D. Rhodes

发表

The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: How receptors discriminate between their response elements

John W. R. Schwabe, Lynda Chapman, Daniela Rhodes, 1993, Cell.

Structure of yeast phenylalanine tRNA at 3 Å resolution

B. Clark, A. Klug, J. Finch, 1974, Nature.

Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure

D. Rhodes, S. Sandin, A. Routh, 2008, Proceedings of the National Academy of Sciences.

G-quadruplexes and their regulatory roles in biology

H. Lipps, D. Rhodes, 2015, Nucleic acids research.

A Method for Genetically Installing Site-Specific Acetylation in Recombinant Histones Defines the Effects of H3 K56 Acetylation

J. Chin, T. Owen-Hughes, L. Chapman, 2009, Molecular cell.

Sequence-specific DNA binding by a two zinc-finger peptide from the Drosophila melanogaster Tramtrack protein.

A. Travers, D. Rhodes, L. Fairall, 1992, Journal of molecular biology.

The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition

John W. R. Schwabe, Louise Fairall, Lynda Chapman, 1993, Nature.

Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber

Colin Logie, Maarten Kruithof, Andrew Routh, 2009, Nature Structural &Molecular Biology.

Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo

Jan Postberg, Daniela Rhodes, Katrin Paeschke, 2005, Nature Structural &Molecular Biology.

Telomere architecture

L. Chapman, D. Rhodes, L. Fairall, 2002, EMBO reports.

Adjacent zinc-finger motifs in multiple zinc-finger peptides from SWI5 form structurally independent, flexibly linked domains.

A Klug, D Neuhaus, A. Klug, 1992, Journal of molecular biology.

Structure of the nucleosome core particle at 7 Å resolution

A. Klug, T. Richmond, J. Finch, 1984, Nature.

Combinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatin

D. Higgs, L. Chapman, D. Rhodes, 2011, Nature Structural &Molecular Biology.

Structural consequences of disease-causing mutations in the ATRX-DNMT3-DNMT3L (ADD) domain of the chromatin-associated protein ATRX

Monika S. Kowalczyk, D. Higgs, L. Chapman, 2007, Proceedings of the National Academy of Sciences.

The human telomeric protein hTRF1 induces telomere-specific nucleosome mobility

D. Rhodes, S. Cacchione, S. Pisano, 2010, Nucleic acids research.

The Crystal Structure of the DNA-Binding Domain of Yeast RAP1 in Complex with Telomeric DNA

Peter König, Lynda Chapman, Daniela Rhodes, 1996, Cell.

A new approach to the analysis of DNase I footprinting data and its application to the TFIIIA/5S DNA complex.

D. Rhodes, L. Fairall, 1992, Nucleic acids research.

Distortion of the DNA double helix by RAP1 at silencers and multiple telomeric binding sites.

E. Gilson, S. Gasser, M. Roberge, 1993, Journal of molecular biology.

The solution structure of the first zinc finger domain of SWI5: a novel structural extension to a common fold.

D. Rhodes, D. Neuhaus, R. Dutnall, 1996, Structure.

Switching affinities in nuclear trafficking

D. Rhodes, M. Stewart, 1999, Nature Structural Biology.

Molecular interactions between the importin α/β heterodimer and proteins involved in vertebrate nuclear protein import

D. Rhodes, M. Stewart, P. Percipalle, 1997 .

Structure of the TRFH dimerization domain of the human telomeric proteins TRF1 and TRF2.

L. Chapman, D. Rhodes, T. Lange, 2001, Molecular cell.

Telomerase recruitment by the telomere end binding protein-β facilitates G-quadruplex DNA unfolding in ciliates

H. Lipps, D. Rhodes, S. Juranek, 2008, Nature Structural &Molecular Biology.

Promotion of parallel DNA quadruplexes by a yeast telomere binding protein: a circular dichroism study.

L. Chapman, D. Rhodes, R. Giraldo, 1994, Proceedings of the National Academy of Sciences of the United States of America.

ACF catalyses chromatosome movements in chromatin fibres

D. Rhodes, P. Becker, V. Maier, 2008, The EMBO journal.

Transcriptional Regulation of the Ambient Temperature Response by H2A.Z Nucleosomes and HSF1 Transcription Factors in Arabidopsis.

Katja E. Jaeger, C. Ravarani, D. Rhodes, 2017, Molecular plant.

Structural analysis of a triple complex between the histone octamer, a Xenopus gene for 5S RNA and transcription factor IIIA.

