P. Arndt

发表

CpG Deamination Creates Transcription Factor–Binding Sites with High Efficiency

G. Bourque, M. Vingron, S. Kiełbasa, 2011, Genome biology and evolution.

The information capacity of the genetic code: Is the natural code optimal?

E. Kuruoglu, P. Arndt, 2017, Journal of theoretical biology.

Genome-wide patterns and properties of de novo mutations in humans

Morris Swertz, Victor Guryev, Dorret I. Boomsma, 2015, Nature Genetics.

Transcription induces strand-specific mutations at the 5' end of human genes.

P. Polak, P. Arndt, 2008, Genome research.

Identification of highly specific localized sequence motifs in human ribosomal protein gene promoters.

Stefan Roepcke, M. Vingron, Degui Zhi, 2006, Gene.

The evolution of transcription-associated biases of mutations across vertebrates

P. Polak, P. Arndt, Robert Querfurth, 2010, BMC Evolutionary Biology.

Distribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7

P. Arndt, R. Ullmann, A. Lind-Thomsen, 2014, BMC Genomics.

Comparative promoter region analysis powered by CORG

Andrea Tanzer, P. Stadler, C. Dieterich, 2005, BMC Genomics.

First-Order Phase Transitions in One-Dimensional Steady States

Peter F. Arndt, Thomas Heinzel, P. Arndt, 1997 .

The Impact of Recombination on Nucleotide Substitutions in the Human Genome

Laurent Duret, Peter F. Arndt, L. Duret, 2008, PLoS genetics.

Reconstruction of ancestral nucleotide sequences and estimation of substitution frequencies in a star phylogeny.

P. Arndt, Peter F Arndt, 2007, Gene.

Substantial Regional Variation in Substitution Rates in the Human Genome: Importance of GC Content, Gene Density, and Telomere-Specific Effects

Terence Hwa, Peter F. Arndt, Dmitri A. Petrov, 2005, Journal of Molecular Evolution.

Distinct changes of genomic biases in nucleotide substitution at the time of Mammalian radiation.

Terence Hwa, Dmitri A Petrov, D. Petrov, 2003, Molecular biology and evolution.

Statistical Properties of Pairwise Distances between Leaves on a Random Yule Tree

M. Sheinman, P. Arndt, F. Massip, 2014, PloS one.

Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences

M. Sheinman, P. Arndt, F. Massip, 2016, Scientific Reports.

Comparing the Statistical Fate of Paralogous and Orthologous Sequences

S. Schbath, M. Sheinman, P. Arndt, 2016, bioRxiv.

Comparing the Statistical Fate of Paralogous and Orthologous Sequences

S. Schbath, M. Sheinman, P. Arndt, 2016, Genetics.

How Evolution of Genomes Is Reflected in Exact DNA Sequence Match Statistics

S. Schbath, M. Sheinman, P. Arndt, 2014, Molecular biology and evolution.

Meiotic recombination strongly influences GC-content evolution in short regions in the mouse genome.

Yves Clément, P. Arndt, 2013, Molecular biology and evolution.

Long identical sequences found in multiple bacterial genomes reveal frequent and widespread exchange of genetic material between distant species

R. Hermsen, M. Sheinman, B. Dutilh, 2020, bioRxiv.

Heating experiments simulating atmospheric entry heating of micrometeorites: Clues to their parent body sources

S. Bajt, G. Flynn, P. Arndt, 1998 .

Quantifying the stationarity and time reversibility of the nucleotide substitution process.

P. Arndt, Federico Squartini, 2008, Molecular biology and evolution.

Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity in humans

A. Eyre-Walker, P. Arndt, Thomas C A Smith, 2018, PLoS genetics.

Metastability and Spinodal Points for a Random Walker on a Triangle

P. Arndt, T. Heinzel, 1997, cond-mat/9710287.

Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells

M. Vingron, F. Müller, D. Rosebrock, 2022, Nature Cell Biology.

The history of mutation pattern in human: A statistical analysis of repetitive sequences

P. Arndt, 2003 .

First-Order Phase Transitions in One-Dimensional Steady States

P. Arndt, T. Heinzel, V. Rittenberg, 1997, cond-mat/9706114.

Spontaneous Breaking of Translational Invariance and Spatial Condensation in Stationary States on a Ring. II. The Charged System and the Two-Component Burgers Equations

P. Arndt, V. Rittenberg, 1998, cond-mat/0012480.

The elemental abundances in interplanetary dust particles

E. Jessberger, J. Bohsung, P. Arndt, 1996 .

LETTER TO THE EDITOR: Spontaneous breaking of translational invariance in one-dimensional stationary states on a ring

P. Arndt, T. Heinzel, V. Rittenberg, 1997, cond-mat/9708128.

Single‐cell based high‐throughput sequencing of full‐length immunoglobulin heavy and light chain genes

Irina Czogiel, Hedda Wardemann, Peter R. Braun, 2014, European journal of immunology.

