A. Makhov

发表

Structural and Biophysical Characterization of the Proteins Interacting with the Herpes Simplex Virus 1 Origin of Replication

P. Tucker, P. Cary, D. Svergun, 2009, The Journal of Biological Chemistry.

Origin-specific unwinding of herpes simplex virus 1 DNA by the viral UL9 and ICP8 proteins: Visualization of a specific preunwinding complex

I. Lehman, J. Griffith, A. Makhov, 2003, Proceedings of the National Academy of Sciences of the United States of America.

The herpes simplex virus type 1 origin‐binding protein carries out origin specific DNA unwinding and forms stem‐loop structures.

I. Lehman, J. Griffith, P. Boehmer, 1996, The EMBO journal.

Running title: Fab induces conformational changes to HPV16 capsids

A. Makhov, Hyunwook Lee, S. Brendle, 2014 .

Running title : Fab induces conformational changes to HPV 16 capsids 4 5

A. Makhov, Hyunwook Lee, S. Brendle, 2014 .

A Cryo-Electron Microscopy Study Identifies the Complete H16.V5 Epitope and Reveals Global Conformational Changes Initiated by Binding of the Neutralizing Antibody Fragment

Neil D. Christensen, Susan Hafenstein, James F. Conway, 2014, Journal of Virology.

Human Hsp70 and Hsp40 Chaperone Proteins Facilitate Human Papillomavirus-11 E1 Protein Binding to the Origin and Stimulate Cell-free DNA Replication*

T. R. Broker, J. Griffith, A. Makhov, 1998, The Journal of Biological Chemistry.

Unpacking a gel-forming mucin: a view of MUC5B organization after granular release.

J. Griffith, A. Makhov, J. Sheehan, 2010, American journal of physiology. Lung cellular and molecular physiology.

Characterization of Spherulites as a Lipidic Carrier for Low and High Molecular Weight Agents

Peijun Zhang, A. Makhov, Song Li, 2013, Pharmaceutical Research.

Regulation of origin recognition complex conformation and ATPase activity: differential effects of single‐stranded and double‐stranded DNA binding

S. Bell, J. Griffith, R. Klemm, 2000, The EMBO journal.

The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs

A. Makhov, Hyunwook Lee, R. Ashley, 2016, Science Advances.

Luminescence characteristics of Pb2+ centres in undoped and Ce3+-doped Lu3Al5O12 single-crystalline films and Pb2+→Ce3+ energy transfer processes

A. Makhov, M. Nikl, J. Mares, 2007 .

Structures of the Procapsid and Mature Virion of Enterovirus 71 Strain 1095

A. Makhov, Hyunwook Lee, R. Ashley, 2013, Journal of Virology.

F-actin binding is essential for coronin 1B function in vivo

A. Makhov, Liang Cai, J. Bear, 2007, Journal of Cell Science.

Structural comparison of four different antibodies interacting with human papillomavirus 16 and mechanisms of neutralization.

A. Makhov, Hyunwook Lee, S. Brendle, 2015, Virology.

Engineering of betabellin 15D: Copper(II)-induced folding of a fibrillar β-sandwich protein

R. Anderegg, B. W. Erickson, J. Griffith, 2004, Letters in peptide science.

Mitochondrial fatty acid oxidation and the electron transport chain comprise a multifunctional mitochondrial protein complex

Simon C Watkins, Yudong Wang, J. Vockley, 2019, The Journal of Biological Chemistry.

An intramolecular salt bridge drives the soluble domain of GTP-bound atlastin into the postfusion conformation

Peijun Zhang, A. Makhov, Tina H Lee, 2011, The Journal of cell biology.

Defective postsecretory maturation of MUC5B mucin in cystic fibrosis airways.

J. Griffith, A. Makhov, L. Abdullah, 2017, JCI insight.

Structural features of the Bluetongue virus NS2 protein.

P. Tucker, M. Roessle, E. Mumtsidu, 2007, Journal of structural biology.

High-resolution asymmetric structure of a Fab–virus complex reveals overlap with the receptor binding site

A. Makhov, R. Ashley, J. Conway, 2021, Proceedings of the National Academy of Sciences.

Mechanisms of antibody binding revealed by asymmetric Fab-virus complexes

A. Makhov, R. Ashley, J. Conway, 2020, bioRxiv.

Analysis of DNA replication forks encountering a pyrimidine dimer in the template to the leading strand.

J. Griffith, A. Makhov, M. Cordeiro‐Stone, 1999, Journal of molecular biology.

Analysis of the Okazaki fragment distributions along single long DNAs replicated by the bacteriophage T4 proteins.

