Chunli Yan

发表

Computational insights for the discovery of non-ATP competitive inhibitors of MAP kinases.

Pengyu Y. Ren, M. Schnieders, T. Kaoud, 2012, Current pharmaceutical design.

Structurally distinct ubiquitin- and sumo-modified PCNA: implications for their distinct roles in the DNA damage response.

John A Tainer, Kun Yang, Xiaojun Xu, 2015, Structure.

Diamidine Compounds for Selective Inhibition of Protein Arginine Methyltransferase 1

Kun Qian, Chunli Yan, I. Ivanov, 2014, Journal of medicinal chemistry.

Near-atomic resolution visualization of human transcription promoter opening

R. Tjian, E. Nogales, Chunli Yan, 2016, Nature.

Virtual screening using molecular simulations

Ray Luo, Tianyi Yang, Pengyu Ren, 2011, Proteins.

Recognition of a Key Anchor Residue by a Conserved Hydrophobic Pocket Ensures Subunit Interface Integrity in DNA Clamps.

S. Benkovic, Xiaojun Xu, Chunli Yan, 2019, Journal of molecular biology.

From in Silico Discovery to intra-Cellular Activity: Targeting JNK-Protein Interactions with Small Molecules.

Pengyu Ren, Kevin N Dalby, Pengyu Y. Ren, 2012, ACS medicinal chemistry letters.

Manipulating JNK signaling with (--)-zuonin A.

Pengyu Y. Ren, T. Kaoud, Chunli Yan, 2012, ACS chemical biology.

Structural mechanism of ATP-independent transcription initiation by RNA polymerase I

Chunli Yan, I. Ivanov, Yan Han, 2017, eLife.

Pharmacophore-based screening of diamidine small molecule inhibitors for protein arginine methyltransferases.

Kun Qian, Chunli Yan, I. Ivanov, 2020, RSC medicinal chemistry.

Functional dynamics in RPA DNA binding and protein recruitment domains

W. Chazin, Chunli Yan, C. Brosey, 2015 .

Transcription preinitiation complex structure and dynamics provide insight into genetic diseases

J. Tainer, Chunli Yan, S. Tsutakawa, 2019, Nature Structural & Molecular Biology.

Uncovering universal rules governing the selectivity of the archetypal DNA glycosylase TDG

Chunli Yan, I. Ivanov, Bradley Kossmann, 2018, Proceedings of the National Academy of Sciences.

A quantum-mechanical study on the complexation of β-cyclodextrin with quercetin

Z. Xiu, Chunli Yan, C. Hao, 2006 .

Molecular modeling study of beta-cyclodextrin complexes with (+)-catechin and (-)-epicatechin.

Zhilong Xiu, Ce Hao, Z. Xiu, 2007, Journal of molecular graphics & modelling.

Theoretical study for quercetin/β-cyclodextrin complexes: quantum chemical calculations based on the PM3 and ONIOM2 method

Z. Xiu, Chunli Yan, Hu Teng, 2007 .

A quantum-mechanical study on the geometry of a hexacyclopeptide dichotomin A

Z. Xiu, Chunli Yan, Hu Teng, 2007 .

Natural Product Micheliolide (MCL) Irreversibly Activates Pyruvate Kinase M2 and Suppresses Leukemia

M. Luo, P. Wang, Chunli Yan, 2018, Journal of medicinal chemistry.

Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair.

J. Tainer, S. Hamdan, W. Chazin, 2020, DNA repair.

Reversible Covalent Inhibition of eEF‐2K by Carbonitriles

Pengyu Y. Ren, T. Kaoud, Chunli Yan, 2014, Chembiochem : a European journal of chemical biology.

Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy

Thomas Dodd, Chunli Yan, Ivaylo Ivanov, 2020, J. Chem. Inf. Model..

Structural visualization of RNA polymerase III transcription machineries

Chunli Yan, I. Ivanov, Yan Han, 2018, Cell Discovery.

Structural visualization of RNA polymerase III transcription machineries

Chunli Yan, I. Ivanov, Yan Han, 2018, Cell Discovery.

Mechanism of Rad26-assisted rescue of stalled RNA polymerase II in transcription-coupled repair

Dong Wang, Jin Yu, Chunli Yan, 2021, Nature Communications.

Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6

B. Stillman, Zuanning Yuan, Huilin Li, 2020, Proceedings of the National Academy of Sciences.

Quantification of a Pharmacodynamic ERK End Point in Melanoma Cell Lysates: Toward Personalized Precision Medicine.

