D. Bogenhagen

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The HMG‐box mitochondrial transcription factor xl‐mtTFA binds DNA as a tetramer to activate bidirectional transcription

I. Antoshechkin, I. Mastrangelo, D. Bogenhagen, 1997, The EMBO journal.

The number of mitochondrial deoxyribonucleic acid genomes in mouse L and human HeLa cells. Quantitative isolation of mitochondrial deoxyribonucleic acid.

D. A. Clayton, D. Bogenhagen, D. Clayton, 1974, The Journal of biological chemistry.

Xenopus transcription factor A requires zinc for binding to the 5 S RNA gene.

D. Hazuda, J. Hanas, C. Wu, 1983, The Journal of biological chemistry.

Protein Components of Mitochondrial DNA Nucleoids in Higher Eukaryotes*

R. Kobayashi, Ellen L. Shen, D. Bogenhagen, 2003, Molecular & Cellular Proteomics.

Mapping of the displacement loop within the nucleotide sequence of Xenopus laevis mitochondrial DNA.

S. S. Cairns, D. Bogenhagen, 1986, The Journal of biological chemistry.

The EM structure of human DNA polymerase γ reveals a localized contact between the catalytic and accessory subunits

J. Wall, C. Kisker, D. Bogenhagen, 2007, The EMBO journal.

Human Mitochondrial DNA Nucleoids Are Linked to Protein Folding Machinery and Metabolic Enzymes at the Mitochondrial Inner Membrane*

D. Bogenhagen, Yousong Wang, 2006, Journal of Biological Chemistry.

A quantitative proteomic analysis of mitochondrial participation in p19 cell neuronal differentiation.

S. Basu, D. Bogenhagen, J. Watkins, 2008, Journal of proteome research.

Proteolytic Activation of Monocyte Chemoattractant Protein-1 by Plasmin Underlies Excitotoxic Neurodegeneration in Mice

S. Tsirka, D. Bogenhagen, I. Gravanis, 2007, The Journal of Neuroscience.

Functional human mitochondrial DNA polymerase gamma forms a heterotrimer.

J. Carrodeguas, C. Kisker, D. Bogenhagen, 2006, The Journal of biological chemistry.

Extracellular Mitochondrial DNA Is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis

C. D. Dela Cruz, N. Kaminski, D. Bogenhagen, 2017, American journal of respiratory and critical care medicine.

Human DNA2 is a mitochondrial nuclease/helicase for efficient processing of DNA replication and repair intermediates and defective in myopathy

D. Bogenhagen, Zhigang Guo, Huiming Lu, 2008, Molecular cell.

Removal of Oxidative DNA Damage via FEN1-Dependent Long-Patch Base Excision Repair in Human Cell Mitochondria

David M. Wilson, V. Bohr, D. Bogenhagen, 2008, Molecular and Cellular Biology.

Concluding remarks: The mitochondrial DNA replication bubble has not burst.

D. A. Clayton, D. Bogenhagen, D. Clayton, 2003, Trends in biochemical sciences.

Pulse SILAC Approaches to the Measurement of Cellular Dynamics.

D. Bogenhagen, J. Haley, Daifeng Wang, 2019, Advances in experimental medicine and biology.

Mitochondrial Ribosomal RNA (rRNA) Methyltransferase Family Members Are Positioned to Modify Nascent rRNA in Foci near the Mitochondrial DNA Nucleoid*

D. Bogenhagen, Joseph F LaComb, Ken-Wing Lee, 2013, The Journal of Biological Chemistry.

Mechanism of mitochondrial DNA replication in mouse L-cells: introduction of superhelical turns into newly replicated molecules.

D. A. Clayton, D. Bogenhagen, D. Clayton, 1978, Journal of molecular biology.

The influence of the DNA polymerase gamma accessory subunit on base excision repair by the catalytic subunit.

D. Bogenhagen, K. Pinz, 2006, DNA repair.

Cloning and characterization of the gene for the somatic form of DNA topoisomerase I from Xenopus laevis.

R. Sternglanz, D. Bogenhagen, S. Pandit, 1996, Nucleic acids research.

The γ Subfamily of DNA Polymerases: Cloning of a Developmentally Regulated cDNA Encoding Xenopus Laevis Mitochondrial DNA Polymerase γ

J. Carrodeguas, D. Bogenhagen, F. Ye, 1996 .

Loss of Functional SCO2 Attenuates Oxidative Stress in Diabetic Kidney Disease.