J. Griffith, A. Makhov, P. Chastain, 2000, Molecular cell.

Architecture of the Replication Complex and DNA Loops at the Fork Generated by the Bacteriophage T4 Proteins*

J. Griffith, A. Makhov, P. Chastain, 2003, Journal of Biological Chemistry.

Chaperone Proteins Abrogate Inhibition of the Human Papillomavirus (HPV) E1 Replicative Helicase by the HPV E2 Protein

T. R. Broker, J. Griffith, A. Makhov, 2002, Molecular and Cellular Biology.

Two-dimensional crystallization of herpes simplex virus type 1 single-stranded DNA-binding protein, ICP8, on a lipid monolayer.

J. Griffith, A. Makhov, Dianne W. Taylor, 2004, Biochimica et biophysica acta.

High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitopes on Human Papillomavirus 16

A. Makhov, S. Brendle, S. Bywaters, 2017, Viruses.

Honey Bee Deformed Wing Virus Structures Reveal that Conformational Changes Accompany Genome Release

E. Capaldi, A. Makhov, R. Ashley, 2016, Journal of Virology.

Nanoassembly of surfactants with interfacial drug-interactive motifs as tailor-designed drug carriers.

P. Wipf, X. Xie, Peijun Zhang, 2013, Molecular pharmaceutics.

Visualization of the annealing of complementary single-stranded DNA catalyzed by the herpes simplex virus type 1 ICP8 SSB/recombinase.

J. Griffith, A. Makhov, 2006, Journal of molecular biology.

Electron microscopic visualization of RecT protein and its complexes with DNA.

R. Kolodner, J. Griffith, A. Makhov, 1995, Journal of molecular biology.

Structure of the pseudorabies virus capsid: comparison with herpes simplex virus type 1 and differential binding of essential minor proteins.

F. Homa, A. Makhov, J. Conway, 2013, Journal of molecular biology.

t-Loops in yeast mitochondria.

L. Tomáška, J. Griffith, A. Makhov, 2002, Mitochondrion.

Origin of Bi3+‐related luminescence centres in Lu3Al5O12:Bi and Y3Al5O12:Bi single crystalline films and the structure of their relaxed excited states

A. Makhov, E. Mihóková, M. Nikl, 2012 .

Photoluminescence of Lu3Al5O12:Bi and Y3Al5O12:Bi single crystalline films

A. Makhov, M. Nikl, A. Krasnikov, 2010 .

Peculiarities of excited state structure and photoluminescence in Bi3+-doped Lu3Al5O12 single-crystalline films

A. Makhov, K. Polák, M. Nikl, 2009, Journal of physics. Condensed matter : an Institute of Physics journal.

Electron microscopy of DNA-protein complexes and chromatin.

J. Griffith, A. Makhov, S. Michalowski, 1999, Methods in enzymology.

Luminescence and ESR Study of Irregular Ce$^{3+}$ Ions in LuAG:Ce Single Crystals

A. Makhov, V. Laguta, M. Nikl, 2008, IEEE Transactions on Nuclear Science.

Disulfide Bond Formation Contributes to Herpes Simplex Virus Capsid Stability and Retention of Pentons

R. Szczepaniak, A. Makhov, S. Weller, 2011, Journal of Virology.

Studies on the genetic determinants of influenza virus pathogenicity for mice with the use of reassortants between mouse-adapted and non-adapted variants of the same virus strain

A. Makhov, N. Kaverin, I. Rudneva, 2005, Archives of Virology.

Structural features of the single-stranded DNA-binding protein of Epstein-Barr virus.

P. Tucker, J. Griffith, E. Mumtsidu, 2008, Journal of structural biology.

Luminescence of dimer lead centers in aluminium perovskites and garnets

A. Vedda, A. Makhov, E. Mihóková, 2009 .

Luminescence of F+‐type centers in undoped Lu3Al5O12 single crystals

A. Makhov, V. Laguta, M. Nikl, 2011 .

The role of Pb2+ ions in the luminescence of LuAG:Ce single crystalline films

A. Makhov, M. Nikl, Y. Zorenko, 2007 .

Transmission electron microscopy for the evaluation and optimization of crystal growth.

Troy C. Krzysiak, A. Gronenborn, A. Cohen, 2016, Acta crystallographica. Section D, Structural biology.

Time‐resolved spectroscopy of exciton‐related states in single crystals and single crystalline films of Lu3Al5O12 and Lu3Al5O12:Ce

A. Makhov, M. Nikl, V. Gorbenko, 2011 .

Influence of lead-related centers on luminescence of Ce3+ and Pr3+ centers in single crystalline films of aluminium perovskites and garnets

A. Makhov, M. Nikl, A. Krasnikov, 2010 .

Cryoelectron Microscopy Maps of Human Papillomavirus 16 Reveal L2 Densities and Heparin Binding Site.

