Griesenbeck, A. Conconi, 2019, Data in brief.

Strand-specific modulation of UV photoproducts in 5S rDNA by TFIIIA binding and their effect on TFIIIA complex formation.

M. Smerdon, A. Conconi, X. Liu, 1997, Biochemistry.

Distribution within chromatin of deoxyribonucleic acid repair synthesis occurring at different times after ultraviolet radiation.

M. Smerdon, M. Lieberman, 1980, Biochemistry.

Photofootprint of nucleosome core DNA in intact chromatin having different structural states.

J. M. Gale, M. Smerdon, 1988, Journal of molecular biology.

Versatile cell-based assay for measuring DNA alkylation damage and its repair

Z. Lewis, M. Smerdon, Wioletta Czaja, 2021, Scientific Reports.

Versatile Cell-Based Assay for Measuring Base Excision Repair of DNA Alkylation Damage

Z. Lewis, M. Smerdon, Wioletta Czaja, 2021 .

High-resolution characterization of CPD hotspot formation in human fibroblasts

John J. Wyrick, Robert T. Morris, J. Wyrick, 2013, Nucleic acids research.

Repair of UV-induced) Photoproducts in Nucleosome Core DNA (*)

D. Mitchell, M. Smerdon, C. Suquet, 1995, The Journal of Biological Chemistry.

Sodium butyrate stimulates DNA repair in UV-irradiated normal and xeroderma pigmentosum human fibroblasts.

R. Reeves, M. Smerdon, R. Calza, 1982, The Journal of biological chemistry.

Tight correlation between inhibition of DNA repair in vitro and transcription factor IIIA binding in a 5S ribosomal RNA gene

M. Smerdon, E. Ackerman, A. Conconi, 1999, The EMBO journal.

Gene-specific nucleotide excision repair is impaired in human cells expressing elevated levels of high mobility group A1 nonhistone proteins.

R. Reeves, M. Smerdon, J. Adair, 2007, DNA repair.

Rad23 is required for transcription-coupled repair and efficient overrall repair in Saccharomyces cerevisiae

M. Smerdon, J. Mueller, 1996, Molecular and cellular biology.

Variations in Transcription-Repair Coupling in Mouse Cells (*)

M. Smerdon, D. Brown, A. Murad, 1995, The Journal of Biological Chemistry.

DNA Excision Repair at the Nucleosome Level of Chromatin

M. Smerdon, 1989 .

Excision repair of UV damage in human fibroblasts reversibly permeabilized by lysolecithin.

M. Smerdon, J. Watkins, J. D. Lorenz, 1988, Mutation research.

DNA repair within nucleosome cores of UV-irradiated human cells.

M. Smerdon, K. Jensen, 1990, Biochemistry.

DNA polymerase, RNA polymerase and exonuclease activities on a DNA sequence modified by benzo[a]pyrene diolepoxide.

B. Thrall, M. Smerdon, D. Springer, 1992, Carcinogenesis.

DNA damage can alter the stability of nucleosomes: effects are dependent on damage type.

M. Smerdon, D. Springer, D. Mann, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Analysis of DNA repair on nucleosome templates.

M. Smerdon, B. Beard, 2004, Methods in enzymology.

A slot blot method for detection of ultraviolet photoproducts in DNA.

M. Smerdon, X. Liu, 1995, Analytical Biochemistry.

Nucleosome structure modulates benzo[a]pyrenediol epoxide adduct formation.

B. Thrall, M. Smerdon, D. Springer, 1994, Biochemistry.

UV damage to DNA strongly influences its rotational setting on the histone surface of reconstituted nucleosomes.

M. Smerdon, C. Suquet, Christine Suquet, 1993, The Journal of biological chemistry.

Nucleosome rearrangement in human cells following short patch repair of DNA damaged by bleomycin.

M. Smerdon, K. Sidik, 1990, Biochemistry.

Improved method for measuring the ensemble average of strand breaks in genomic DNA

M. Smerdon, A. Conconi, Deirdre Fahy, 2001, Environmental and molecular mutagenesis.

Transcription, nucleosome stability, and DNA repair in a yeast minichromosome.

