V. Iconomidou

发表

Visualization and analysis of the interaction network of proteins associated with blood-cell targeting autoimmune diseases.

Katerina C. Nastou, A. Amanatidou, O. Tsitsilonis, 2020, Biochimica et biophysica acta. Molecular basis of disease.

AmyCo: the amyloidoses collection

Katerina C. Nastou, V. Iconomidou, G. I. Nasi, 2019, Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis.

The BLAD Interactome: Visualization and Analysis of the Interaction Network of Proteins Associated with Blood-cell targeting Autoimmune Diseases

Katerina C. Nastou, A. Amanatidou, O. Tsitsilonis, 2019, bioRxiv.

AmyCo: the Amyloidoses Collection

Zoi I. Litou, Katerina C. Nastou, V. Iconomidou, 2018, bioRxiv.

INSECT MOLECULAR BIOLOGY AND BIOCHEMISTRY INSECT MOLECULAR BIOLOGY AND BIOCHEMISTRY

L. Gilbert, S. Hamodrakas, J. Willis, 2011 .

Investigation of the interaction of DAD1-LIKE LIPASE 3 (DALL3) with Selenium Binding Protein 1 (SBP1) in Arabidopsis thaliana.

H. Spaink, V. Iconomidou, A. Roussis, 2020, Plant science : an international journal of experimental plant biology.

Analysis of Single Nucleotide Polymorphisms in human Voltage-Gated Ion Channels

Zoi I. Litou, Katerina C. Nastou, S. Hamodrakas, 2018, bioRxiv.

Identification of an amyloid fibril forming segment of human Pmel17 repeat domain (RPT domain)

Nikolaos N. Louros, V. Iconomidou, 2016, Biopolymers.

Intrinsic aggregation propensity of the CsgB nucleator protein is crucial for curli fiber formation.

Nikolaos N. Louros, S. Hamodrakas, V. Iconomidou, 2016, Journal of structural biology.

Chameleon 'aggregation-prone' segments of apoA-I: A model of amyloid fibrils formed in apoA-I amyloidosis.

Nikolaos N. Louros, S. Hamodrakas, V. Iconomidou, 2015, International journal of biological macromolecules.

Extended Human G-Protein Coupled Receptor Network: Cell-Type-Specific Analysis of G-Protein Coupled Receptor Signaling Pathways

Fotis A. Baltoumas, Vassiliki A. Iconomidou, D. Stravopodis, 2020 .

Dogfish egg case structural studies by ATR FT-IR and FT-Raman spectroscopy.

Stavros J Hamodrakas, Vassiliki A Iconomidou, Persefoni Megalofonou, 2007, International journal of biological macromolecules.

Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences.

S. Hamodrakas, J. Willis, V. Iconomidou, 2007, Insect biochemistry and molecular biology.

Tracking the amyloidogenic core of IAPP amyloid fibrils: Insights from micro-Raman spectroscopy.

Nikolaos N. Louros, Fotis A. Baltoumas, S. Hamodrakas, 2017, Journal of structural biology.

Gene-Specific Intron Retention Serves as Molecular Signature that Distinguishes Melanoma from Non-Melanoma Cancer Cells in Greek Patients

A. Papavassiliou, A. Scorilas, Eumorphia G Konstantakou, 2019, International journal of molecular sciences.

Mining databases for protein aggregation: a review

Katerina C. Nastou, S. Hamodrakas, V. Iconomidou, 2017, Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis.

LepChorionDB, a database of Lepidopteran chorion proteins and a set of tools useful for the identification of chorion proteins in Lepidopteran proteomes.

S. Hamodrakas, I. Michalopoulos, V. Iconomidou, 2013, Insect biochemistry and molecular biology.

PerMemDB: a database for eukaryotic peripheral membrane proteins

Katerina C. Nastou, V. Iconomidou, G. Tsaousis, 2019, bioRxiv.

PerMemDB: A database for eukaryotic peripheral membrane proteins.