Variation in the molecular clock of primates

P. Moorjani, M. Przeworski, P. Arndt, 2016, Proceedings of the National Academy of Sciences.

Tumor mutational landscape is a record of the pre-malignant state

Lincoln D. Stein, G. Getz, O. Elemento, 2019, bioRxiv.

Large scale variation in the rate of de novo mutation, base composition, divergence and diversity in humans

A. Eyre-Walker, P. Arndt, Thomas Smith, 2017, bioRxiv.

Quantification of GC-biased gene conversion in the human genome

Philipp W. Messer, D. Petrov, L. Duret, 2014, bioRxiv.

Substitution Patterns Are Under Different Influences in Primates and Rodents

Yves Clément, P. Arndt, 2011, Genome biology and evolution.

Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences.

D. Petrov, Nadia D. Singh, P. Arndt, 2006, BMC Biology.

Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila.

Andrew G Clark, A. Clark, Nadia D. Singh, 2009, Molecular biology and evolution.

Genomic Heterogeneity of Background Substitutional Patterns in Drosophila melanogaster

Dmitri A Petrov, D. Petrov, Nadia D. Singh, 2005, Genetics.

Male-driven biased gene conversion governs the evolution of base composition in human alu repeats.

Hans Ellegren, H. Ellegren, M. Webster, 2005, Molecular biology and evolution.

Identification and Measurement of Neigbor Dependent Nucleotide Substitution Processes

Peter F. Arndt, P. Arndt, 2005, German Conference on Bioinformatics.

Regional and Time-resolved Mutation Patterns of the Human Genome

Terence Hwa, Peter F. Arndt, T. Hwa, 2004, German Conference on Bioinformatics.

Evolutionary Consequences of DNA Methylation on the GC Content in Vertebrate Genomes

H. Ellegren, P. Arndt, C. Mugal, 2015, G3: Genes, Genomes, Genetics.

Germline Methylation Patterns Determine the Distribution of Recombination Events in the Dog Genome

M. Webster, P. Arndt, Javier Quilez, 2014, Genome biology and evolution.

Twisted Signatures of GC-Biased Gene Conversion Embedded in an Evolutionary Stable Karyotype

H. Ellegren, P. Arndt, C. Mugal, 2013, Molecular biology and evolution.

Long-Range Bidirectional Strand Asymmetries Originate at CpG Islands in the Human Genome

P. Polak, P. Arndt, 2009, Genome biology and evolution.

Modelling segmental duplications in the human genome

P. Arndt, Eldar T. Abdullaev, Iren R. Umarova, 2021, BMC Genomics.

The majority of recent short DNA insertions in the human genome are tandem duplications.

Philipp W. Messer, Philipp W Messer, P. Arndt, 2007, Molecular biology and evolution.

Widespread Chromosomal Losses and Mitochondrial DNA Alterations as Genetic Drivers in Hürthle Cell Carcinoma.

Samuel E. Donovan, G. Getz, V. Mootha, 2018, Cancer cell.

A Novel Method Distinguishes Between Mutation Rates and Fixation Biases in Patterns of Single-Nucleotide Substitution

D. Petrov, T. Hwa, P. Arndt, 2006, Journal of Molecular Evolution.

DNA sequence evolution with neighbor-dependent mutation

Christopher B. Burge, Terence Hwa, Peter F. Arndt, 2001, RECOMB '02.

Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics

Martin Vingron, Ralf Bundschuh, Philipp W. Messer, 2007, J. Comput. Biol..

Genetic alterations of HLA‐class II in ovarian cancer

E. Wardelmann, W. Kuhn, P. Arndt, 2008, International journal of cancer.

Universality of long-range correlations in expansion–randomization systems

Philipp W. Messer, Peter F. Arndt, Michael Lassig, 2005, q-bio/0509027.

Methylation and deamination of CpGs generate p53-binding sites on a genomic scale.

M. Vingron, Ho-Ryun Chung, S. Kiełbasa, 2009, Trends in genetics : TIG.

human genes end of ' Transcription induces strand-specific mutations at the 5

P. Polak, P. Arndt, 2009 .

DNA indels in coding regions reveal selective constraints on protein evolution in the human lineage

Philipp W Messer, P. Arndt, Peter F Arndt, 2007, BMC Evolutionary Biology.