R. Gupta, M. Smerdon, F. Thoma, 1992, The Journal of biological chemistry.

Characterization of biotinylated repair regions in reversibly permeabilized human fibroblasts.

M. Smerdon, J. C. Huijzer, J. Huijzer, 1992, Biochemistry.

High-mobility group A1 proteins inhibit expression of nucleotide excision repair factor xeroderma pigmentosum group A.

R. Reeves, M. Smerdon, J. Adair, 2007, Cancer research.

Bleomycin-induced DNA damage and repair in human cells permeabilized with lysophosphatidylcholine.

M. Smerdon, K. Sidik, 1990, Cancer research.

Rapid changes in transcription and chromatin structure of ribosomal genes in yeast during growth phase transitions.

M. Smerdon, A. Conconi, Deirdre Fahy, 2005, Experimental cell research.

Changes in nuclear protein acetylation in u.v.-damaged human cells.

M. Smerdon, B. Ramanathan, 1986, Carcinogenesis.

Repair of plasmid and genomic DNA in a rad7Δ mutant of yeast

J. P. Mueller, M. Smerdon, James P. Mueller, 1995 .

Effect of histone H1 removal on the distribution of ultraviolet-induced deoxyribonucleic acid repair synthesis within chromatin.

M. Smerdon, M. Lieberman, J. Watkins, 1982, Biochemistry.

The Oxidative DNA Lesion 8,5′-(S)-Cyclo-2′-deoxyadenosine Is Repaired by the Nucleotide Excision Repair Pathway and Blocks Gene Expression in Mammalian Cells*

R. Tarone, M. Smerdon, P. J. Brooks, 2000, The Journal of Biological Chemistry.

Rpb4 and Rpb9 mediate subpathways of transcription‐coupled DNA repair in Saccharomyces cerevisiae

M. Smerdon, Shisheng Li, 2002, The EMBO journal.

Mitotic viability and metabolic competence in UV-irradiated yeast cells.

M. Smerdon, A. Conconi, X. Zhang, 2000, Mutation research.

Rearrangements of chromatin structure in newly repaired regions of deoxyribonucleic acid in human cells treated with sodium butyrate or hydroxyurea.

M. Smerdon, 1983, Biochemistry.

Distinct roles for RSC and SWI/SNF chromatin remodelers in genomic excision repair

John J. Wyrick, J. Wyrick, M. Smerdon, 2021, Genome research.

Asymmetric repair of UV damage in nucleosomes imposes a DNA strand polarity on somatic mutations in skin cancer

John J. Wyrick, J. Wyrick, M. Smerdon, 2019, Genome research.

Nucleosome positions establish an extended mutation signature in melanoma

John J. Wyrick, J. Wyrick, M. Smerdon, 2018, PLoS genetics.

Histone H3 Lysine 14 (H3K14) Acetylation Facilitates DNA Repair in a Positioned Nucleosome by Stabilizing the Binding of the Chromatin Remodeler RSC (Remodels Structure of Chromatin)*

M. Smerdon, M. Duan, 2014, The Journal of Biological Chemistry.

Structure of Chromatin ) the Chromatin Remodeler RSC ( Remodels Nucleosome by Stabilizing the Binding of Facilitates DNA Repair in a Positioned Histone H 3 Lysine 14 ( H 3 K 14 ) Acetylation DNA and Chromosomes

M. Smerdon, M. Duan, 2014 .

A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast

M. Smerdon, Feng Gong, Ronita Nag, 2012, Nucleic Acids Research.

Accommodation and repair of a UV photoproduct in DNA at different rotational settings on the nucleosome surface.

M. Smerdon, Ž. Svedružić, J. Kosmoski, 2005, The Journal of Biological Chemistry.

Altering the chromatin landscape for nucleotide excision repair.

M. Smerdon, Ronita Nag, 2009, Mutation research.

A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast

M. Smerdon, Feng Gong, Ronita Nag, 2008, Nucleic acids research.

Repair-Independent Chromatin Assembly onto Active Ribosomal Genes in Yeast after UV Irradiation

M. Smerdon, A. Conconi, M. Paquette, 2005, Molecular and Cellular Biology.

Inhibition of Nucleotide Excision Repair by High Mobility Group Protein HMGA1*

R. Reeves, M. Smerdon, Youngho Kwon, 2005, Journal of Biological Chemistry.

DNA repair in a protein-DNA complex: searching for the key to get in.