Katerina C. Nastou, V. Iconomidou, G. Tsaousis, 2020, Biochimica et biophysica acta. Biomembranes.

A common ‘aggregation‐prone’ interface possibly participates in the self‐assembly of human zona pellucida proteins

Nikolaos N. Louros, S. Hamodrakas, V. Iconomidou, 2016, FEBS letters.

Hexapeptide Tandem Repeats Dictate the Formation of Silkmoth Chorion, a Natural Protective Amyloid.

Nikolaos N. Louros, V. Iconomidou, Paraskevi L. Tsiolaki, 2018, Journal of molecular biology.

Approaches in Gene Coexpression Analysis in Eukaryotes

I. Michalopoulos, V. Iconomidou, A. Malatras, 2022, Biology.

ANTISOMA: A Computational Pipeline for the Reduction of the Aggregation Propensity of Monoclonal Antibodies.

Katerina C. Nastou, S. Hamodrakas, I. Maglogiannis, 2020, Advances in experimental medicine and biology.

SARS-CoV-2 Amino Acid Mutations Detection in Greek Patients Infected in the First Wave of the Pandemic

V. Iconomidou, N. Papandreou, K. Papadimitriou, 2022, Microorganisms.

LiGIoNs: A Computational Method for the Detection and Classification of Ligand-Gated Ion Channels

Zoi I. Litou, Katerina C. Nastou, V. Iconomidou, 2019, bioRxiv.

An amyloidogenic determinant in N-terminal pro-brain natriuretic peptide (NT-proBNP): Implications for cardiac amyloidoses.

S. Hamodrakas, A. Hoenger, V. Iconomidou, 2012, Biopolymers.

SARS-CoV-2 Neutralizing Antibodies Kinetics Postvaccination in Cancer Patients under Treatment with Immune Checkpoint Inhibition

M. Dimopoulos, I. Trougakos, V. Iconomidou, 2022, Cancers.

Erratum to “Drosophila cuticular proteins with the R&R consensus: Annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences” [Insect Biochem. Mol. Biol. 37 (2007) 754–760]

S. Hamodrakas, J. Willis, V. Iconomidou, 2008 .

COVID-19 BNT162b2 mRNA vaccine for patients with type 2 diabetes mellitus

T. Psaltopoulou, I. Trougakos, V. Iconomidou, 2022, Hormones.

Patients with type 2 diabetes mellitus present similar immunological response to COVID-19 BNT162b2 mRNA vaccine to healthy subjects: a prospective cohort study

T. Psaltopoulou, I. Trougakos, V. Iconomidou, 2022, Hormones.

NucEnvDB: A Database of Nuclear Envelope Proteins and Their Interactions

Zoi I. Litou, Fotis A. Baltoumas, V. Iconomidou, 2023, Membranes.

From Proteomic Mapping to Invasion-Metastasis-Cascade Systemic Biomarkering and Targeted Drugging of Mutant BRAF-Dependent Human Cutaneous Melanomagenesis

Eumorphia G Konstantakou, G. Voutsinas, D. Stravopodis, 2021, Cancers.

A structural model of the chitin-binding domain of cuticle proteins.

Stavros J Hamodrakas, Vassiliki A Iconomidou, S. Hamodrakas, 2002, Insect biochemistry and molecular biology.

Is beta-pleated sheet the molecular conformation which dictates formation of helicoidal cuticle?

S. Hamodrakas, J. Willis, V. Iconomidou, 1999, Insect biochemistry and molecular biology.

Delving into the amyloidogenic core of human leukocyte chemotactic factor 2.

Fotis A. Baltoumas, V. Iconomidou, G. I. Nasi, 2019, Journal of structural biology.

αCGRP, another amyloidogenic member of the CGRP family.

Nikolaos N. Louros, Fotis A. Baltoumas, S. Hamodrakas, 2018, Journal of structural biology.