D. Bogenhagen, J. He, M. Revelo, 2021, Diabetes.

The Complicated Role of Mitochondria in the Podocyte.

D. Bogenhagen, S. Mallipattu, Nehaben A. Gujarati, 2020, American journal of physiology. Renal physiology.

Repair of a synthetic abasic site involves concerted reactions of DNA synthesis followed by excision and ligation

D. Bogenhagen, Y. Matsumoto, 1991, Molecular and cellular biology.

Acetylaminofluorene and aminofluorene adducts inhibit in vitro transcription of a Xenopus 5S RNA gene only when located on the coding strand.

D. Bogenhagen, S. Shibutani, Y. Matsumoto, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Effects of DNA lesions on transcription elongation by T7 RNA polymerase.

D. Bogenhagen, Y. H. Chen, 1993, The Journal of biological chemistry.

Template sequences required for transcription of Xenopus laevis mitochondrial DNA from two bidirectional promoters

D. Bogenhagen, M. Romanelli, 1988, Molecular and cellular biology.

Mouse L cell mitochondrial DNA molecules are selected randomly for replication throughout the cell cycle

D. A. Clayton, D. Bogenhagen, D. Clayton, 1977, Cell.

Quantitation of type II topoisomerase in oocytes and eggs of Xenopus laevis.

M. Luke, D. Bogenhagen, 1989, Developmental biology.

The 165-kDa DNA topoisomerase I from Xenopus laevis oocytes is a tissue-specific variant.

D. Bogenhagen, R. Richard, 1991, Developmental biology.

Functional conservation of yeast mtTFB despite extensive sequence divergence.

D. A. Clayton, J. Carrodeguas, D. Bogenhagen, 1996, Gene expression.

Purification of mitochondria for enzymes involved in nucleic acid transactions.

D. Bogenhagen, 2002, Methods in molecular biology.

Effects of Xenopus laevis Mitochondrial Single-stranded DNA-binding Protein on Primer-Template Binding and 3′→5′ Exonuclease Activity of DNA Polymerase γ*

D. Bogenhagen, V. Mikhailov, 1996, The Journal of Biological Chemistry.

Repair of a synthetic abasic site in DNA in a Xenopus laevis oocyte extract

D. Bogenhagen, Y. Matsumoto, 1989, Molecular and cellular biology.

Proliferating cell nuclear antigen-dependent abasic site repair in Xenopus laevis oocytes: an alternative pathway of base excision DNA repair

D. Bogenhagen, Y. Matsumoto, K. Kim, 1994 .

Interaction of mtTFB and mtRNA polymerase at core promoters for transcription of Xenopus laevis mtDNA.

D. Bogenhagen, 1996, The Journal of biological chemistry.

Mitochondrial Genomes in Vertebrate Animals

D. Bogenhagen, 2014 .

Accurate in vitro transcription of Xenopus laevis mitochondrial DNA from two bidirectional promoters

D. Bogenhagen, B. Yoza, 1986, Molecular and cellular biology.

The Layered Structure of Human Mitochondrial DNA Nucleoids*

D. Rousseau, D. Bogenhagen, S. Burke, 2008, Journal of Biological Chemistry.

Stable transcription complexes of Xenopus 5S RNA genes: A means to maintain the differentiated state

D. Bogenhagen, Donald D. Brown, W. Wormington, 1982, Cell.

A control region in the center of the 5S RNA gene directs specific initiation of transcription: I. The 5′ border of the region

D. Bogenhagen, Donald D. Brown, S. Sakonju, 1980, Cell.

A control region in the center of the 5S RNA gene directs specific initiation of transcription: II. The 3′ border of the region

D. Bogenhagen, Donald D. Brown, S. Sakonju, 1980, Cell.

Mechanism of mitochondrial DNA replication in mouse L-cells. Replication of unicircular dimer molecules.

D. A. Clayton, D. Bogenhagen, C. Lowell, 1981, Journal of molecular biology.

Characterization of a Catalytically Slow AP Lyase Activity in DNA Polymerase γ and Other Family A DNA Polymerases*

D. Bogenhagen, K. Pinz, 2000, The Journal of Biological Chemistry.

The Action of DNA Ligase at Abasic Sites in DNA*

D. Bogenhagen, K. Pinz, 1998, The Journal of Biological Chemistry.

Thymidylate nucleotide supply for mitochondrial DNA synthesis in mouse L-cells. Effect of 5-fluorodeoxyuridine and methotrexate in thymidine kinase plus and thymidine kinase minus cells.