M. Smerdon, Youngho Kwon, 2005, Mutation research.

Nucleotide excision repair in chromatin and the right of entry.

M. Smerdon, Feng Gong, Youngho Kwon, 2005, DNA repair.

Dissecting Transcription-coupled and Global Genomic Repair in the Chromatin of Yeast GAL1-10 Genes*

M. Smerdon, Shisheng Li, 2004, Journal of Biological Chemistry.

Low- and high-resolution mapping of DNA damage at specific sites.

R. Waters, M. Smerdon, S. Li, 2000, Methods.

Nucleotide Excision Repair of the 5 S Ribosomal RNA Gene Assembled into a Nucleosome*

M. Smerdon, Xiaoqi Liu, 2000, The Journal of Biological Chemistry.

Nucleotide excision repair in a constitutive and inducible gene of a yeast minichromosome in intact cells.

M. Smerdon, F. Thoma, S. Li, 1999, Nucleic acids research.

DNA repair and the role of chromatin structure.

M. Smerdon, M J Smerdon, 1991, Current opinion in cell biology.

Site-specific DNA repair at the nucleosome level in a yeast minichromosome

M. Smerdon, F. Thoma, 1990, Cell.

UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases.

J M Gale, J. M. Gale, M. Smerdon, 1987, Proceedings of the National Academy of Sciences of the United States of America.

Nucleosome rearrangement in human chromatin during UV-induced DNA- reapir synthesis.

M. Smerdon, M. Lieberman, 1978, Proceedings of the National Academy of Sciences of the United States of America.

Distribution of ultraviolet-induced DNA repair synthesis in nuclease sensitive and resistant regions of human chromatin.

T. Tlsty, M. Smerdon, M. Lieberman, 1978, Biochemistry.

Strand Breaks Are Repaired Efficiently in Human Ribosomal Genes*

M. Smerdon, C. Suquet, Lucie K. Fritz, 1996, The Journal of Biological Chemistry.

Transcription-coupled repair in RNA polymerase I-transcribed genes of yeast

M. Smerdon, A. Conconi, V. A. Bespalov, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Chromatin remodelling complex RSC promotes base excision repair in chromatin of Saccharomyces cerevisiae.

M. Smerdon, Wioletta Czaja, Peng Mao, 2014, DNA repair.

Nucleosome Structure and Repair of N-Methylpurines in the GAL1-10 Genes of Saccharomyces cerevisiae*

M. Smerdon, Shisheng Li, 2002, The Journal of Biological Chemistry.

Nucleosomes Regulate Base Excision Repair in Chromatin.

John J. Wyrick, J. Wyrick, M. Smerdon, 2017, Mutation research.

Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity

John J. Wyrick, J. Wyrick, P. Mieczkowski, 2017, Genome research.

Modulation of Rad26- and Rpb9-mediated DNA Repair by Different Promoter Elements*

M. Smerdon, Shisheng Li, Baojin Ding, 2006, Journal of Biological Chemistry.

Role of the mammalian SWI/SNF chromatin remodeling complex in the cellular response to UV damage

Weidong Wang, M. Smerdon, Feng Gong, 2008, Cell cycle.

The amino-terminal tails of histones H2A and H3 coordinate efficient base excision repair, DNA damage signaling and postreplication repair in Saccharomyces cerevisiae

John J. Wyrick, J. Wyrick, M. Smerdon, 2015, Nucleic acids research.

Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes

Samuel H. Wilson, M. Smerdon, B. Beard, 2003, Proceedings of the National Academy of Sciences of the United States of America.

ETS transcription factors induce a unique UV damage signature that drives recurrent mutagenesis in melanoma

Steven A Roberts, Svetlana Lockwood, John J. Wyrick, 2018, Nature Communications.

Nucleosome Unfolding during DNA Repair in Normal and Xeroderma Pigmentosum (Group C) Human Cells*

M. Smerdon, B. Baxter, 1998, The Journal of Biological Chemistry.

DNA repair of a single UV photoproduct in a designed nucleosome

M. Smerdon, E. Ackerman, J. Kosmoski, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Cross-linking of myosin subfragment 1 and heavy meromyosin by use of vanadate and a bis(adenosine 5'-triphosphate) analogue.

