V. Sklenar

发表

Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending.

J. Feigon, N. Hud, V. Sklenar, 1999, Journal of molecular biology.

Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.

J. Vymětal, J. Vondrášek, J. Černý, 2014, Protein engineering, design & selection : PEDS.

iNEXT: a European facility network to stimulate translational structural biology

J. Ellenberg, H. Schwalbe, D. Stuart, 2018, FEBS letters.

X-ray vs. NMR structure of N-terminal domain of δ-subunit of RNA polymerase.

J. Komárek, V. Sklenar, L. Žídek, 2014, Journal of structural biology.

Gradient-Tailored Water Suppression for 1H-15N HSQC Experiments Optimized to Retain Full Sensitivity

Vladimir Sklenar, V. Saudek, V. Sklenar, 1993 .

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic 15N chemical shielding anisotropy tensors

J. Koča, R. Boelens, V. Sklenar, 2013, Journal of biomolecular NMR.

Gradient-enhanced HSQC experiments for phase-sensitive detection of multiple bond interactions

V. Sklenar, R. Marek, L. Kralik, 1997 .

Measurement of carbon-13 longitudinal relaxation using 1H detection

A. Bax, D. Torchia, V. Sklenar, 1987 .

Pulse methods for calibration of the decoupler radiofrequency field strength in NMR spectroscopy

V. Sklenar, Z. Starcuk, Kamil Nejezchleb, 1986 .

Exploring non-covalent interactions in guanine- and xanthine-based model DNA quadruplex structures: a comprehensive quantum chemical approach.

V. Sklenar, J. Novotný, R. Marek, 2014, Physical chemistry chemical physics : PCCP.

NMR Studies of Purines

V. Sklenar, R. Marek, 2005 .

Exploring the Structure of a DNA Hairpin with the Help of NMR Spin−Spin Coupling Constants: An Experimental and Quantum Chemical Investigation

D. Cremer, V. Sklenar, L. Žídek, 2002 .

Selective excitation techniques for water suppression in one- and two-dimensional NMR spectroscopy.

V. Sklenar, 1990, Basic life sciences.

1-2-1 Pulse train: A new effective method of selective excitation for proton NMR in water

V. Sklenar, Z. Starcuk, Z. Starčuk, 1982 .

The Eighth Central European Conference “Chemistry towards Biology”: Snapshot

J. Koča, S. Geidl, V. Horský, 2016, Molecules.

Structural Study of the Partially Disordered Full‐Length δ Subunit of RNA Polymerase from Bacillus subtilis

V. Sklenar, L. Žídek, H. Šanderová, 2013, Chembiochem : a European journal of chemical biology.

Direct determination of tautomerism in purine derivatives by low-temperature NMR spectroscopy

Michal Hocek, V. Sklenar, E. Kolehmainen, 2004 .

Aliphatic substituents in place of thymine methyl promote zig-zag character of the poly(dA-dT)·poly(dA-dT) backbone

V. Sklenar, J. Kypr, M. Vorlíčková, 1987 .

Direct identification of relayed nuclear overhauser effects

A. Bax, M. Summers, V. Sklenar, 1986 .

Simplification of DNA proton nuclear magnetic resonance spectra by homonuclear Hartmann-Hahn edited two-dimensional nuclear overhauser enhancement spectroscopy

J. Feigon, V. Sklenar, 1990 .

Water suppression using a combination of hard and soft pulses

A. Bax, V. Sklenar, R. Tschudin, 1987 .

Experiments for correlating quaternary carbons in RNA bases

V. Sklenar, R. Fiala, M. Munzarová, 2004, Journal of biomolecular NMR.

Measurement of small scalar and dipolar couplings in purine and pyrimidine bases*

J. Feigon, V. Sklenar, Haihong Wu, 2001, Journal of biomolecular NMR.

Refinement of d(GCGAAGC) hairpin structure using one- and two-bond residual dipolar couplings

R. Stefl, V. Sklenar, L. Žídek, 2002, Journal of biomolecular NMR.

Temperature-dependent spectral density analysis applied to monitoring backbone dynamics of major urinary protein-I complexed with the pheromone 2-sec-butyl-4,5-dihydrothiazole*

M. Novotny, V. Sklenar, L. Žídek, 2004, Journal of biomolecular NMR.

N.m.r. and c.d. studies of the DNA fragments d(TATATATA) and d(TATATA) in solution.

