P. Tang

发表

VAReporter: variant reporter for cancer research of massive parallel sequencing

C. Chiu, Po-Jung Huang, Chi-Ching Lee, 2018, BMC Genomics.

A cytoplasmic RNA virus generates functional viral small RNAs and regulates viral IRES activity in mammalian cells

Jen-Ren Wang, D. Ojcius, P. Tang, 2014, Nucleic acids research.

Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis

Richard D. Hayes, Shelby L. Bidwell, Joana C. Silva, 2007, Science.

FunctionAnnotator, a versatile and efficient web tool for non-model organism annotation

Timothy H. Wu, Ruei-chi R. Gan, C. Chiu, 2017, Scientific Reports.

Identification of putative miRNAs from the deep-branching unicellular flagellates.

P. Lyu, Po-Jung Huang, P. Tang, 2012, Genomics.

APOBEC3A is an oral cancer prognostic biomarker in Taiwanese carriers of an APOBEC deletion polymorphism

Po-Jung Huang, Henry Rodriguez, Ting-Wen Chen, 2017, Nature Communications.

Responding to a Zoonotic Emergency with Multi-omics Research: Pentatrichomonas hominis Hydrogenosomal Protein Characterization with Use of RNA Sequencing and Proteomics.

C. Chiu, Po-Jung Huang, Kuo-Yang Huang, 2016, Omics : a journal of integrative biology.

Novel Approach for Coexpression Analysis of E2F1–3 and MYC Target Genes in Chronic Myelogenous Leukemia

Jun Yu, C. Shyu, P. Tang, 2014, BioMed research international.

Complete Genome and Transcriptomes of Streptococcus parasanguinis FW213: Phylogenic Relations and Potential Virulence Mechanisms

Songnian Hu, J. Geng, C. Chiu, 2012, PloS one.

Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics

T. Sicheritz-Pontén, P. Tang, R. Hirt, 2010, BMC Genomics.

Potential impact on kidney infection: a whole-genome analysis of Leptospira santarosai serovar Shermani

C. Chiu, P. Tang, Ting-Wen Chen, 2014, Emerging Microbes & Infections.

Identification and characterisation of microRNAs in young adults of Angiostrongylus cantonensis via a deep-sequencing approach

P. Tang, M. Kuo, Shih-Hsin Chang, 2013, Memorias do Instituto Oswaldo Cruz.

Whole Genome DNA Methylation Analysis of Obstructive Sleep Apnea: IL1R2, NPR2, AR, SP140 Methylation and Clinical Phenotype.

P. Tang, C. Liou, Chung-Jen Chen, 2016, Sleep.

Invasion of murine respiratory tract epithelial cells by Chryseobacterium meningosepticum and identification of genes present specifically in an invasive strain.

C. Chiu, P. Tang, L. Su, 2006, The new microbiologica.

Gene-expression analysis of cold-stress response in the sexually transmitted protist Trichomonas vaginalis.

Po-Jung Huang, Kuo-Yang Huang, P. Tang, 2015, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

Adaptive responses to glucose restriction enhance cell survival, antioxidant capability, and autophagy of the protozoan parasite Trichomonas vaginalis.

Kuo-Yang Huang, P. Tang, Yi-Kai Fang, 2014, Biochimica et biophysica acta.

ChloroMitoCU: Codon patterns across organelle genomes for functional genomics and evolutionary applications

Kinshuk C. Nayak, Ruei-chi R. Gan, C. Varotto, 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.

Apoptosis-like cell death induced by Salmonella in Acanthamoeba rhysodes.