M. Smerdon, K. Munson, R. Yount, 1986, Biochemistry.

Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme

M. Smerdon, J. M. Hinz, Y. Rodriguez, 2010, Proceedings of the National Academy of Sciences.

Rescue of DNA damage-stalled RNA Pol II: histone H2B in action.

M. Smerdon, Peng Mao, 2014, RNA & disease.

Proficient repair in chromatin remodeling defective ino80 mutants of Saccharomyces cerevisiae highlights replication defects as the main contributor to DNA damage sensitivity.

M. Smerdon, Wioletta Czaja, J. M. Hinz, 2010, DNA repair.

Enhanced DNA repair synthesis in hyperacetylated nucleosomes.

M. Smerdon, M J Smerdon, B Ramanathan, 1989, The Journal of biological chemistry.

In yeast cells arrested at the early S-phase by hydroxyurea, rRNA gene promoters and chromatin are poised for transcription while rRNA synthesis is compromised.

M. Smerdon, J. Griesenbeck, A. Conconi, 2019, Mutation research.

Binding of Zinc Finger Protein Transcription Factor IIIA to Its Cognate DNA Sequence with Single UV Photoproducts at Specific Sites and Its Effect on DNA Repair*

M. Smerdon, Youngho Kwon, 2003, Journal of Biological Chemistry.

Repair of UV damage in actively transcribed ribosomal genes.

M. Smerdon, L. Fritz, 1995, Biochemistry.

DNA repair in a small yeast plasmid folded into chromatin.

M. Smerdon, F. Thoma, J. Bedoyan, 1990, Nucleic acids research.

A nonuniform distribution of excision repair synthesis in nucleosome core DNA.

M. Smerdon, S. Lan, 1985, Biochemistry.

Base Excision Repair in a Glucocorticoid Response Element

M. Smerdon, Yan Wang, A. K. Hinz, 2010, The Journal of Biological Chemistry.

Modulations in Chromatin Structure During DNA Damage Formation and DNA Repair

M. Smerdon, F. Thoma, 1998 .

Limited nucleosome migration can completely randomize DNA repair patches in intact human cells.

A. Dunker, G. Arnold, M. Smerdon, 1987, Journal of molecular biology.

The Emerging Roles of ATP-Dependent Chromatin Remodeling Enzymes in Nucleotide Excision Repair

M. Smerdon, Wioletta Czaja, Peng Mao, 2012, International journal of molecular sciences.

UV Damage in DNA Promotes Nucleosome Unwrapping*

M. Smerdon, M. Duan, 2010, The Journal of Biological Chemistry.

Rad4–Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair

M. Smerdon, Feng Gong, Deirdre Fahy, 2006, Nature Structural &Molecular Biology.

UV‐Induced DNA Damage and Mutagenesis in Chromatin

John J. Wyrick, J. Wyrick, M. Smerdon, 2017, Photochemistry and photobiology.

The roles of Rad16 and Rad26 in repairing repressed and actively transcribed genes in yeast.

M. Smerdon, Shisheng Li, Baojin Ding, 2007, DNA repair.

Site-specific Acetylation of Histone H3 Decreases Polymerase β Activity on Nucleosome Core Particles in Vitro*

John J. Wyrick, J. Wyrick, M. Smerdon, 2016, The Journal of Biological Chemistry.

Accessing DNA damage in chromatin: Preparing the chromatin landscape for base excision repair.

M. Smerdon, J. M. Hinz, Y. Rodriguez, 2015, DNA repair.

UV damage-induced RNA polymerase II stalling stimulates H2B deubiquitylation

M. Smerdon, Peng Mao, Rithy Meas, 2014, Proceedings of the National Academy of Sciences.

Nucleosome rearrangement in vitro. 1. Two phases of salt-induced nucleosome migration in nuclei.

M. Smerdon, J. Watkins, 1985, Biochemistry.

Conformational changes in subfractions of calf thymus histone H1.

M. Smerdon, I. Isenberg, 1976, Biochemistry.

Conformational changes in histone GRK(f2a-1).