A. Makhov, S. Brendle, S. Bywaters, 2017, Structure.

Cryoelectron Microscopy Maps of Human Papillomavirus 16 Reveal L 2 Densities and Heparin Binding Site Highlights

A. Makhov, S. Brendle, S. Bywaters, 2022 .

The Enterovirus 71 Procapsid Binds Neutralizing Antibodies and Rescues Virus Infection In Vitro

A. Makhov, R. Ashley, J. Conway, 2014, Journal of Virology.

A Strain-Specific Epitope of Enterovirus 71 Identified by Cryo-Electron Microscopy of the Complex with Fab from Neutralizing Antibody

A. Makhov, R. Ashley, J. Conway, 2013, Journal of Virology.

Electron microscopic studies of the interaction between a Bacillus subtilis alpha/beta-type small, acid-soluble spore protein with DNA: protein binding is cooperative, stiffens the DNA, and induces negative supercoiling.

J. Griffith, A. Makhov, P. Setlow, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Pol of gag–pol fusion protein required for encapsidation of viral RNA of yeast L-A virus

R. Wickner, T. Fujimura, A. Makhov, 1992, Nature.

Prediction of terminal protein and ribonuclease H domains in the gene P product of hepadnaviruses

A. Makhov, Y. Khudyakov, 1989, FEBS letters.

Amplification of Telomeric Arrays via Rolling-circle Mechanism*

L. Tomáška, J. Griffith, A. Makhov, 2005, Journal of Biological Chemistry.

cells.simplex virus type 1-infected human Rolling circle DNA replication by extracts of

I. Lehman, J. Griffith, A. Makhov, 2012 .

Rolling circle DNA replication by extracts of herpes simplex virus type 1-infected human cells

I. Lehman, J. Griffith, A. Makhov, 1996, Journal of virology.

Coronin 1B Antagonizes Cortactin and Remodels Arp2/3-Containing Actin Branches in Lamellipodia

A. Makhov, Liang Cai, J. Bear, 2008, Cell.

hMSH2-hMSH6 forms a hydrolysis-independent sliding clamp on mismatched DNA.

J. Griffith, R. Fishel, D. Subramanian, 1999, Molecular cell.

Amino acid sequence similarity between the terminal protein of hepatitis B virus and predicted hepatitis delta virus gene product

A. Makhov, Y. Khudyakov, 1990, FEBS letters.

Visualization of the unwinding of long DNA chains by the herpes simplex virus type 1 UL9 protein and ICP8.

I. Lehman, J. Griffith, P. Boehmer, 1996, Journal of molecular biology.

Theherpes simplex virus type1origin-binding protein carries outorigin specific DNA unwinding andformsunwoundstem-loop structures

I. Lehman, A. Makhov, 1996 .

Hairpin Formation in Friedreich's Ataxia Triplet Repeat Expansion*

Brooke L Heidenfelder, M. D. Topal, A. Makhov, 2003, The Journal of Biological Chemistry.

Details of ssDNA annealing revealed by an HSV-1 ICP8–ssDNA binary complex

Steven J. Ludtke, Jack D. Griffith, S. Ludtke, 2013, Nucleic acids research.

The bipolar filaments formed by herpes simplex virus type 1 SSB/recombination protein (ICP8) suggest a mechanism for DNA annealing.

Edward H Egelman, Xiong Yu, E. Egelman, 2009, Journal of molecular biology.

Extensive subunit contacts underpin herpesvirus capsid stability and interior-to-exterior allostery

F. Homa, A. Makhov, M. Vos, 2016, Nature Structural &Molecular Biology.

Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-Particle

A. Makhov, J. Conway, S. Hafenstein, 2014, Journal of Virology.

MutS mediates heteroduplex loop formation by a translocation mechanism

J. Griffith, A. Makhov, P. Modrich, 1997, The EMBO journal.

Visualization of TBP oligomers binding and bending the HIV-1 and adeno promoters.

D. Reinberg, L. Zawel, J. Griffith, 1995, Journal of molecular biology.

The Enterovirus 71 A-particle Forms a Gateway to Allow Genome Release: A CryoEM Study of Picornavirus Uncoating

Susan Hafenstein, James F. Conway, A. Makhov, 2013, PLoS pathogens.

Preferential binding of ATR protein to UV-damaged DNA

J. Griffith, A. Sancar, A. Makhov, 2002, Proceedings of the National Academy of Sciences of the United States of America.