C. Chiu, P. Tang, Hsiu-Ling Chen, 2009, Genomics.

Protein cysteine S-nitrosylation provides reducing power by enhancing lactate dehydrogenase activity in Trichomonas vaginalis under iron deficiency

C. Chiu, Po-Jung Huang, Chi-Ching Lee, 2020, Parasites & Vectors.

Double-Stranded RNA Viruses Are Released From Trichomonas vaginalis Inside Small Extracellular Vesicles and Modulate the Exosomal Cargo

V. Beneš, P. Tang, Seow-Chin Ong, 2022, Frontiers in Microbiology.

Recombinant α-actinin subunit antigens of Trichomonas vaginalis as potential vaccine candidates in protecting against trichomoniasis

P. Tang, D. Lai, Z. Lun, 2017, Parasites & Vectors.

Novel Insights into the Molecular Events Linking to Cell Death Induced by Tetracycline in the Amitochondriate Protozoan Trichomonas vaginalis

Po-Jung Huang, Chi-Ching Lee, Kuo-Yang Huang, 2015, Antimicrobial Agents and Chemotherapy.

Phosphoproteome profiling of the sexually transmitted pathogen Trichomonas vaginalis.

Hsien-Da Huang, Kuo-Yang Huang, Yuan-Ming Yeh, 2013, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

Malate dehydrogenase is negatively regulated by miR-1 in Trichomonas vaginalis

Po-Jung Huang, Kuo-Yang Huang, P. Tang, 2009, Parasitology Research.

A proteome reference map of Trichomonas vaginalis

Richie Ruei-Chi Gan, Po-Jung Huang, Kuo-Yang Huang, 2009, Parasitology Research.

Uptake and utilization of arachidonic acid in infective larvae of Angiostrongylus cantonensis

P. Tang, L-c. Wang, 2010, Journal of Helminthology.

Potential role of autophagy in proteolysis in Trichomonas vaginalis.

C. Chiu, Po-Jung Huang, Kuo-Yang Huang, 2019, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

Genomic analysis of maternal carriage of group B Streptococcus and transmission routes of neonatal sepsis.

C. Chiu, Yuan-Ming Yeh, P. Tang, 2021, The Journal of infection.

Proteomic Analysis of the Effect of Cyanide on Klebsiella oxytoca

Kuo-Yang Huang, P. Tang, S. Chen, 2010, Current Microbiology.

Complete nucleotide sequence of pSCV50, the virulence plasmid of Salmonella enterica serovar Choleraesuis SC-B67.

Songnian Hu, Hong Yu, C. Chiu, 2006, Plasmid.

CPAP: Cancer Panel Analysis Pipeline

Ruei-chi R. Gan, Po-Jung Huang, Chi-Ching Lee, 2013, Human mutation.

ChIPseek, a web-based analysis tool for ChIP data

Timothy H. Wu, Ruei-chi R. Gan, Po-Jung Huang, 2014, BMC Genomics.

A transcriptomic study on the pepsin-activated infective larvae of Angiostrongylus cantonensis.

P. Tang, Shih-Hsin Chang, Lian-Chen Wang, 2011, Molecular and biochemical parasitology.

A transcriptomic analysis on gene expressions in the infective third and pathogenic fifth larval stages of Angiostrongylus cantonensis.

P. Tang, Shih-Hsin Chang, K. Chow, 2014, Parasitology international.

The change of microbial community from chlorinated solvent-contaminated groundwater after biostimulation using the metagenome analysis.

Yi-Kuan Tseng, P. Tang, C. Kao, 2016, Journal of hazardous materials.

Genetic Indicators of Drug Resistance in the Highly Repetitive Genome of Trichomonas vaginalis

J. Carlton, P. Scheid, Po-Jung Huang, 2017, Genome biology and evolution.

Genetic indicators of drug resistance in the highly repetitive genomes of Trichomonas vaginalis and other trichomonads

J. Carlton, P. Scheid, Po-Jung Huang, 2016, bioRxiv.

Functional profiling of the Tritrichomonas foetus transcriptome and proteome.

Po-Jung Huang, Kuo-Yang Huang, P. Tang, 2013, Molecular and biochemical parasitology.

Proteomic signatures of metronidazole-resistant Trichomonas vaginalis reveal novel proteins associated with drug resistance

Po-Jung Huang, Kuo-Yang Huang, P. Tang, 2020, Parasites & Vectors.

Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling

Klaus O. Kopec, P. Hegemann, A. Bateman, 2013, Genome Biology.

The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen

Songnian Hu, Petrus Tang, Chishih Chu, 2005, Nucleic acids research.

Comparative Transcriptomic and Proteomic Analyses of Trichomonas vaginalis following Adherence to Fibronectin

Po-Jung Huang, Kuo-Yang Huang, P. Tang, 2012, Infection and Immunity.

following Adherence to Fibronectin Analyses of Trichomonas vaginalis Comparative Transcriptomic and Proteomic

Po-Jung Huang, Kuo-Yang Huang, P. Tang, 2012 .

Involvement of the GP63 protease in infection of Trichomonas vaginalis

Songnian Hu, Jun Yu, P. Tang, 2011, Parasitology Research.

Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.

Ngan-Ming Tsang, Petrus Tang, Kai-Ping Chang, 2009, American journal of human genetics.

Intronic microRNA: discovery and biological implications.

Petrus Tang, Wen-Chang Lin, P. Tang, 2007, DNA and cell biology.

The integrated analysis of transcriptome and proteome for exploring the biodegradation mechanism of 2, 4, 6-trinitrotoluene by Citrobacter sp.

Chien-Cheng Chen, P. Tang, S. Chen, 2018, Journal of hazardous materials.

A novel DNA sequence periodicity decodes nucleosome positioning

Songnian Hu, Petrus Tang, Kaifu Chen, 2008, Nucleic acids research.

Antioxidant defense is one of the mechanisms by which mosquito cells survive dengue 2 viral infection.

Tien-Huang Chen, Wei-June Chen, P. Tang, 2011, Virology.

CoMutPlotter: a web tool for visual summary of mutations in cancer cohorts

Ping-Chiang Lyu, Petrus Tang, Po-Jung Huang, 2019, BMC Medical Genomics.

mSignatureDB: a database for deciphering mutational signatures in human cancers

Chi-Ching Lee, Petrus Tang, Po-Jung Huang, 2017, Nucleic Acids Res..

DSAP: deep-sequencing small RNA analysis pipeline

Chi-Ching Lee, Wei-Chen Lin, Yi-Chung Liu, 2010, Nucleic Acids Res..

Identification of microRNA in the protist Trichomonas vaginalis.

Richie Ruei-Chi Gan, C. Chiu, Po-Jung Huang, 2009, Genomics.

VAReporter: variant reporter for cancer research of massive parallel sequencing

C. Chiu, Po-Jung Huang, Chi-Ching Lee, 2018, BMC Genomics.

Vanno: A Visualization‐Aided Variant Annotation Tool

Po-Jung Huang, Ting-Wen Chen, Petrus Tang, 2015, Human mutation.

CMPD: cancer mutant proteome database

Chi-Ching Lee, Ting-Wen Chen, Petrus Tang, 2014, Nucleic Acids Res..

Using affinity capillary electrophoresis to evaluate average binding constant of 18‐mer diphospho‐tyrosine peptide to antiphosphotyrosine Fab

P. Tang, S. Hsu, Shiming Lin, 1999, Electrophoresis.

Reticulon 3 Binds the 2C Protein of Enterovirus 71 and Is Required for Viral Replication*

P. Tang, Kwang-Huei Lin, J. Horng, 2007, Journal of Biological Chemistry.

VIP DB--a viral protein domain usage and distribution database.

Timothy H. Wu, Richie Ruei-Chi Gan, P. Tang, 2012, Genomics.

An evolutionary analysis of trypanosomatid GP63 proteases

Songnian Hu, Kaifu Chen, P. Tang, 2011, Parasitology Research.