Exploring the 'aggregation-prone' core of human Cystatin C: A structural study.

Stavros J Hamodrakas, Nikolaos N. Louros, Vassiliki A Iconomidou, 2015, Journal of structural biology.

Arabidopsis thaliana Plant Natriuretic Peptide Active Domain Forms Amyloid-like Fibrils in a pH-Dependent Manner

Nikolaos N. Louros, I. Trougakos, V. Iconomidou, 2021, Plants.

Structural Analysis of Peptide-Analogues of Human Zona Pellucida ZP1 Protein with Amyloidogenic Properties: Insights into Mammalian Zona Pellucida Formation

Stavros J. Hamodrakas, Nikolaos N. Louros, Vassiliki A. Iconomidou, 2013, PloS one.

Prothymosin alpha immunoactive carboxyl-terminal peptide TKKQKTDEDD stimulates lymphocyte reactions, induces dendritic cell maturation and adopts a beta-sheet conformation in a sequence-specific manner.

S. Hamodrakas, G. Pawelec, O. Tsitsilonis, 2009, Molecular immunology.

Revisiting Histone Deacetylases in Human Tumorigenesis: The Paradigm of Urothelial Bladder Cancer

A. Scorilas, Eumorphia G Konstantakou, G. Voutsinas, 2019, International journal of molecular sciences.

HGCA2.0: An RNA-Seq Based Webtool for Gene Coexpression Analysis in Homo sapiens

I. Michalopoulos, V. Iconomidou, A. Malatras, 2023, Cells.

Targeting of copper-trafficking chaperones causes gene-specific systemic pathology in Drosophila melanogaster: prospective expansion of mutational landscapes that regulate tumor resistance to cisplatin

Eumorphia G Konstantakou, D. Stravopodis, V. Iconomidou, 2019, Biology Open.

Exploring the conservation of Alzheimer-related pathways between H. sapiens and C. elegans: a network alignment approach

Katerina C. Nastou, V. Iconomidou, G. I. Nasi, 2021, Scientific Reports.

Hidden Aggregation Hot-Spots on Human Apolipoprotein E: A Structural Study

Nikolaos N. Louros, Fotis A. Baltoumas, V. Iconomidou, 2019, International journal of molecular sciences.

A Consensus Method for the Prediction of ‘Aggregation-Prone’ Peptides in Globular Proteins

Stavros J. Hamodrakas, Vassiliki A. Iconomidou, S. Hamodrakas, 2013, PloS one.

Identification of a novel ‘aggregation‐prone’/‘amyloidogenic determinant’ peptide in the sequence of the highly amyloidogenic human calcitonin

Andreas Hoenger, Stavros J Hamodrakas, Vassiliki A Iconomidou, 2013, FEBS letters.

Proteome-Wide Detection and Annotation of Receptor Tyrosine Kinases (RTKs): RTK-PRED and the TyReK Database

Fotis A. Baltoumas, V. Iconomidou, Z. Litou, 2023, Biomolecules.

Linear B-Cell Epitope Prediction for In Silico Vaccine Design: A Performance Review of Methods Available via Command-Line Interface

Kosmas A. Galanis, Katerina C. Nastou, V. Iconomidou, 2019, International journal of molecular sciences.

"Soft"-cuticle protein secondary structure as revealed by FT-Raman, ATR FT-IR and CD spectroscopy.

S. Hamodrakas, J. Willis, V. Gionis, 2001, Insect biochemistry and molecular biology.

Unraveling the aggregation propensity of human insulin C‐peptide

Nikolaos N. Louros, S. Hamodrakas, V. Iconomidou, 2017, Biopolymers.

The SAH7 Homologue of the Allergen Ole e 1 Interacts with the Putative Stress Sensor SBP1 (Selenium-Binding Protein 1) in Arabidopsis thaliana

V. Iconomidou, A. Roussis, K. Haralampidis, 2023, International journal of molecular sciences.

A β-solenoid model of the Pmel17 repeat domain: insights to the formation of functional amyloid fibrils

Stavros J. Hamodrakas, Nikolaos N. Louros, Fotis A. Baltoumas, 2016, Journal of Computer-Aided Molecular Design.

