Eiru Kim

发表

Network-Based Gene Function Prediction in Mouse and Other Model Vertebrates Using MouseNet Server.

Insuk Lee, Eiru Kim, 2017, Methods in molecular biology.

Biases and Blind-Spots in Genome-Wide CRISPR Knockout Screens

Eiru Kim, Merve Dede, Traver Hart, 2020, bioRxiv.

MUFFINN: cancer gene discovery via network analysis of somatic mutation data

F. Supek, Insuk Lee, Ben Lehner, 2016, Genome Biology.

Systematic comparison of variant calling pipelines using gold standard personal exome variants

Insuk Lee, Eiru Kim, Edward M. Marcotte, 2015, Scientific Reports.

Diversity Across the Pancreatic Ductal Adenocarcinoma Disease Spectrum Revealed by Network-Anchored Functional Genomics

A. Maitra, M. Syed, G. Genovese, 2020 .

Discovery of novel tumor suppressors from CRISPR screens reveals lipid-sensitive subtype of AML

Peter C. DeWeirdt, Annabel K. Sangree, Marissa N. Feeley, 2020 .

Multiplex enCas12a screens show functional buffering by paralogs is systematically absent from genome-wide CRISPR/Cas9 knockout screens

Eiru Kim, Merve Dede, Traver Hart, 2020, bioRxiv.

Multiplex enCas12a screens detect functional buffering among paralogs otherwise masked in monogenic Cas9 knockout screens

Eiru Kim, Merve Dede, Traver Hart, 2020, Genome biology.

TomatoNet: A Genome-wide Co-functional Network for Unveiling Complex Traits of Tomato, a Model Crop for Fleshy Fruits.

A. Iyer-Pascuzzi, Insuk Lee, J. Shim, 2017, Molecular plant.

Discovery of putative tumor suppressors from CRISPR screens reveals rewired lipid metabolism in acute myeloid leukemia cells

Peter C. DeWeirdt, Annabel K. Sangree, Marissa N. Feeley, 2021, Nature Communications.

Multiplex enCas12a screens detect functional buffering among paralogs otherwise masked in monogenic Cas9 knockout screens

Eiru Kim, Merve Dede, Traver Hart, 2020, Genome Biology.

Discovery of novel putative tumor suppressors from CRISPR screens reveals rewired lipid metabolism in AML cells

Peter C. DeWeirdt, Annabel K. Sangree, Marissa N. Feeley, 2020, bioRxiv.

Improved analysis of CRISPR fitness screens and reduced off-target effects with the BAGEL2 gene essentiality classifier

Eiru Kim, Traver Hart, Eiru Kim, 2020, bioRxiv.

FlyNet: a versatile network prioritization server for the Drosophila community

Hyojin Kim, Jung Eun Shim, Sunmo Yang, 2015, Nucleic Acids Res..

TRRUST: a reference database of human transcriptional regulatory interactions

Jung Eun Shim, Sunmo Yang, Insuk Lee, 2015, Scientific Reports.

Functional genomic landscape of cancer-intrinsic evasion of killing by T cells

Gary D Bader, D. M. Simons, J. Moffat, 2020, Nature.

Microvesicles from brain-extract—treated mesenchymal stem cells improve neurological functions in a rat model of ischemic stroke

Eiru Kim, H. Kim, J. Y. Lee, 2016, Scientific Reports.

Improved analysis of CRISPR fitness screens and reduced off-target effects with the BAGEL2 gene essentiality classifier

Eiru Kim, Traver Hart, 2021, Genome Medicine.

YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae

Hyojin Kim, Jung Eun Shim, Insuk Lee, 2013, Nucleic Acids Res..

Assessment of effectiveness of the network-guided genetic screen.

Insuk Lee, Eiru Kim, Jaeyoon Shin, 2010, Molecular bioSystems.

HumanNet v3: an improved database of human gene networks for disease research

Chan Yeong Kim, E. Marcotte, Insuk Lee, 2021, Nucleic Acids Res..

HumanNet v2: human gene networks for disease research

Sunmo Yang, Insuk Lee, Chan Yeong Kim, 2018, Nucleic Acids Res..

Functional genomic landscape of cancer-intrinsic evasion of killing by T cells

Gary D Bader, D. M. Simons, J. Moffat, 2020, Nature.

AR-negative prostate cancer is vulnerable to loss of JMJD1C demethylase

R. DePinho, Y. A. Wang, Chang-Jiun Wu, 2021, Proceedings of the National Academy of Sciences.

COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)

Hyojin Kim, Sunmo Yang, Insuk Lee, 2016, Nucleic Acids Res..

AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species

Hyojin Kim, Jung Eun Shim, Sunmo Yang, 2014, Nucleic Acids Res..

Dynamic rewiring of biological activity across genotype and lineage revealed by context-dependent functional interactions

C. Bristow, Eiru Kim, Traver Hart, 2021, bioRxiv.

A network of human functional gene interactions from knockout fitness screens in cancer cells

Eiru Kim, Traver Hart, Sanjana Srinivasan, 2019, Life Science Alliance.

Modes of Interaction between Individuals Dominate the Topologies of Real World Networks

Insuk Lee, Eiru Kim, Edward M. Marcotte, 2014, bioRxiv.

Traceback of Core Transcription Factors for Soybean Root Growth Maintenance under Water Deficit

R. Meyer, T. Joshi, Dong Xu, 2020, bioRxiv.

SoyNet: a database of co-functional networks for soybean Glycine max

Insuk Lee, Eiru Kim, Sohyun Hwang, 2016, Nucleic Acids Res..

Hierarchical organization of the human cell from a cancer coessentiality network

Eiru Kim, Merve Dede, Traver Hart, 2018, bioRxiv.

MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network

Sunmo Yang, Insuk Lee, Eiru Kim, 2014, Nucleic Acids Res..

MouseNet v2: a database of gene networks for studying the laboratory mouse and eight other model vertebrates

Hyojin Kim, Sunmo Yang, Insuk Lee, 2015, Nucleic Acids Res..

BiomeNet: a database for construction and analysis of functional interaction networks for any species with a sequenced genome

Sunmo Yang, Insuk Lee, Eiru Kim, 2019, Bioinform..

JiffyNet: a web-based instant protein network modeler for newly sequenced species

Insuk Lee, Eiru Kim, Hanhae Kim, 2013, Nucleic Acids Res..