A. Bax, G. Zon, V. Sklenar, 1989, International journal of biological macromolecules.

Molecular dynamics study of major urinary protein–pheromone interactions: A structural model for ligand‐induced flexibility increase

V. Sklenar, L. Žídek, P. Novák, 2006, FEBS letters.

Carbon‐13 NMR spectra of adamantane carboxylic acids and diamantane mono‐ and di‐carboxylic acids and esters

V. Sklenar, M. Hájek, L. Vodic̆ka, 1985 .

Salt-induced conformational transition of poly[d(A-T)] X poly[d(A-T)].

V. Sklenar, J. Kypr, M. Vorlíčková, 1983, Journal of molecular biology.

1H and 13C NMR study of quaternary benzo[c]phenanthridine alkaloids 1

V. Sklenar, R. Dommisse, J. Dostál, 1999 .

15N NMR study of isoquinoline alkaloids

V. Sklenar, J. Dostál, R. Marek, 1999 .

Backbone motions of free and pheromone-bound major urinary protein I studied by molecular dynamics simulation.

V. Sklenar, L. Žídek, P. Novák, 2007, The journal of physical chemistry. B.

Solution structure of the N‐terminal domain of Bacillus subtilis δ subunit of RNA polymerase and its classification based on structural homologs

V. Sklenar, L. Žídek, H. Šanderová, 2010, Proteins.

Triple resonance 15N NMR relaxation experiments for studies of intrinsically disordered proteins

V. Sklenar, L. Žídek, L. Krásný, 2017, Journal of Biomolecular NMR.

NMR relaxation and the structure of a synthetic DNA poly(dA-dT).poly(dA-dT).

V. Sklenar, J. Kypr, M. Vorlíčková, 1986, General physiology and biophysics.

Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice

D. Kavan, L. Vannucci, J. Hudeček, 2008, The FEBS journal.

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c

V. Sklenar, L. Žídek, Radka Dopitová, 2013, Journal of Biomolecular NMR.

4D Non-uniformly sampled HCBCACON and 1J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins

V. Sklenar, L. Žídek, J. Nováček, 2012, Journal of Biomolecular NMR.

Binding sites and dynamics of ammonium ions in a telomere repeat DNA quadruplex.

J. Feigon, N. Hud, V. Sklenar, 1999, Journal of molecular biology.

Mixed aromatic-aliphatic acetals; Their preparation, 1 H and 13 C-NMR spectra and hydrogenolysis by ethereal solution of chloroalane

V. Sklenar, J. Dušek, J. Jonas, 1981 .

Analysis of heavy crude oil residues by carbon-13 Fourier transform nuclear magnetic resonance spectrometry

V. Sklenar, M. Hájek, G. Šebor, 1978 .

Cooperation between subunits is essential for high-affinity binding of N-acetyl-D-hexosamines to dimeric soluble and dimeric cellular forms of human CD69.

D. Kavan, V. Křen, V. Sklenar, 2010, Biochemistry.

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

D. Kavan, V. Křen, V. Sklenar, 2010, Journal of medicinal chemistry.

Origin of the conformational modulation of the 13C NMR chemical shift of methoxy groups in aromatic natural compounds.

M. Straka, V. Sklenar, R. Marek, 2013, The journal of physical chemistry. A.

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

V. Saudek, V. Sklenar, M. Piotto, 1992, Journal of biomolecular NMR.

Spectral density mapping at multiple magnetic fields suitable for (13)C NMR relaxation studies.

V. Sklenar, L. Žídek, G. Widmalm, 2016, Journal of magnetic resonance.

Assignment of the 31P and 1H resonances in oligonucleotides by two‐dimensional NMR spectroscopy

A. Bax, G. Zon, V. Sklenar, 1986, FEBS letters.

Dracophane, a metacyclophane derivative from the resin of Dracaena cinnabari Balf.

V. Sklenar, R. Marek, K. Ubik, 2002, Phytochemistry.

Measurement of long-range 1H-19F scalar coupling constants and their glycosidic torsion dependence in 5-fluoropyrimidine-substituted RNA.

L. Scott, M. Hennig, J. Williamson, 2006, Journal of the American Chemical Society.

Toward Reproducing Sequence Trends in Phosphorus Chemical Shifts for Nucleic Acids by MD/DFT Calculations.

V. Sklenar, M. Dračínský, J. Novotný, 2013, Journal of chemical theory and computation.

Phosphorus chemical shifts in a nucleic acid backbone from combined molecular dynamics and density functional calculations.

V. Sklenar, M. Kaupp, P. Novák, 2010, Journal of the American Chemical Society.

DNA A-tract bending in three dimensions: solving the dA4T4 vs. dT4A4 conundrum.