Comparative studies on the proteomic expression patterns in the third- and fifth-stage larvae of Angiostrongylus cantonensis

P. Tang, C. Yen, Lian-Chen Wang, 2014, Parasitology Research.

Transcriptome profiling of the fifth-stage larvae of Angiostrongylus cantonensis by next-generation sequencing

Ruei-chi R. Gan, P. Tang, Shih-Hsin Chang, 2013, Parasitology Research.

FastAnnotator- an efficient transcript annotation web tool

Timothy H. Wu, Ruei-chi R. Gan, Po-Jung Huang, 2012, BMC Genomics.

Metabolic reprogramming of hydrogenosomal amino acids in Trichomonas vaginalis under glucose restriction.

C. Chiu, Po-Jung Huang, Kuo-Yang Huang, 2017, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14

Songnian Hu, Jun Yu, P. Cui, 2009, BMC Genomics.

RNA recombination in Hepatitis delta virus: Identification of a novel naturally occurring recombinant.

Po-Jung Huang, Chi-Ching Lee, P. Tang, 2017, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

DeepVariant-on-Spark: Small-Scale Genome Analysis Using a Cloud-Based Computing Framework

Po-Jung Huang, Petrus Tang, Wei-Hung Cheng, 2020, Comput. Math. Methods Medicine.

FunctionAnnotator, a versatile and efficient web tool for non-model organism annotation

Timothy H. Wu, Ruei-chi R. Gan, C. Chiu, 2017, Scientific Reports.

Mapping short reads to a genome without using hash look-up table algorithm and Burrows Wheeler Transformation

Chuan Yi Tang, Ming-Yuan Huang, Chun Yuan Lin, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop.

Is the whole greater than the sum of its parts? De novo assembly strategies for bacterial genomes based on paired-end sequencing

Timothy H. Wu, Ruei-chi R. Gan, C. Chiu, 2015, BMC Genomics.

Nitric oxide maintains cell survival of Trichomonas vaginalis upon iron depletion

C. Chiu, Po-Jung Huang, Kuo-Yang Huang, 2015, Parasites & Vectors.

Acquisition of hydrogenosomal presequences: examples from Trichomonas vaginalis.

Songnian Hu, P. Tang, Dongliang Yu, 2012, FEMS microbiology letters.

Dissecting the Transcriptomes of Multiple Metronidazole-Resistant and Sensitive Trichomonas vaginalis Strains Identified Distinct Genes and Pathways Associated with Drug Resistance and Cell Death

P. Lyu, Po-Jung Huang, Chi-Ching Lee, 2021, Biomedicines.

The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen

Qiyu Bao, C. Chiu, P. Tang, 2005, Nucleic Acids Research.

Transcriptomic Identification of Iron-Regulated and Iron-Independent Gene Copies within the Heavily Duplicated Trichomonas vaginalis Genome

Po-Jung Huang, Kuo-Yang Huang, P. Tang, 2012, Genome biology and evolution.

ChIPseek, a web-based analysis tool for ChIP data

Po-Jung Huang, Ting-Wen Chen, Petrus Tang, 2014, BMC Genomics.

Identification of Endosymbiotic Virus in Small Extracellular Vesicles Derived from Trichomonas vaginalis

Po-Jung Huang, Chi-Ching Lee, Yuan-Ming Yeh, 2022, Genes.

Vaginal Microbiota of the Sexually Transmitted Infections Caused by Chlamydia trachomatis and Trichomonas vaginalis in Women with Vaginitis in Taiwan

Po-Jung Huang, Chi-Ching Lee, Kuo-Yang Huang, 2021, Microorganisms.

