J. Adelman

发表

Efficient Atomistic Simulation of Pathways and Calculation of Rate Constants for a Protein-Peptide Binding Process: Application to the MDM2 Protein and an Intrinsically Disordered p53 Peptide.

L. Chong, D. Zuckerman, M. Zwier, 2016, The journal of physical chemistry letters.

Simulating Current-Voltage Relationships for a Narrow Ion Channel Using the Weighted Ensemble Method.

J. Adelman, M. Grabe, 2015, Journal of chemical theory and computation.

The mechanical properties of PCNA: implications for the loading and function of a DNA sliding clamp.

Joshua L Adelman, Thomas F. Miller, Daniel Barsky, 2010, Biophysical journal.

Stochastic steps in secondary active sugar transport

D. Loo, E. Wright, J. Rosenberg, 2016, Proceedings of the National Academy of Sciences.

msmbuilder: MSMBuilder 3.4

Robert T. McGibbon, Matthew P. Harrigan, Brooke E. Husic, 2016 .

Expression of three topologically distinct membrane proteins elicits unique stress response pathways in the yeast Saccharomyces cerevisiae.

James Lyons-Weiler, J. Adelman, J. Brodsky, 2015, Physiological genomics.

Cloning and functional expression in yeast of two human isoforms of the outer mitochondrial membrane channel, the voltage-dependent anion channel.

J. Adelman, E. McCabe, J. Adelman, 1993, The Journal of biological chemistry.

Software Carpentry: Programming with Python

Leigh Sheneman, Jessica B. Hamrick, Konrad Hinsen, 2015 .

A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v0.1]

David N. LeBard, Anthony T. Bogetti, John D. Russo, 2022, bioRxiv.

Simulations of the alternating access mechanism of the sodium symporter Mhp1.

Divesh Bhatt, Joshua L Adelman, Michael Grabe, 2011, Biophysical journal.

Mechanochemistry of transcription termination factor Rho.

G. Oster, J. Liao, Dong-Eun Kim, 2006, Molecular cell.

Constraint-based, Homology Model of the Extracellular Domain of the Epithelial Na+ Channel α Subunit Reveals a Mechanism of Channel Activation by Proteases*

J. Adelman, M. Grabe, B. Blobner, 2010, The Journal of Biological Chemistry.

Structure-guided simulations illuminate the mechanism of ATP transport through VDAC1

Joshua L Adelman, Michael Grabe, Aviv Paz, 2014, Nature Structural &Molecular Biology.

A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0].

Daniel M. Zuckerman, Alex Dickson, Alex J. DeGrave, 2019, Living journal of computational molecular science.

WESTPA: an interoperable, highly scalable software package for weighted ensemble simulation and analysis.

Joshua L Adelman, Michael Grabe, Daniel M Zuckerman, 2015, Journal of chemical theory and computation.

Simulating rare events using a weighted ensemble-based string method.

Joshua L Adelman, Michael Grabe, J. Adelman, 2012, The Journal of chemical physics.

WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications

David N. LeBard, Kim F. Wong, Anthony T. Bogetti, 2021, bioRxiv.

Accurate Estimation of Protein Folding and Unfolding Times: Beyond Markov State Models

Daniel M. Zuckerman, Ernesto Suárez, Joshua L. Adelman, 2016, Journal of chemical theory and computation.

Intracellular Pattern Formation : A Spatial Stochastic Model of Bacterial division site selection proteins MinCDE

Steven S. Andrews, Joshua L. Adelman, S. Andrews, 2004 .

WESTPA: an interoperable, highly scalable software package for weighted ensemble simulation and analysis.

Kim F. Wong, Nicholas B Rego, L. Chong, 2015, Journal of chemical theory and computation.