J. Feigon, R. Stefl, S. Ravindranathan, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Palmatine and berberine isolation artifacts.

V. Sklenar, J. Marek, J. Dostál, 2003, Journal of natural products.

Sanguinarine pseudobase: re‐examination of NMR assignments using gradient‐enhanced spectroscopy

V. Sklenar, J. Dostál, R. Marek, 1998 .

Optimization of triple-resonance HCN experiments for application to larger RNA oligonucleotides.

J. Feigon, S. Butcher, V. Sklenar, 1998, Journal of magnetic resonance.

1H NMR spectroscopy of DNA.

J. Feigon, V. Sklenar, R. Macaya, 1992, Methods in enzymology.

Program MULDER – A tool for extracting torsion angles from NMR data

Petr Padrta, Vladimír Sklenář, V. Sklenar, 2002, Journal of biomolecular NMR.

Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids

V. Sklenar, R. Fiala, J. Czernek, 2000, Journal of biomolecular NMR.

Sensitivity optimized HCN and HCNCH experiments for 13C/15N labeled oligonucleotides

V. Sklenar, R. Fiala, F. Jiang, 1998 .

Determination of the glycosidic torsion angles in uniformly 13C-labeled nucleic acids from vicinal coupling constants 3JC2/4−H1′ and 3JC6/8−H1′

J. Feigon, R. Stefl, V. Sklenar, 2002, Journal of biomolecular NMR.

Synthesis of methyl 6″-deoxy-6′-fluoro-α-isomaltoside and of the corresponding trisaccharide

V. Sklenar, P. Kováč, C. Glaudemans, 1988 .

Formation of a stable triplex from a single DNA strand.

J. Feigon, V. Sklenar, Juli Feigon, 1990 .

Proton nuclear magnetic resonance assignments and structural characterization of an intramolecular DNA triplex.

J. Feigon, V. Sklenar, R. Macaya, 1992, Journal of molecular biology.

13C-detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases

Vladimír Sklenář, Radovan Fiala, V. Sklenar, 2007, Journal of biomolecular NMR.

HCCCH experiment for through-bond correlation of thymine resonances in 13C-labeled DNA oligonucleotides.

J. Feigon, V. Sklenar, J. Masse, 1999, Journal of magnetic resonance.

NMR methodology for the study of nucleic acids.

R. Stefl, V. Sklenar, L. Žídek, 2001, Current opinion in structural biology.

Two-dimensional triple-resonance HCNCH experiment for direct correlation of ribose H1' and base H8, H6 protons in 13C,15N-labeled RNA oligonucleotides

J. Feigon, V. Sklenar, R. Peterson, 1993 .

Spin-echo water suppression for the generation of pure-phase two-dimensional NMR spectra

A. Bax, V. Sklenar, 1987 .

Two-and three-dimensional HCN experiments for correlating base and sugar resonances in 15N, 13C-labeled RNA oligonucleotides

J. Feigon, V. Sklenar, R. Peterson, 1993, Journal of biomolecular NMR.

Reaction Mechanism and Stereochemistry of γ-Hexachlorocyclohexane Dehydrochlorinase LinA*

A. Murzin, J. Damborský, V. Sklenar, 2001, The Journal of Biological Chemistry.

NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus.

I. Pichová, T. Ruml, V. Sklenar, 2009, Journal of molecular biology.

1H, 13C, and 15N resonance assignment of the N-terminal domain of Mason-Pfizer monkey virus capsid protein, CA 1-140

I. Pichová, V. Sklenar, L. Žídek, 2008, Biomolecular NMR assignments.

Loss of loop adenines alters human telomere d[AG3(TTAG3)3] quadruplex folding

V. Sklenar, R. Marek, R. Fiala, 2014, Nucleic acids research.

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin–spin interactions

R. Boelens, V. Sklenar, R. Fiala, 2015, Journal of biomolecular NMR.

Conformational Dynamics and Antigenicity in the Disordered Malaria Antigen Merozoite Surface Protein 2

R. Norton, R. Anders, V. Sklenar, 2015, PloS one.

Neonatal Escherichia coli infections in calves. I. Appraisal of rehydration.

J. Vanecek, V. Sklenar, K. Raška, 2010, Zentralblatt fur Veterinarmedizin. Reihe B. Journal of veterinary medicine. Series B.