D. Bogenhagen, D. Clayton, 1976, The Journal of biological chemistry.

DNA polymerase gamma from Xenopus laevis. I. The identification of a high molecular weight catalytic subunit by a novel DNA polymerase photolabeling procedure.

D. Bogenhagen, N. F. Insdorf, 1989, The Journal of biological chemistry.

Nucleotide sequences in Xenopus 5S DNA required for transcription termination

D. Bogenhagen, Donald D. Brown, 1981, Cell.

Repair of mtDNA in vertebrates.

D. Bogenhagen, 1999, American journal of human genetics.

Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease.

D. Temiakov, D. Bogenhagen, Xiaobo Nie, 2013, Molecular cell.

Mitochondrial DNA nucleoid structure.

D. Bogenhagen, 2012, Biochimica et biophysica acta.

Developmentally-regulated packaging of mitochondrial DNA by the HMG-box protein mtTFA during Xenopus oogenesis

Ellen L. Shen, Daniel F. Bogenhagen, Ellen L. Shen, 2001, Nucleic Acids Res..

Podocyte-Specific Loss of Krüppel-Like Factor 6 Increases Mitochondrial Injury in Diabetic Kidney Disease

V. Yang, D. Bogenhagen, J. He, 2018, Diabetes.

Identification of a promoter for transcription of the heavy strand of human mtDNA: In vitro transcription and deletion mutagenesis

D. Bogenhagen, B. Yoza, Enid F. Applegate, 1984, Cell.

Clusters of point mutations are found exclusively around rearranged antibody variable genes.

D. Bogenhagen, P. Gearhart, P J Gearhart, 1983, Proceedings of the National Academy of Sciences of the United States of America.

Purified RNA polymerase III accurately and efficiently terminates transcription of 5s RNA genes

N. Cozzarelli, M. Schlissel, D. Bogenhagen, 1983, Cell.

Mitochondrial genetic variation is enriched in G-quadruplex regions that stall DNA synthesis in vitro.

Thomas J. Butler, A. Moore, S. Bandinelli, 2020, Human molecular genetics.

MiGenes: a searchable interspecies database of mitochondrial proteins curated using gene ontology annotation

Chun Zhou, Siddhartha Basu, Erich Bremer, 2006, Bioinform..

TFIIIA binds with equal affinity to somatic and major oocyte 5S RNA genes.

G. McConkey, D. Bogenhagen, 1988, Genes & development.

Crystal Structure and Deletion Analysis Show that the Accessory Subunit of Mammalian DNA Polymerase γ, PolγB, Functions as a Homodimer

J. Carrodeguas, C. Kisker, D. Bogenhagen, 2001 .

Crystal structure and deletion analysis show that the accessory subunit of mammalian DNA polymerase gamma, Pol gamma B, functions as a homodimer.

J. Carrodeguas, C. Kisker, D. Bogenhagen, 2001, Molecular cell.

Kinetics and Mechanism of Mammalian Mitochondrial Ribosome Assembly.

M. García-Díaz, D. Bogenhagen, J. Haley, 2018, Cell reports.

Superresolution Fluorescence Imaging of Mitochondrial Nucleoids Reveals Their Spatial Range, Limits, and Membrane Interaction

Harald F Hess, Ariana N Tkachuk, H. Hess, 2011, Molecular and Cellular Biology.

The mitochondrial DNA replication bubble has not burst.

D. Bogenhagen, D. Clayton, 2003, Trends in biochemical sciences.

Proteolytic footprinting of transcription factor TFIIIA reveals different tightly binding sites for 5S RNA and 5S DNA

D. Bogenhagen, 1993, Molecular and cellular biology.

Identification of initiation sites for transcription of Xenopus laevis mitochondrial DNA.

S. S. Cairns, D. Bogenhagen, B. Yoza, 1986, The Journal of biological chemistry.

Identification and in vitro capping of a primary transcript of human mitochondrial DNA.

