Daniel Osório

发表

Single cell expression variability in highly homogeneous populations of human cells is widespread, heritable, and implies cell function

James J. Cai, E. Serpedin, Daniel Osório, 2019, bioRxiv.

Extent, Heritability, and Functional Relevance of Single Cell Expression Variability in Highly Homogeneous Populations of Human Cells

James J. Cai, E. Serpedin, Daniel Osório, 2019, SSRN Electronic Journal.

Single-Cell Expression Variability Implies Cell Function

James J. Cai, E. Serpedin, Daniel Osório, 2019, Cells.

scTenifoldNet: a machine learning workflow for constructing and comparing transcriptome-wide gene regulatory networks from single-cell data

James J. Cai, Daniel Osório, Yan Zhong, 2020, bioRxiv.

Overdispersed gene expression in schizophrenia

James J. Cai, Guoli Ji, Guangzao Huang, 2020, npj Schizophrenia.

Overdispersed gene expression characterizes schizophrenic brains

James J. Cai, Guoli Ji, Guangzao Huang, 2018, bioRxiv.

Single-cell RNA sequencing of a European and an African lymphoblastoid cell line

James J. Cai, E. Serpedin, Daniel Osório, 2019, bioRxiv.

scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data

James J. Cai, Daniel Osório, Yan Zhong, 2020, bioRxiv.

Ablation of long noncoding RNA MALAT1 activates antioxidant pathway and alleviates sepsis in mice

James J. Cai, G. Calin, Daniel Osório, 2022, Redox biology.

Multiple Pathways Involved in Palmitic Acid-Induced Toxicity: A System Biology Approach

Daniel Osório, A. Pinzón, G. Barreto, 2020, Frontiers in Neuroscience.

Stability Analysis of Antimicrobial Peptides in Solvation Conditions by Molecular Dynamics

Daniel Osório, P. Rondón-Villarreal, R. Torres, 2014 .

Gag‐like proteins: Novel mediators of prenatal alcohol exposure in neural development

E. A. Payne, James J. Cai, Daniel Osório, 2022, Alcoholism, clinical and experimental research.

Single-Cell Gene Regulatory Network Analysis Reveals Potential Mechanisms of Action of Antimalarials Against SARS-CoV-2

James J. Cai, Daniel Osório, 2020, ICCABS.

Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA sequencing data quality control

Daniel Osorio, James J. Cai, Daniel Osório, 2020, bioRxiv.

Drug combination prioritization for cancer treatment using single-cell RNA-seq based transfer learning

Nidhi Sahni, Daniel Osório, D. McGrail, 2022, bioRxiv.

Antecedent presentation of neurological phenotypes in the Collaborative Cross reveals four classes with complex sex-dependencies

James J. Cai, D. Threadgill, Daniel Osório, 2020, Scientific Reports.

scTenifoldKnk: a machine learning workflow performing virtual knockout experiments on single-cell gene regulatory networks

James J. Cai, Daniel Osório, Yan Zhong, 2021 .

Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures

V. Kristensen, Daniel Osório, M. Kuijjer, 2024, bioRxiv.

scInTime: A Computational Method Leveraging Single-Cell Trajectory and Gene Regulatory Networks to Identify Master Regulators of Cellular Differentiation

James J. Cai, Xiuren Zhang, Daniel Osório, 2022, Genes.

rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database

James J. Cai, Daniel Osório, M. Kuijjer, 2021, bioRxiv.

Single-cell RNA sequencing of a European and an African lymphoblastoid cell line

James J. Cai, E. Serpedin, Daniel Osório, 2019, Scientific data.

Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

Nidhi Sahni, S. Eckhardt, T. Pitts, 2023, bioRxiv.

Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme

J. Quackenbush, Daniel Osório, T. Belova, 2021, Cancer Research.

scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation

James J. Cai, Daniel Osório, Yan Zhong, 2022, bioRxiv.

Peptides: A Package for Data Mining of Antimicrobial Peptides

Rodrigo Torres, Daniel Osorio, Paola Rondón-Villarreal, 2015, R J..

Single-cell RNA Sequencing Reveals How the Aryl Hydrocarbon Receptor Shapes Cellular Differentiation Potency in the Mouse Colon

James J. Cai, A. Jayaraman, S. Safe, 2021, Cancer Prevention Research.

Genome sequencing of three bacteria associated to black band disease from a Colombian reef-building coral

Daniel Osório, A. Pinzón, Yina Cifuentes, 2016, Genomics data.

minval: An R package for MINimal VALidation of Stoichiometric Reactions

Andrés Pinzón, Daniel Osorio, Janneth Gonzalez, 2017, R J..

L-Type Calcium Channels Modulation by Estradiol

Daniel Osório, L. Garcia-Segura, V. Echeverria, 2016, Molecular Neurobiology.

Antecedent presentation of neurological phenotypes in the Collaborative Cross reveals four classes with complex sex-dependencies

James J. Cai, D. Threadgill, Daniel Osório, 2020, Scientific Reports.

g2f as a Novel Tool to Find and Fill Gaps in Metabolic Networks

Daniel Osório, G. Barreto, Janneth González, 2021, R J..

Paper-based diagnostics in the antigen-depletion regime: High-density immobilization of rcSso7d-cellulose-binding domain fusion proteins for efficient target capture.

Hadley D Sikes, Daniel Osorio, Daniel Osório, 2018, Biosensors & bioelectronics.

Single-cell RNA sequencing of a European and an African lymphoblastoid cell line

James J. Cai, E. Serpedin, Daniel Osório, 2019, Scientific Data.