D. Rhodes, 1985, The EMBO journal.

MRG15-mediated tethering of PALB2 to unperturbed chromatin protects active genes from genotoxic stress

K. Shirahige, Marjorie Fournier, D. Rhodes, 2017, Proceedings of the National Academy of Sciences.

The columnar structure of human telomeric chromatin suggests mechanisms for telomere maintenance

N. Korolev, L. Nordenskiöld, D. Rhodes, 2022, bioRxiv.

Cell cycle-dependent regulation of telomere tethering in the nucleus

H. Lipps, D. Rhodes, S. Juranek, 2008, Chromosome Research.

Telomere structure and function.

D. Rhodes, R. Giraldo, 1995, Current opinion in structural biology.

[27] Assembly of nucleosomes and chromatin in Vitro

D. Rhodes, R. Laskey, 1989 .

Structural basis of G-quadruplex DNA recognition by the yeast telomeric protein Rap1

D. Rhodes, C. W. Liew, A. Traczyk, 2020, Nucleic acids research.

Putting the finger on DNA

D. Rhodes, D. Neuhaus, 1991, Current Biology.

Comparisons of gene colinearity in genomes using GeneOrder2.0

B. Clark, A. Klug, D. Rhodes, 2001 .

The role of histone H1 in chromatin condensation and transcriptional repression

A. Travers, D. Rhodes, M. Buttinelli, 2004, Genetica.

The human telomeric nucleosome displays distinct structural and dynamic properties

V. Olieric, N. Korolev, D. Rhodes, 2019, bioRxiv.

Columnar structure of human telomeric chromatin

N. Korolev, L. Nordenskiöld, D. Rhodes, 2022, Nature.

Sequence-specific DNA recognition by the myb-like domain of the human telomere binding protein TRF1: a model for the protein-DNA complex.

D. Rhodes, P. König, L. Fairall, 1998, Nucleic acids research.

Direct quantification of the translocation activities of Saccharomyces cerevisiae Pif1 helicase

Jie Yan, D. Rhodes, K. Raney, 2019, Nucleic acids research.

An underlying repeat in some transcriptional control sequences corresponding to half a double helical turn of DNA

A. Klug, D. Rhodes, 1986, Cell.

EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Louise Fairall, Daniela Rhodes, Philip J. J. Robinson, 2006, Proceedings of the National Academy of Sciences of the United States of America.

In vitro reconstitution of nucleosome arrays with a stoichiometric content of histone octamer and linker histone ( PROT 42 )

D. Rhodes, A. Routh, 2011 .

The cocrystal structures of two zinc-stabilized DNA-binding domains illustrate different ways of achieving sequence-specific DNA recognition.

J. Finch, J. Schwabe, L. Chapman, 1993, Cold Spring Harbor Symposia on Quantitative Biology.

Recognition of telomeric DNA.

D. Rhodes, P. König, 1997, Trends in biochemical sciences.

‘Zinc fingers’: a novel protein motif for nucleic acid recognition

Aaron Klug, Daniela Rhodes, A. Klug, 1987 .

Assembly of nucleosomes and chromatin in vitro.

D. Rhodes, R. Laskey, 1989, Methods in Enzymology.

The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation.

J. Schwabe, L. Chapman, D. Rhodes, 1995, Structure.

Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones.

D. Rhodes, D Rhodes, 1979, Nucleic acids research.

Eukaryotic RNA polymerase II binds to nucleosome cores from transcribed genes

D. Rhodes, B. Baer, 1983, Nature.

ATR-X Syndrome Protein Targets Tandem Repeats and Influences Allele-Specific Expression in a Size-Dependent Manner

Steven J. M. Jones, J. Ragoussis, I. Dunham, 2010, Cell.

G-quadruplex structures: in vivo evidence and function.

Daniela Rhodes, H. Lipps, D. Rhodes, 2009, Trends in cell biology.

Helical periodicity of DNA on and off the nucleosome as probed by nucleases.

A Klug, A. Klug, D. Rhodes, 1983, Cold Spring Harbor symposia on quantitative biology.

Crystallization of pure species of bacterial tRNA for x-ray diffraction studies.

B. Clark, A. Klug, J. Finch, 1972, European journal of biochemistry.

A crystallographic study of metal-binding to yeast phenylalanine transfer RNA.

A Klug, J E Ladner, A. Klug, 1977, Journal of molecular biology.

The yeast telomere‐binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA.