The Epstein-Barr Virus Polymerase Accessory Factor BMRF1 Adopts a Ring-shaped Structure as Visualized by Electron Microscopy*

J. Griffith, S. Kenney, D. Subramanian, 2004, Journal of Biological Chemistry.

Architecture of the Bacteriophage T4 Replication Complex Revealed with Nanoscale Biopointers*

J. Griffith, A. Makhov, P. Chastain, 2007, Journal of Biological Chemistry.

Electron microscopic analysis supports a dual role for the mitochondrial telomere-binding protein of Candida parapsilosis.

L. Tomáška, J. Griffith, A. Makhov, 2001, Journal of molecular biology.

Near-Atomic Resolution Structure of a Highly Neutralizing Fab Bound to Canine Parvovirus

A. Makhov, R. Ashley, J. Conway, 2016, Journal of Virology.

Betabellins 15D and 16D, de Novo designed beta-sandwich proteins that have amyloidogenic properties.

B. W. Erickson, D. Kirschner, J. Griffith, 2000, Journal of structural biology.

The Cullin-RING E3 ubiquitin ligase CRL4-DCAF1 complex dimerizes via a short helical region in DCAF1.

A. Gronenborn, Peijun Zhang, A. Makhov, 2011, Biochemistry.

On the ratio of the K+ C-12 and K+ d total cross-sections

A. Makhov, Y. Berdnikov, 1990 .

Regulation of the Interaction of Inosine Monophosphate Dehydrogenase with Mycophenolic Acid by GTP*

Beverly S Mitchell, B. Mitchell, J. Griffith, 2006, Journal of Biological Chemistry.

Use of transmission electron microscopy to identify nanocrystals of challenging protein targets

C. Khosla, A. Cohen, A. Edwards, 2014, Proceedings of the National Academy of Sciences.

Preferential binding of ATR protein to

J. Griffith, A. Sancar, A. Makhov, 2002 .

Open-channel structures of the human glycine receptor α1 full-length transmembrane domain.

Peijun Zhang, A. Makhov, D. Mowrey, 2013, Structure.

Extragenomic double-stranded DNA circles in yeast with linear mitochondrial genomes: potential involvement in telomere maintenance.

L. Tomáška, J. Griffith, A. Makhov, 2000, Nucleic acids research.

A. Makhov, B. Mukashev, K. Abdullin, 1996 .

Characterization of Spherulites as a Lipidic Carrier for Low and High Molecular Weight Agents

Peijun Zhang, A. Makhov, Song Li, 2013, Pharmaceutical Research.

Transmission electron microscopy as a tool for nanocrystal characterization pre- and post-injector

S. Boutet, D. DePonte, A. Cohen, 2014, Philosophical Transactions of the Royal Society B: Biological Sciences.

characterization pre- and post-injector Transmission electron microscopy as a tool for nanocrystal

S. Boutet, D. DePonte, A. Cohen, 2014 .

Filamentous hemagglutinin of Bordetella pertussis. A bacterial adhesin formed as a 50-nm monomeric rigid rod based on a 19-residue repeat motif rich in beta strands and turns.

J. H. Hannah, B. Trus, J. Conway, 1994, Journal of molecular biology.

Biophysical characterization of betabellin 16D: a beta-sandwich protein that forms narrow fibrils which associate into broad ribbons.

B. W. Erickson, J. Griffith, A. Makhov, 1999, Biochemical and biophysical research communications.

The short tail-fiber of bacteriophage T4: molecular structure and a mechanism for its conformational transition.

B L Trus, A C Steven, B. Trus, 1993, Virology.

Correction: The Enterovirus 71 A-particle Forms a Gateway to Allow Genome Release: A CryoEM Study of Picornavirus Uncoating

A. Makhov, R. Ashley, J. Conway, 2013, PLoS Pathogens.

Engineering of betabellin‐15d: A 64 residue beta sheet protein that forms long narrow multimeric fibrils

B. W. Erickson, L. Perera, J. Griffith, 1998, Protein science : a publication of the Protein Society.

Characterization of betabellins 15D and 16D, designed beta-sandwich proteins that have amyloidogenic properties

B. W. Erickson, D. Kirschner, J. Griffith, 2002 .

Cryo-EM maps reveal five-fold channel structures and their modification by gatekeeper mutations in the parvovirus minute virus of mice (MVM) capsid.

A. Makhov, J. Conway, S. Hafenstein, 2017, Virology.

Study of avian adenovirus DNA infectivity in chick embryos.

A. Makhov, B. Naroditsky, O. Karpova, 1987, Acta virologica.