Probing the SELEX Process with Next-Generation Sequencing

Zoltán Konthur, Hans Lehrach, Peter F. Arndt, 2011, PloS one.

A calibrated diversity assay for nucleic acid libraries using DiStRO—a Diversity Standard of Random Oligonucleotides

Martin Vingron, Hans Lehrach, Peter F. Arndt, 2009, Nucleic acids research.

Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain

R. Hermsen, M. Sheinman, B. Dutilh, 2021, eLife.

Editorial: Complexity in genomes

Wentian Li, Yannis Almirantis, Peter Arndt, 2014, Comput. Biol. Chem..

HLA‐class II haplotype associations with ovarian cancer

E. Wardelmann, W. Kuhn, P. Arndt, 2006, International journal of cancer.

CorGen—measuring and generating long-range correlations for DNA sequence analysis

Philipp W. Messer, Peter F. Arndt, P. Arndt, 2006, Nucleic Acids Res..

Neutral evolution of duplicated DNA: an evolutionary stick-breaking process causes scale-invariant behavior.

Florian Massip, P. Arndt, Peter F Arndt, 2013, Physical review letters.

Stochastic models on a ring and quadratic algebras. The three-species diffusion problem

P. Arndt, T. Heinzel, V. Rittenberg, 1997, cond-mat/9703182.

Preventing Dangerous Nonsense: Selection for Robustness to Transcriptional Error in Human Genes

H. R. Crollius, L. Duret, P. Arndt, 2011, PLoS genetics.

Numerical investigation of correlation functions for the UqSU(2) invariant spin-1/2 Heisenberg chain

P. Arndt, T. Heinzel, 1995, cond-mat/9501035.

Properties of Interplanetary Dust: Information from Collected Samples

Peter F. Arndt, John P. Bradley, Donald E. Brownlee, 2001 .

Pulse-heating of fragments from Orgueil (CI): simulation of atmospheric entry heating of micrometeorites

P. Arndt, A. Greshake, A. Bischoff, 1996 .

Temperley-Lieb words as valence-bond ground states

P. Arndt, T. Heinzel, C. Yung, 1994, cond-mat/9411085.

Directed percolation, fractal roots and the Lee–Yang theorem

H. Hinrichsen, P. Arndt, S. Dahmen, 2001 .

Spontaneous Breaking of Translational Invariance and Spatial Condensation in Stationary States on a Ring. I. The Neutral System

P. Arndt, T. Heinzel, V. Rittenberg, 1998, cond-mat/9809123.

High resolution PIXE analyses of interplanetary dust particles with the new Heidelberg proton microprobe

E. Jessberger, J. Bohsung, P. Arndt, 1995 .

On the accuracy of element concentrations and masses of micron sized samples determined with the Heidelberg proton microprobe

E. Jessberger, P. Arndt, M. Maetz, 1997 .

Accurate quantification resulting from precise beam monitoring and calibration

P. Arndt, T. Schneider, M. Maetz, 1997 .

Structural and chemical modifications of microsamples induced during PIXE analysis

E. Jessberger, P. Arndt, A. Greshake, 1996 .

The new Heidelberg proton microprobe: The success of a minimal concept

J. Bohsung, P. Arndt, M. Maetz, 1995 .

Bromine in Interplanetary Dust Particles

E. Jessberger, J. Bohsung, P. Arndt, 1994 .

Criterion for crack formation in disordered materials

P. Arndt, T. Nattermann, 2000, cond-mat/0012113.

Refractory Inclusions in the Kaidun Carbonaceous Chondrite Breccia

E. Jessberger, J. Bohsung, P. Arndt, 1994 .

Alignment Statistics for Long-Range Correlated Genomic Sequences

Martin Vingron, Ralf Bundschuh, Philipp W. Messer, 2006, RECOMB.

sciReptor: analysis of single-cell level immunoglobulin repertoires

H. Wardemann, P. Arndt, K. Imkeller, 2016, BMC Bioinformatics.

Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences.

D. Petrov, E. Rugarli, P. Arndt, 2006, BMC biology.

Sequential and continuous time stick-breaking

Peter F. Arndt, P. Arndt, 2019, Journal of Statistical Mechanics: Theory and Experiment.

Solvable sequence evolution models and genomic correlations.

Michael Lässig, Philipp W. Messer, Philipp W Messer, 2005, Physical review letters.

Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences

D. Petrov, P. Arndt, Nadia D Singh, 2006 .

The Isochore Structure of the Human Genome

T. Hwa, P. Arndt, D. Petrov, 2002 .