Novel interactions of Selenium Binding Protein family with the PICOT containing proteins AtGRXS14 and AtGRXS16 in Arabidopsis thaliana.

H. Spaink, V. Iconomidou, A. Roussis, 2019, Plant science : an international journal of experimental plant biology.

LiGIoNs: A Computational Method for the Detection and Classification of Ligand-Gated Ion Channels

Zoi I. Litou, Vassiliki A. Iconomidou, Katerina C. Nastou, 2019, bioRxiv.

Linear B-cell epitope prediction: a performance review of currently available methods

Vassiliki A. Iconomidou, Kosmas A. Galanis, Katerina C. Nastou, 2019, bioRxiv.

SARS‐CoV‐2 humoral responses following booster BNT162b2 vaccination in patients with B‐cell malignancies

I. Trougakos, V. Iconomidou, A. Sklirou, 2022, American journal of hematology.

Amyloids protect the silkmoth oocyte and embryo

G. Vriend, S. Hamodrakas, V. Iconomidou, 2000, FEBS letters.

Second Booster BNT162b2 Restores SARS-CoV-2 Humoral Response in Patients With Multiple Myeloma, Excluding Those Under Anti-BCMA Therapy

M. Dimopoulos, I. Trougakos, V. Iconomidou, 2022, HemaSphere.

Structural studies of “aggregation‐prone” peptide‐analogues of teleostean egg chorion ZPB proteins

Nikolaos N. Louros, S. Hamodrakas, V. Iconomidou, 2014, Biopolymers.

An N‐terminal pro‐atrial natriuretic peptide (NT‐proANP) ‘aggregation‐prone’ segment involved in isolated atrial amyloidosis

Nikolaos N. Louros, S. Hamodrakas, V. Iconomidou, 2014, FEBS letters.

Amyloid fibril formation propensity is inherent into the hexapeptide tandemly repeating sequence of the central domain of silkmoth chorion proteins of the A-family.

Andreas Hoenger, Stavros J Hamodrakas, Vassiliki A Iconomidou, 2006, Journal of structural biology.

Amyloid fibrillogenesis of silkmoth chorion protein peptide-analogues via a liquid-crystalline intermediate phase.

S. Hamodrakas, A. Hoenger, V. Iconomidou, 2004, Journal of structural biology.

Amyloid‐like fibrils from an 18‐residue peptide analogue of a part of the central domain of the B‐family of silkmoth chorion proteins

G. Vriend, S. Hamodrakas, A. Hoenger, 2001, FEBS letters.

The pentapeptide LQVVR plays a pivotal role in human cystatin C fibrillization

Stavros J Hamodrakas, Vassiliki A Iconomidou, S. Hamodrakas, 2015, FEBS letters.

Clusterin in Alzheimer’s disease: an amyloidogenic inhibitor of amyloid formation

A. Hoenger, I. Trougakos, V. Iconomidou, 2021, bioRxiv.

cuticleDB: a relational database of Arthropod cuticular proteins

Stavros J. Hamodrakas, Ioannis C. Spyropoulos, Vassiliki A. Iconomidou, 2004, BMC Bioinformatics.

Amyloidogenic determinants are usually not buried

S. Hamodrakas, V. Iconomidou, Kimon Frousios, 2009, BMC Structural Biology.

Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins.

Stavros J Hamodrakas, Vassiliki A Iconomidou, S. Hamodrakas, 2007, International journal of biological macromolecules.

Unique features of the structural model of 'hard' cuticle proteins: implications for chitin-protein interactions and cross-linking in cuticle.