Analysis of coal asphaltenes by Carbon-13 Fourier Transform Nuclear Magnetic Resonance spectrometry

V. Sklenar, Z. Starcuk, M. Suchanek, 1980 .

Composite pulse sequences with variable performance

V. Sklenar, Z. Starcuk, 1985 .

Spectral density mapping protocols for analysis of molecular motions in disordered proteins

V. Sklenar, L. Žídek, L. Krásný, 2014, Journal of biomolecular NMR.

The δ Subunit of RNA Polymerase Is Required for Rapid Changes in Gene Expression and Competitive Fitness of the Cell

V. Sklenar, L. Žídek, H. Šanderová, 2013, Journal of bacteriology.

Triple resonance 15N NMR relaxation experiments for studies of intrinsically disordered proteins

V. Sklenar, L. Žídek, L. Krásný, 2017, Journal of biomolecular NMR.

Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments

Krzysztof Kazimierczuk, Lukáš Žídek, Vladimír Sklenář, 2010, Journal of biomolecular NMR.

An A-type double helix of DNA having B-type puckering of the deoxyribose rings.

R. Stefl, J. Koča, V. Sklenar, 2000, Journal of molecular biology.

Toward optimal-resolution NMR of intrinsically disordered proteins.

V. Sklenar, L. Žídek, J. Nováček, 2014, Journal of magnetic resonance.

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c

V. Sklenar, L. Žídek, Radka Dopitová, 2013, Journal of biomolecular NMR.

Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana.

V. Sklenar, L. Žídek, J. Horák, 2011, The Plant journal : for cell and molecular biology.

The Structural Properties in Solution of the Intrinsically Mixed Folded Protein Ataxin-3.

A. Pastore, V. Sklenar, J. Nováček, 2018, Biophysical journal.

A strategy to study intrinsically mixed folded proteins: The structure in solution of ataxin-3

A. Pastore, V. Sklenar, J. Nováček, 2018, bioRxiv.

Mapping the active site of factor Xa by selective inhibitors: An NMR and MD study

F. Fraternali, V. Saudek, P. Šafář, 1998, Proteins.

4D Non-uniformly sampled HCBCACON and 1J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins

V. Sklenar, L. Žídek, J. Nováček, 2012, Journal of biomolecular NMR.

Structure of Bombyx mori chemosensory protein 1 in solution.

C. Löfstedt, V. Sklenar, L. Žídek, 2007, Archives of insect biochemistry and physiology.

BULLETIN OF MAGNETIC RESONANCE The Quarterly Review Journal of the International Society of Magnetic Resonance

P. Callaghan, C. S. Yannoni, R. Kaptein, 2007 .

Measurement of proton phosphorus 31 nmr coupling constants in double stranded dna fragments

A. Bax, V. Sklenar, 1987 .

Structure and transformations of the alkaloid sanguilutine

V. Sklenar, E. Hoffmann, B. Tinant, 1998 .

Conformational Study of C2 Symmetrical Benzo[c]phenanthridine Alkaloid Derivatives

V. Sklenar, J. Dostál, R. Marek, 1997 .

Through-bond correlation of imino and aromatic resonances in 13C-,15N-labeled RNA via heteronuclear TOCSY

J. Feigon, S. Butcher, V. Sklenar, 1996, Journal of biomolecular NMR.

Correlation of nucleotide base and sugar protons in a 15N-labeled HIV-1 RNA oligonucleotide by 1H-15N HSQC experiments

J. Feigon, V. Sklenar, R. Peterson, 1994, Journal of biomolecular NMR.

Backbone 1H, 13C, and 15N NMR assignment for the inactive form of the retroviral protease of the murine intracisternal A-type particle, inMIA-14 PR

V. Sklenar, L. Žídek, M. Kožíšek, 2009, Biomolecular NMR assignments.

A new water suppression technique for generating pure-phase spectra with equal excitation over a wide bandwidth

A. Bax, V. Sklenar, 1987 .

Water suppression in two-dimensional spin-locked nuclear magnetic resonance experiments using a novel phase-cycling procedure

A. Bax, G. Clore, V. Sklenar, 1987 .

New hard pulse sequences for solvent signal suppression in fourier transform NMR. II

V. Sklenar, Z. Starcuk, Z. Starčuk, 1986 .

New hard pulse sequences for the solvent signal suppression in Fourier-transform NMR. I

V. Sklenar, Z. Starcuk, Z. Starčuk, 1985 .

Concept Lattices Constrained by Equivalence Relations

Radim Belohlávek, Vladimir Sklenar, Jiri Zacpal, 2004, CLA.

Crisply Generated Fuzzy Concepts

Radim Belohlávek, Vladimir Sklenar, Jiri Zacpal, 2005, ICFCA.

7Li nuclear-magnetic-resonance study of lithium binding to myo-inositolmonophosphatase.