M. Smerdon, I. Isenberg, 1974, Biochemistry.

Interactions between the subfractons of calf thymus H1 and nonhistone chromosomal proteins HMG1 and HMG2.

M. Smerdon, I. Isenberg, 1976, Biochemistry.

A cassette of basic amino acids in histone H2B regulates nucleosome dynamics and access to DNA damage

John J. Wyrick, J. Wyrick, M. Smerdon, 2018, The Journal of Biological Chemistry.

A cassette of N-terminal amino acids of histone H2B are required for efficient cell survival, DNA repair and Swi/Snf binding in UV irradiated yeast

J. Wyrick, M. Smerdon, Ronita Nag, 2009, Nucleic acids research.

Different structural states in oligonucleosomes are required for early versus late steps of base excision repair

Samuel H. Wilson, M. Smerdon, R. Prasad, 2007, Nucleic acids research.

DISTRIBUTION OF UV-INDUCED DNA REPAIR SYNTHESIS IN HUMAN CHROMATIN

M. Smerdon, M. Lieberman, 1978 .

Histone H3 Lys79 methylation is required for efficient nucleotide excision repair in a silenced locus of Saccharomyces cerevisiae

John J. Wyrick, J. Wyrick, M. Smerdon, 2009, Nucleic acids research.

Nucleosome rearrangement in vitro. 2. Formation of nucleosomes in newly repaired regions of DNA.

M. Smerdon, J. Watkins, 1985, Biochemistry.

UV-induced pyrimidine dimers and trimethylpsoralen cross-links do not alter chromatin folding in vitro.

J. M. Gale, M. Smerdon, 1988, Biochemistry.

Stability of nucleosome placement in newly repaired regions of DNA.

M. Smerdon, S. Lan, K. A. Nissen, 1986, The Journal of biological chemistry.

Completion of excision repair in human cells. Relationship between ligation and nucleosome formation.

M. Smerdon, 1986, The Journal of biological chemistry.

Nucleosomes determine their own patch size in base excision repair

M. Smerdon, Rithy Meas, 2016, Scientific Reports.

Correlation between repair patch ligation and nucleosome rearrangement in human cells treated with bleomycin, UV radiation or methyl methanesulfonate.

M. Smerdon, K. Sidik, 1992, Carcinogenesis.

The Structural Location of DNA Lesions in Nucleosome Core Particles Determines Accessibility by Base Excision Repair Enzymes*

M. Smerdon, Y. Rodriguez, 2013, The Journal of Biological Chemistry.

Base excision repair in nucleosomes lacking histone tails.

Samuel H. Wilson, M. Smerdon, B. Beard, 2005, DNA repair.

Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution

John J. Wyrick, J. Wyrick, M. Smerdon, 2016, Proceedings of the National Academy of Sciences.

Accommodation and Repair of a UV Photoproduct in DNA at Different Rotational Settings on the Nucleosome Surface*

M. Smerdon, Ž. Svedružić, J. Kosmoski, 2005, Journal of Biological Chemistry.

Ultraviolet damage and nucleosome folding of the 5S ribosomal RNA gene.

M. Smerdon, D. Springer, D. Mann, 2000, Biochemistry.

Yeast Deubiquitinase Ubp3 Interacts with the 26 S Proteasome to Facilitate Rad4 Degradation*

M. Smerdon, Peng Mao, 2010, The Journal of Biological Chemistry.

The effect of temperature on histone GRK aggregation.

M. Smerdon, I. Isenberg, 1973, Biochemical and biophysical research communications.

Synthesis and nucleosome structure of DNA containing a UV photoproduct at a specific site.

M. Smerdon, J. Kosmoski, 1999, Biochemistry.

Polycistronic coexpression and nondenaturing purification of histone octamers.

M. Smerdon, M. Duan, Xuejing Chen, 2012, Analytical biochemistry.

A half century of exploring DNA excision repair in chromatin

John J. Wyrick, J. Wyrick, M. Smerdon, 2023, The Journal of biological chemistry.

The detection of proteins in unstained gels by the use of phosphorescence.

H. W. Schaup, M. Smerdon, I. Isenberg, 1975, Analytical biochemistry.