J. Dresch

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Distributed under Creative Commons Cc-by 4.0 Global Sensitivity Analysis of a Dynamic Model for Gene Expression in Drosophila Embryos

Jacqueline M. Dresch, Robert A. Drewell, R. A. Drewell, 2022 .

Global parameter estimation for thermodynamic models of transcriptional regulation.

Saurabh Sinha, Ahmet Ay, Md. Abul Hassan Samee, 2013, Methods.

A primer on thermodynamic-based models for deciphering transcriptional regulatory logic.

Jacqueline M. Dresch, J. Dresch, A. Ay, 2013, Biochimica et biophysica acta.

A two-scale mathematical model for DNA transcription.

Chichia Chiu, D. Arnosti, W. Fakhouri, 2012, Mathematical biosciences.

Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryo

Ahmet Ay, Jacqueline M. Dresch, David N Arnosti, 2010, Molecular systems biology.

Network structure, and vaccination strategy and effort interact to affect the dynamics of influenza epidemics.

A J Macula, G. Hartvigsen, A. Macula, 2007, Journal of theoretical biology.

Analyzing the stability of gene expression using a simple reaction-diffusion model in an early Drosophila embryo.

Jacqueline M. Dresch, R. A. Drewell, Gregory D. Mccarthy, 2019, Mathematical biosciences.

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome

Jacqueline M. Dresch, R. A. Drewell, J. Dresch, 2016, Gene regulation and systems biology.

Flanking sequence context-dependent transcription factor binding in early Drosophila development

Jacqueline M. Dresch, Adam S. Brown, R. A. Drewell, 2013, BMC Bioinformatics.

Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer

Jacqueline M. Dresch, R. A. Drewell, J. Dresch, 2014, Mechanisms of Development.

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo

Jacqueline M. Dresch, Jacqueline M Dresch, David N Arnosti, 2016, eLife.

Flanking sequence context-dependent transcription factor binding in early Drosophila development

Jacqueline M. Dresch, Adam S. Brown, Robert A. Drewell, 2013, BMC Bioinformatics.

Whole genome bisulfite sequencing reveals a sparse, but robust pattern of DNA methylation in the Dictyostelium discoideum genome

Jacqueline M. Dresch, Jacob L. Steenwyk, R. A. Drewell, 2017, bioRxiv.

Rapid and efficient purification of Drosophila homeodomain transcription factors for biophysical characterization.

Jacqueline M. Dresch, R. A. Drewell, J. Dresch, 2019, Protein expression and purification.

Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks

Jacqueline M. Dresch, R. A. Drewell, J. Dresch, 2016, Mechanisms of Development.

Two-Layer Mathematical Modeling of Gene Expression: Incorporating DNA-Level Information and System Dynamics

Jacqueline M. Dresch, David N. Arnosti, Marc A. Thompson, 2013, SIAM J. Appl. Math..

The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

Xiaodong Wang, Jacqueline M. Dresch, Abdulkadir Elmas, 2017, PloS one.

MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding

Jacqueline M. Dresch, Rowan G. Zellers, Robert A. Drewell, 2015, BMC Bioinformatics.

Fitting thermodynamic-based models: Incorporating parameter sensitivity improves the performance of an evolutionary algorithm.

Jacqueline M. Dresch, R. A. Drewell, J. Dresch, 2021, Mathematical biosciences.

The Dictyostelium discoideum genome lacks significant DNA methylation and uncovers palindromic sequences as a source of false positives in bisulfite sequencing

Jacqueline M. Dresch, Javier F. Tabima, R. A. Drewell, 2023, NAR genomics and bioinformatics.