D. Bogenhagen, B. Yoza, 1984, The Journal of biological chemistry.

DNA REPAIR '99 Repair of mtDNA in Vertebrates

D. Bogenhagen, 1999 .

Does mtDNA nucleoid organization impact aging?

D. Bogenhagen, 2010, Experimental Gerontology.

Scalable Isolation of Mammalian Mitochondria for Nucleic Acid and Nucleoid Analysis.

D. Bogenhagen, Ken-Wing Lee, 2016, Methods in molecular biology.

Binding of TFIIIA to derivatives of 5S RNA containing sequence substitutions or deletions defines a minimal TFIIIA binding site.

D. Bogenhagen, M. Sands, 1992, Nucleic acids research.

Two zinc finger proteins from Xenopus laevis bind the same region of 5S RNA but with different nuclease protection patterns.

D. Bogenhagen, M. Sands, 1991, Nucleic acids research.

The carboxyterminal zinc fingers of TFIIIA interact with the tip of helix V of 5S RNA in the 7S ribonucleoprotein particle.

D. Bogenhagen, M. Sands, 1991, Nucleic acids research.

A high molecular weight topoisomerase I from Xenopus laevis ovaries.

D. Bogenhagen, R. Richard, 1989, The Journal of biological chemistry.

Mechanism of mitochondrial DNA replication in mouse L-cells: kinetics of synthesis and turnover of the initiation sequence.

D. Bogenhagen, D. Clayton, 1978, Journal of molecular biology.

Two Forms of Mitochondrial DNA Ligase III Are Produced inXenopus laevis Oocytes*

Seth M. Klein, D. Bogenhagen, S. M. Klein, 2001, The Journal of Biological Chemistry.

TFIIIA binds to different domains of 5S RNA and the Xenopus borealis 5S RNA gene

D. Bogenhagen, M. Sands, 1987, Molecular and cellular biology.

Efficient Repair of Abasic Sites in DNA by Mitochondrial Enzymes

D. Bogenhagen, K. Pinz, 1998, Molecular and Cellular Biology.

Protein sequences conserved in prokaryotic aminoacyl-tRNA synthetases are important for the activity of the processivity factor of human mitochondrial DNA polymerase.

J. Carrodeguas, D. Bogenhagen, 2000, Nucleic acids research.

Enzymology of mitochondrial base excision repair.

D. Bogenhagen, K. Pinz, R. M. Perez-Jannotti, 2001, Progress in nucleic acid research and molecular biology.

Purification of Xenopus laevis mitochondrial RNA polymerase and identification of a dissociable factor required for specific transcription

D. Bogenhagen, N. F. Insdorf, 1988, Molecular and cellular biology.

The Accessory Subunit of Xenopus laevis Mitochondrial DNA Polymerase γ Increases Processivity of the Catalytic Subunit of Human DNA Polymerase γ and Is Related to Class II Aminoacyl-tRNA Synthetases

R. Kobayashi, J. Carrodeguas, D. Bogenhagen, 1999, Molecular and Cellular Biology.

Proliferating cell nuclear antigen-dependent abasic site repair in Xenopus laevis oocytes: an alternative pathway of base excision DNA repair.

Yoshihiro, D. Bogenhagen, Y. Matsumoto, 1994, Molecular and cellular biology.

Assignment of 2′-O-Methyltransferases to Modification Sites on the Mammalian Mitochondrial Large Subunit 16 S Ribosomal RNA (rRNA)*

D. Bogenhagen, Ken-Wing Lee, 2014, The Journal of Biological Chemistry.

Initial steps in RNA processing and ribosome assembly occur at mitochondrial DNA nucleoids.

A. Koller, D. Bogenhagen, D. Martin, 2014, Cell metabolism.

Distinct roles for two purified factors in transcription of Xenopus mitochondrial DNA

I. Antoshechkin, D. Bogenhagen, Igor Antoshechkin, 1995, Molecular and cellular biology.

A549 cells contain enlarged mitochondria with independently functional clustered mtDNA nucleoids

M. García-Díaz, D. Bogenhagen, Aleksandrs Nasonovs, 2021, PloS one.

Functional Human Mitochondrial DNA Polymerase γ Forms a Heterotrimer*

Daniel F. Bogenhagen, J. Carrodeguas, C. Kisker, 2006, Journal of Biological Chemistry.

The gamma subfamily of DNA polymerases: cloning of a developmentally regulated cDNA encoding Xenopus laevis mitochondrial DNA polymerase gamma.