Pengyu Y. Ren, K. Tsai, T. Kaoud, 2015, ACS medicinal chemistry letters.

Comparative molecular dynamics simulations of histone deacetylase‐like protein: Binding modes and free energy analysis to hydroxamic acid inhibitors

Z. Xiu, Chunli Yan, Hu Teng, 2008, Proteins.

Secondary Interaction Interfaces with PCNA Control Conformational Switching of DNA Polymerase PolB from Polymerization to Editing.

Xiaojun Xu, Chunli Yan, I. Ivanov, 2016, The journal of physical chemistry. B.

Functional dynamics in replication protein A DNA binding and protein recruitment domains.

W. Chazin, Chunli Yan, C. Brosey, 2015, Structure.

Rational design of a protein that binds integrin αvβ3 outside the ligand binding site

H. Grossniklaus, Jenny J. Yang, Zhi-Ren Liu, 2016, Nature Communications.

Opening pathways of the DNA clamps proliferating cell nuclear antigen and Rad9-Rad1-Hus1

Xiaojun Xu, Chunli Yan, I. Ivanov, 2013, Nucleic acids research.

A new structural framework for integrating replication protein A into DNA processing machinery

J. Tainer, W. Chazin, R. Rambo, 2013, Nucleic acids research.

A scanning-to-incision switch in TFIIH-XPG induced by DNA damage licenses nucleotide excision repair

J. Tainer, S. Hamdan, Chunli Yan, 2022, Nucleic acids research.

Structure of the human apo TFIIH

J. Tainer, Chunli Yan, S. Tsutakawa, 2019 .

NO-releasing STAT3 inhibitors suppress BRAF-mutant melanoma growth.

Heba A. Hassan, T. Kaoud, Chunli Yan, 2019, European journal of medicinal chemistry.

Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability

E. Nogales, J. Tainer, Xiaojun Xu, 2012, Proceedings of the National Academy of Sciences.

112 Structurally distinct ubiquitin- and SUMO-modified PCNA: implications for their distinct roles in the DNA damage response

J. Tainer, Xiaojun Xu, Zhihao Zhuang, 2015, Journal of biomolecular structure & dynamics.

Single-molecule FRET unveils induced-fit mechanism for substrate selectivity in flap endonuclease 1

J. Tainer, S. Hamdan, Chunli Yan, 2017, eLife.

Discovery of selective inhibitors of tyrosyl-DNA phosphodiesterase 2 by targeting the enzyme DNA-binding cleft.

Y. Pommier, Chunli Yan, I. Ivanov, 2016, Bioorganic & medicinal chemistry letters.

Examining docking interactions on ERK2 with modular peptide substrates.

Pengyu Y. Ren, T. Kaoud, Chunli Yan, 2011, Biochemistry.

Temperature-induced unfolding of epidermal growth factor (EGF): insight from molecular dynamics simulation.

James W Tunnell, Pengyu Ren, Pengyu Y. Ren, 2010, Journal of molecular graphics & modelling.

Linear free energy relationships on rate constants for the gas-phase reactions of hydroxyl radicals with PAHs and PCDD/Fs.

Guanghui Ding, Liping Huang, Liping Huang, 2005, Chemosphere.

A Model of a MAPK•Substrate Complex in an Active Conformation: A Computational and Experimental Approach

T. Kaoud, Chunli Yan, K. Dalby, 2011, PloS one.

Dynamic conformational switching underlies TFIIH function in transcription and DNA repair and impacts genetic diseases

J. Tainer, Chunli Yan, S. Tsutakawa, 2023, Nature communications.

Transcription preinitiation complex structure and dynamics provide insight into genetic diseases

J. Tainer, Chunli Yan, S. Tsutakawa, 2019, Nature Structural & Molecular Biology.

Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution

Chunli Yan, Ivaylo Ivanov, Xiaojun Xu, 2015, Computational and structural biotechnology journal.

QSAR and Molecular Stereoelectronic Properties of Phloroglucinol Derivatives as Potential Anti-Tumor Agents

Z. Xiu, Chunli Yan, Hu Teng, 2008, 2008 2nd International Conference on Bioinformatics and Biomedical Engineering.

Discovery of Decamidine as a New and Potent PRMT1 Inhibitor.

Yujun George Zheng, Ivaylo Ivanov, Kun Qian, 2017, MedChemComm.

Quantification of a Pharmacodynamic ERK End Point in Melanoma Cell Lysates: Toward Personalized Precision Medicine.

Pengyu Y. Ren, K. Tsai, Chunli Yan, 2015, ACS medicinal chemistry letters.