V. Saudek, V. Sklenar, R. Atkinson, 1996, European journal of biochemistry.

Dissection of binding between a phosphorylated tyrosine hydroxylase peptide and 14-3-3zeta: A complex story elucidated by NMR.

Troy C. Krzysiak, A. Gronenborn, Aurora Martínez, 2014, Biophysical journal.

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic 15N chemical shielding anisotropy tensors

J. Koča, R. Boelens, V. Sklenar, 2013, Journal of biomolecular NMR.

Strange double helix of poly (dA-dT) in high-salt solution.

V. Sklenar, M. Buděšínský, J. Kypr, 1981, Biochemical and biophysical research communications.

Nucleic Acid Quadruplexes Based on 8-Halo-9-deazaxanthines: Energetics and Noncovalent Interactions in Quadruplex Stems.

V. Sklenar, J. Novotný, R. Marek, 2014, Journal of chemical theory and computation.

Suppression of Radiation Damping in Multidimensional NMR Experiments Using Magnetic Field Gradients

V. Sklenar, 1995 .

5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion

V. Sklenar, L. Žídek, H. Šanderová, 2011, Journal of biomolecular NMR.

Substituting CF2 for O4' in Components of Nucleic Acids: Towards Systems with Reduced Propensity to Form Abasic Lesions.

V. Sklenar, J. Novotný, R. Marek, 2015, Chemistry.

Absorption mode two‐dimensional NOE spectroscopy of exchangeable protons in oligonucleotides

B. Brooks, A. Bax, G. Zon, 1987, FEBS letters.

A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC).

R. Stefl, J. Koča, V. Sklenar, 2001, Journal of molecular biology.

Suppresion of Radiation Damping in Multidimensional NMRExperiments Using Magnetic Field Gradients

V. Sklenar, 1995 .

A Method for Direct Determination of Helical Parameters in Nucleic Acids Using Residual Dipolar Couplings

J. Feigon, R. Stefl, V. Sklenar, 2000 .

Conformational perturbation due to an extra adenosine in a self‐complementary oligodeoxynucleotide duplex

E. Appella, Siddhartha Roy, V. Sklenar, 1987, Biopolymers.

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

B. Schneider, V. Sklenar, L. Žídek, 2003 .

Dispersion interactions govern the strong thermal stability of a protein.

J. Vondrášek, J. Černý, V. Sklenar, 2007, Chemistry.

Assignment of Z DNA NMR spectra of poly d(Gm5C) by two-dimensional multinuclear spectroscopy

A. Bax, G. Zon, V. Sklenar, 1987 .

Formal Concept Analysis Constrained by Attribute-Dependency Formulas

Radim Belohlávek, Vladimir Sklenar, R. Belohlávek, 2005, ICFCA.

DNA A-tract bending in three dimensions : Solving the dA 4 T 4 vs . dT 4 A 4 conundrum

J. Feigon, R. Stefl, S. Ravindranathan, 2004 .

Phosphorus nmr spectra of natural DNA fragments in the course of the B‐to‐A conformational transition

V. Sklenar, J. Kypr, Jaroslav Kypr, 1986, Biopolymers.

Enantioselective effects of alpha-hexachlorocyclohexane (HCH) isomers on androgen receptor activity in vitro.

J. Giesy, V. Sklenar, S. Bathula, 2012, Chemosphere.

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

D. Kavan, V. Křen, V. Sklenar, 2010, Journal of medicinal chemistry.

NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus.

I. Pichová, T. Ruml, V. Sklenar, 2009, Journal of molecular biology.

A simple approach to elimination of phase gradients in NMR spectra obtained with selective excitation sequences for water suppression

V. Sklenar, Ladislav Půček, 1990 .

Spectral density mapping protocols for analysis of molecular motions in disordered proteins

V. Sklenar, L. Žídek, L. Krásný, 2014, Journal of Biomolecular NMR.

NMR cross-correlated relaxation rates reveal ion coordination sites in DNA.

N. Špačková, J. Šponer, V. Sklenar, 2011, Journal of the American Chemical Society.

Formal concept analysis over attributes with levels of granularity

Radim Belohlávek, Vladimir Sklenar, R. Belohlávek, 2005, International Conference on Computational Intelligence for Modelling, Control and Automation and International Conference on Intelligent Agents, Web Technologies and Internet Commerce (CIMCA-IAWTIC'06).

Hydrogen bonding effects on the (15)N and (1)H shielding tensors in nucleic acid base pairs.

V. Sklenar, R. Fiala, J. Czernek, 2000, Journal of magnetic resonance.