J. Carrodeguas, D. Bogenhagen, F. Ye, 1996, Nucleic acids research.

Action of Mitochondrial DNA Polymerase at Sites of Base Loss or Oxidative Damage (*)

D. Bogenhagen, S. Shibutani, K. Pinz, 1995, The Journal of Biological Chemistry.

DNA polymerase gamma from Xenopus laevis. II. A 3'----5' exonuclease is tightly associated with the DNA polymerase activity.

D. Bogenhagen, N. F. Insdorf, 1989, The Journal of biological chemistry.

DNA Binding Properties of Human pol γB*

J. Carrodeguas, D. Bogenhagen, K. Pinz, 2002, The Journal of Biological Chemistry.

Mitochondrial DNA Repair in Mammals

D. Bogenhagen, 2006 .

DNA binding properties of human pol gammaB.

J. Carrodeguas, D. Bogenhagen, K. Pinz, 2002, The Journal of biological chemistry.

Pulse-chase SILAC–based analyses reveal selective oversynthesis and rapid turnover of mitochondrial protein components of respiratory complexes

D. Bogenhagen, J. Haley, 2020, The Journal of Biological Chemistry.

Selective over-synthesis and rapid turnover of mitochondrial protein components of respiratory complexes

D. Bogenhagen, 2019, bioRxiv.

Replication of mouse L-cell mitochondrial DNA.

D. Bogenhagen, A. Gillum, D. Clayton, 1979, Cold Spring Harbor symposia on quantitative biology.

DNA unwinding ability of Xenopus transcription factor A.

J. Hanas, C. Wu, D. Bogenhagen, 1984, Nucleic acids research.

Joseph near the Mitochondrial DNA Nucleoid Positioned to Modify Nascent rRNA in Foci Methyltransferase Family Members Are Mitochondrial Ribosomal RNA ( rRNA )

D. Bogenhagen, Joseph F LaComb, Ken-Wing Lee, 2013 .

A quantitative assay for Xenopus 5S RNA gene transcription in vitro

D. Bogenhagen, Donald D. Brown, E. Jordan, 1981, Cell.

Binding of Xenopus transcription factor A to 5S RNA and to single stranded DNA.

J. Hanas, C. Wu, D. Bogenhagen, 1984, Nucleic acids research.

Transition mutations within the Xenopus borealis somatic 5S RNA gene can have independent effects on transcription and TFIIIA binding

G. McConkey, D. Bogenhagen, 1987, Molecular and cellular biology.

S1 nuclease-specific nicking of mitochondrial DNA containing displacement loops.

D. Bogenhagen, C. Lowell, D. Clayton, 1978, Analytical biochemistry.

Cooperative model for the binding of Xenopus transcription factor A to the 5S RNA gene.

J. Hanas, C. Wu, D. Bogenhagen, 1983, Proceedings of the National Academy of Sciences of the United States of America.

Biochemical isolation of mtDNA nucleoids from animal cells.

D. Bogenhagen, 2009, Methods in molecular biology.

The intragenic control region of the Xenopus 5 S RNA gene contains two factor A binding domains that must be aligned properly for efficient transcription initiation.

D. Bogenhagen, 1985, The Journal of biological chemistry.

Podocyte-Specific Loss of Krüppel-Like Factor 6 Increases Mitochondrial Injury in Diabetic Kidney Disease

V. Yang, D. Bogenhagen, J. He, 2018, Diabetes.

Superresolution Fluorescence Imaging of Mitochondrial Nucleoids Reveals Their Spatial Range, Limits, and Membrane Interaction

H. Hess, T. Brown, B. G. Kopek, 2011, Molecular and Cellular Biology.

Initial steps in RNA processing and ribosome assembly occur at mitochondrial DNA nucleoids.

A. Koller, D. Bogenhagen, D. Martin, 2014, Cell metabolism.

The Layered Structure of Human Mitochondrial

D. Rousseau, D. Bogenhagen, S. Burke, 2008 .

Termination within Oligo(dT) Tracts in Template DNA by DNA Polymerase γ Occurs with Formation of a DNA Triplex Structure and Is Relieved by Mitochondrial Single-stranded DNA-binding Protein*

D. Bogenhagen, V. Mikhailov, Daniel F. Bogenhagen, 1996, The Journal of Biological Chemistry.