D. Rhodes, R. Giraldo, 1994, The EMBO journal.

A low resolution structure for the histone core of the nucleosome

A. Klug, J. Finch, D. Rhodes, 1980, Nature.

A Tail-Based Mechanism Drives Nucleosome Demethylation by the LSD2/NPAC Multimeric Complex.

S. Subramaniam, G. Schoehn, F. Forneris, 2019, Cell reports.

TRF1 binds a bipartite telomeric site with extreme spatial flexibility

J. Griffith, D. Rhodes, L. Fairall, 1999, The EMBO journal.

The N-terminal acetylation of Sir3 stabilizes its binding to the nucleosome core particle

I. S. Fernández, D. Rhodes, F. Martino, 2013, Nature Structural &Molecular Biology.

Structure of the '30 nm' chromatin fibre: a key role for the linker histone.

D. Rhodes, P. Robinson, P. Robinson, 2006, Current opinion in structural biology.

Reconstitution of yeast silent chromatin: multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro.

Monika Tsai-Pflugfelder, S. Gasser, F. van Leeuwen, 2009, Molecular cell.

The uncharacterized SANT and BTB domain-containing protein SANBR inhibits class switch recombination

S. Elledge, D. Rhodes, Allysia J. Matthews, 2021, The Journal of biological chemistry.

KIAA1841, a novel SANT and BTB domain-containing protein, inhibits class switch recombination

S. Elledge, D. Rhodes, Allysia J. Matthews, 2020, bioRxiv.

Zinc fingers: a novel protein fold for nucleic acid recognition.

A Klug, A. Klug, D. Rhodes, 1987, Cold Spring Harbor symposia on quantitative biology.

Gene-Specific H1 Eviction through a Transcriptional Activator→p300→NAP1→H1 Pathway.

R. Roeder, T. Nakadai, D. Rhodes, 2019, Molecular cell.

“Zinc Fingers”: A Novel Motif for Nucleic Acid Binding

A. Klug, D. Rhodes, 1988 .

Beyond zinc fingers: steroid hormone receptors have a novel structural motif for DNA recognition.

J. Schwabe, D. Rhodes, 1991, Trends in biochemical sciences.

Structural basis of G-quadruplex DNA recognition by the yeast telomeric protein Rap1

D. Rhodes, C. W. Liew, A. Traczyk, 2020, Nucleic acids research.

NME proteins regulate class switch recombination

J. Chaudhuri, D. Rhodes, Simin Zheng, 2018, FEBS letters.

Identification and Characterization of an Essential Telomeric Repeat Binding Factor in Fission Yeast*

D. Rhodes, T. Simonsson, C. Pitt, 2008, Journal of Biological Chemistry.

DNA recognition by the oestrogen receptor: from solution to the crystal.

D Neuhaus, J W Schwabe, L Chapman, 1993, Structure.

Zinc-finger motifs expressed in E. coli and folded in vitro direct specific binding to DNA

K. Nasmyth, K. Nagai, D. Rhodes, 1988, Nature.

A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone.

D. Rhodes, Van A T Huynh, P. Robinson, 2005, Journal of molecular biology.

Structure of nucleosome core particles of chromatin

L. C. Lutter, M. Levitt, A. Klug, 1977, Nature.

Mapping of the sites of protection on a 5 S RNA gene by the Xenopus transcription factor IIIA. A model for the interaction.

A. Klug, D. Rhodes, L. Fairall, 1986, Journal of molecular biology.

Structure of Active, Dimeric Human Telomerase

Sara Sandin, Gaël Cristofari, Daniela Rhodes, 2013, Nature Structural &Molecular Biology.

Localization of a putative transcriptional regulator (ATRX) at pericentromeric heterochromatin and the short arms of acrocentric chromosomes.

A. Pombo, W. Bickmore, D. Higgs, 1999, Proceedings of the National Academy of Sciences of the United States of America.

The human telomeric protein TRF1 specifically recognizes nucleosomal binding sites and alters nucleosome structure.

L. Chapman, D. Rhodes, S. Cacchione, 2006, Journal of molecular biology.

How the human telomeric proteins TRF1 and TRF2 recognize telomeric DNA: a view from high‐resolution crystal structures

Louise Fairall, Lynda Chapman, Daniela Rhodes, 2005, EMBO reports.

Structure of the DNA-binding domain of human telomeric protein, TRF1 and its interaction with telomeric DNA.

D. Rhodes, Y. Nishimura, H. Okamura, 2001, Nucleic acids research. Supplement.

Structure of yeast phenylalanine transfer RNA at 2.5 A resolution.

A Klug, J E Ladner, B. Clark, 1975, Proceedings of the National Academy of Sciences of the United States of America.