S. Hamodrakas, J. Willis, V. Iconomidou, 2005, Insect biochemistry and molecular biology.

Secondary structure of chorion proteins of the Lepidoptera Pericallia ricini and Ariadne merione by ATR FT-IR and micro-Raman spectroscopy.

S. Hamodrakas, V. Gionis, G. Chryssikos, 2011, International journal of biological macromolecules.

Third dose of the BNT162b2 vaccine results in very high levels of neutralizing antibodies against SARS‐CoV‐2: Results of a prospective study in 150 health professionals in Greece

M. Dimopoulos, I. Papassotiriou, I. Trougakos, 2022, American journal of hematology.

Structural studies and cytotoxicity assays of “aggregation‐prone” IAPP8–16 and its non‐amyloidogenic variants suggest its important role in fibrillogenesis and cytotoxicity of human amylin

Nikolaos N. Louros, S. Hamodrakas, I. Trougakos, 2015, Biopolymers.

The silkmoth eggshell as a natural amyloid shield for the safe development of insect oocyte and embryo: Insights from studies of silkmoth chorion protein peptide‐analogues of the B famil

S. Hamodrakas, A. Hoenger, V. Iconomidou, 2011, Biopolymers.

The extended human GPCR network (hGPCRnet): cell-type-specific analysis of GPCR signaling pathways.

Fotis A. Baltoumas, D. Stravopodis, V. Iconomidou, 2019, Journal of proteome research.

The gram‐negative outer membrane modeler: Automated building of lipopolysaccharide‐rich bacterial outer membranes in four force fields

Stavros J Hamodrakas, Fotis A. Baltoumas, Fotis A Baltoumas, 2019, J. Comput. Chem..

Analysis of Single Nucleotide Polymorphisms in human Voltage-Gated Ion Channels

Zoi I. Litou, Katerina C. Nastou, S. Hamodrakas, 2018, bioRxiv.

A possible structural model of members of the CPF family of cuticular proteins implicating binding to components other than chitin.

S. Hamodrakas, J. Willis, V. Iconomidou, 2010, Journal of insect physiology.

Secondary structure of chorion proteins of the teleostean fish Dentex dentex by ATR FT-IR and FT-Raman spectroscopy.

S. Hamodrakas, V. Gionis, V. Iconomidou, 2000, Journal of structural biology.

FT-Raman spectroscopy as diagnostic tool of Congo red binding to amyloids.

Andreas Hoenger, Stavros J Hamodrakas, Vassiliki A Iconomidou, 2003, Biopolymers.

The amyloid interactome: Exploring protein aggregation

Katerina C. Nastou, S. Hamodrakas, V. Iconomidou, 2017, PloS one.

The amyloid interactome 2: mapping protein aggregation

Katerina C. Nastou, V. Iconomidou, Paraskevi L. Tsiolaki, 2019, Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis.

Bacterial Lectin FimH and Its Aggregation Hot-Spots: An Alternative Strategy against Uropathogenic Escherichia coli

V. Iconomidou, G. I. Nasi, Paraskevi L. Tsiolaki, 2023, Pharmaceutics.

Natural protective amyloids.

Stavros J Hamodrakas, Vassiliki A Iconomidou, S. Hamodrakas, 2008, Current protein & peptide science.

Exploring Amyloidogenicity of Clusterin: A Structural and Bioinformatics Analysis.

Nikolaos N. Louros, Katerina C. Nastou, S. Hamodrakas, 2017, Advances in experimental medicine and biology.

Amyloidogenic determinants are usually not buried.

S. Hamodrakas, V. Iconomidou, Kimon Frousios, 2009 .

Does subclinical hypercortisolism adversely affect the bone mineral density of patients with adrenal incidentalomas?

V. Iconomidou, S. Raptis, S. Tsagarakis, 2003, Clinical endocrinology.

A Multilevel Study of Eupatorin and Scutellarein as Anti-Amyloid Agents in Alzheimer’s Disease

N. Chondrogianni, V. Iconomidou, G. I. Nasi, 2023, Biomedicines.