A Transcriptome Study of Progeroid Neurocutaneous Syndrome Reveals POSTN As a New Element in Proline Metabolic Disorder

D. Lin, P. Tang, L. Chu, 2018, Aging and disease.

γ-Carboxymuconolactone decarboxylase: a novel cell cycle-related basal body protein in the early branching eukaryote Trichomonas vaginalis

C. Chiu, Po-Jung Huang, Chi-Ching Lee, 2017, Parasites & Vectors.

Ultra-deep targeted sequencing of advanced oral squamous cell carcinoma identifies a mutation-based prognostic gene signature

T. Yen, C. Liao, Po-Jung Huang, 2015, Oncotarget.

γ-Carboxymuconolactone decarboxylase: a novel cell cycle-related basal body protein in the early branching eukaryote Trichomonas vaginalis

C. Chiu, Po-Jung Huang, Chi-Ching Lee, 2017, Parasites & Vectors.

APOBEC3A is an oral cancer prognostic biomarker in Taiwanese carriers of an APOBEC deletion polymorphism

Jing Wang, H. Rodriguez, L. See, 2017, Nature Communications.

Peripheral Immune Cell Gene Expression Changes in Advanced Non-Small Cell Lung Cancer Patients Treated with First Line Combination Chemotherapy

Chung-Jen Chen, Petrus Tang, Ching-Yuan Wu, 2013, PloS one.

Inactivation of the tight junction gene CLDN11 by aberrant hypermethylation modulates tubulins polymerization and promotes cell migration in nasopharyngeal carcinoma

Yuxiang Chen, Kai-Ping Chang, P. Tang, 2018, Journal of experimental & clinical cancer research : CR.

Metabolomics analysis reveals changes related to pseudocyst formation induced by iron depletion in Trichomonas vaginalis

Po-Jung Huang, Chi-Ching Lee, Yuan-Ming Yeh, 2023, Parasites & Vectors.

Helminth egg analysis platform (HEAP): An opened platform for microscopic helminth egg identification and quantification based on the integration of deep learning architectures.

Po-Jung Huang, Chi-Ching Lee, Yuan-Ming Yeh, 2021, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

Is the whole greater than the sum of its parts? De novo assembly strategies for bacterial genomes based on paired-end sequencing

Po-Jung Huang, Ting-Wen Chen, Petrus Tang, 2015, BMC Genomics.

PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms

Timothy H. Wu, Richie Ruei-Chi Gan, Hsien-Da Huang, 2016, BMC Bioinformatics.

Exploring microRNA-mediated alteration of EGFR signaling pathway in non-small cell lung cancer using an mRNA:miRNA regression model supported by target prediction databases.

Chi-Ren Shyu, Petrus Tang, Fengfeng Wang, 2014, Genomics.

Pathogenic Protist Transmembranome database (PPTdb): a web-based platform for searching and analysis of protist transmembrane proteins

Po-Jung Huang, Petrus Tang, Yuan-Ming Yeh, 2019, BMC Bioinformatics.

Nitric oxide maintains cell survival of Trichomonas vaginalis upon iron depletion

C. Chiu, Po-Jung Huang, Kuo-Yang Huang, 2015, Parasites & Vectors.

Ultra-deep targeted sequencing of advanced oral squamous cell carcinoma identifies a mutation-based prognostic gene signature

T. Yen, C. Liao, Po-Jung Huang, 2015, Oncotarget.

Comparative studies on the proteomic expression patterns in the third- and fifth-stage larvae of Angiostrongylus cantonensis

P. Tang, C. Yen, Lian-Chen Wang, 2014, Parasitology Research.

FastAnnotator- an efficient transcript annotation web tool

Po-Jung Huang, Ting-Wen Chen, Petrus Tang, 2012, BMC Genomics.

Distinct expression of interferon‐induced protein with tetratricopeptide repeats (IFIT) 1/2/3 and other antiviral genes between subsets of dendritic cells induced by dengue virus 2 infection

Kwok-Hung Chan, Wei-June Chen, P. Tang, 2016, Immunology.

Molecular characterisation of Bulinus snails – intermediate hosts of schistosomes in Ogun State, South-western Nigeria

P. Tang, O. Salawu, O. Oso, 2015 .

Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14

Songnian Hu, Jun Yu, P. Cui, 2009, BMC Genomics.

PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms

Hsien-Da Huang, Chi-Ching Lee, Ting-Wen Chen, 2016, BMC Bioinformatics.