30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.

R. Roeder, L. Chapman, D. Rhodes, 2008, Journal of molecular biology.

Insights into POT1 structural dynamics revealed by cryo-EM

D. Rhodes, Emmanuel W Smith, S. Lattmann, 2022, PloS one.

Towards an understanding of protein-DNA recognition.

J. Schwabe, L. Chapman, D. Rhodes, 1996, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

Sequence-dependent helical periodicity of DNA

A. Klug, D. Rhodes, Daniela Rhodes, 1981, Nature.

Solution structure of the DNA-binding domain of the oestrogen receptor.

J. Schwabe, D. Rhodes, D. Neuhaus, 1990, Nature.

Effects of breast fibroepithelial tumor associated retinoic acid receptor alpha ligand binding domain mutations on receptor function and retinoid signaling

P. Tan, B. Teh, D. Rhodes, 2022, bioRxiv.

Solution structure of a telomeric DNA complex of human TRF1.

D. Rhodes, P. König, Y. Nishimura, 2001, Structure.

The helical periodicities of DNA in solution and in chromatin

D. Rhodes, 1982 .

Helical periodicity of DNA determined by enzyme digestion

A. Klug, D. Rhodes, A. Klug, 1980, Nature.

Location of the primary sites of micrococcal nuclease cleavage on the nucleosome core.

A. Klug, D. Rhodes, M. Cockell, 1983, Journal of molecular biology.

DEK influences the trade-off between growth and arrest via H2A.Z-nucleosomes in Arabidopsis

Cláudia Martinho, C. Jonak, Daphne Ezer, 2019, bioRxiv.

Specific interactions of the telomeric protein Rap1p with nucleosomal binding sites.

L. Chapman, D. Rhodes, S. Cacchione, 2001, Journal of molecular biology.

A telomerase-associated RecQ protein-like helicase resolves telomeric G-quadruplex structures during replication

J. Postberg, H. Lipps, D. Rhodes, 2012, Gene.

Signal transduction: Fast lane to transcriptional activation

J. Schwabe, D. Rhodes, 1998, Current Biology.

Linkers made to measure

J. Schwabe, D. Rhodes, 1997, Nature Structural Biology.

TELOMERIC DNA RECOGNITION

D. Rhodes, 1999 .

RHAU helicase stabilizes G4 in its nucleotide-free state and destabilizes G4 upon ATP hydrolysis

Jie Yan, Daniela Rhodes, Jie Yan, 2016, Nucleic acids research.

AKTIP interacts with ESCRT I and is needed for the recruitment of ESCRT III subunits to the midbody

Jeremy G. Carlton, C. Stewart, D. Raimondo, 2021, PLoS genetics.

Human AKTIP interacts with ESCRT proteins and functions at the midbody in cytokinesis

Jeremy G. Carlton, C. Stewart, D. Raimondo, 2020, bioRxiv.

The DNA binding site of the Xenopus transcription factor IIIA has a non‐B‐form structure.

D. Rhodes, L. Fairall, S. Martin, 1989, The EMBO journal.

Atomic co-ordinates for yeast phenylalanine tRNA.

A Klug, J E Ladner, B. Clark, 1975, Nucleic acids research.

The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals.

D. Rhodes, S. Djordjević, L. Jovine, 2000, Journal of molecular biology.

A novel method for the purification of the Xenopus transcription factor IIIA.

D. Rhodes, L. Fairall, J. Miller, 1989, Nucleic Acids Research.

Correlation between three-dimensional structure and chemical reactivity of transfer RNA.

B. Clark, A. Klug, J. Finch, 1974, Nucleic acids research.

Stitched peptides as potential cell permeable inhibitors of oncogenic DAXX protein

A. Phan, C. Verma, S. Kannan, 2022, bioRxiv.

Chromatin structure: The nucleosome core all wrapped up

D. Rhodes, 1997, Nature.

Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation

D. Rhodes, G. Davey, P. Dyson, 2017, Nature Communications.

Title Nucleosome acidic patch-targeting binuclear rutheniumcompounds induce aberrant chromatin condensation

D. Rhodes, G. Davey, P. Dyson, 2019 .

Zinc fingers.

A. Klug, D. Rhodes, 1993, Scientific American.

Differential nucleosome positioning on Xenopus oocyte and somatic 5 S RNA genes determines both TFIIIA and H1 binding: a mechanism for selective H1 repression.

T. Richmond, D. Rhodes, A. Flaus, 1998, Journal of molecular biology.