Prateek Kumar

发表

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

S. Henikoff, P. Ng, Prateek Kumar, 2009, Nature Protocols.

Identification of peptidomimetic compounds as potential inhibitors against MurA enzyme of Mycobacterium tuberculosis

Rajanish Giri, Prateek Kumar, K. Saumya, 2019, Journal of biomolecular structure & dynamics.

The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data

S. Kravitz, S. Yooseph, Johannes Goll, 2010, Standards in genomic sciences.

In vitro and in silico anticancer potential analysis of Streptomyces sp. extract against human lung cancer cell line, A549

Prateek Kumar, A. Chauhan, R. Solanki, 2021, 3 Biotech.

Amyloidogenic proteins in the SARS-CoV and SARS-CoV-2 proteomes

M. Vendruscolo, Rajanish Giri, Kundlik Gadhave, 2021, bioRxiv.

Purification and molecular characterization of chitinases from soil actinomycetes

Prateek Kumar, R. Solanki, P. Das, 2017 .

Dark Proteome of Newly Emerged SARS-CoV-2 in Comparison with Human and Bat Coronaviruses

Rajanish Giri, Kundlik Gadhave, Prateek Kumar, 2020, bioRxiv.

When Darkness Becomes a Ray of Light in the Dark Times: Understanding the COVID-19 via the Comparative Analysis of the Dark Proteomes of SARS-CoV-2, Human SARS and Bat SARS-Like Coronaviruses

Christopher J. Oldfield, C. Oldfield, V. Uversky, 2020 .

Understanding the penetrance of intrinsic protein disorder in rotavirus proteome

Ashutosh Kumar Singh, V. Uversky, Rajanish Giri, 2019, International Journal of Biological Macromolecules.

Understanding COVID-19 via comparative analysis of dark proteomes of SARS-CoV-2, human SARS and bat SARS-like coronaviruses

Christopher J. Oldfield, C. Oldfield, V. Uversky, 2020, Cellular and Molecular Life Sciences.

Unlike dengue virus, the conserved 14-23 residues in N-terminal region of Zika virus capsid is not involved in lipid interactions.

Rajanish Giri, Deepak Kumar, Prateek Kumar, 2020, Biochimica et biophysica acta. Biomembranes.

Potential applications of extracellular enzymes from Streptomyces spp. in various industries

Prateek Kumar, R. Solanki, P. Das, 2020, Archives of Microbiology.

The dark side of Alzheimer’s disease: unstructured biology of proteins from the amyloid cascade signaling pathway

V. Uversky, B. Xue, Rajanish Giri, 2020, Cellular and Molecular Life Sciences.

Investigating into the molecular interactions of flavonoids targeting NS2B-NS3 protease from ZIKA virus through in-silico approaches

Rajanish Giri, Prateek Kumar, S. Singh, 2020, Journal of biomolecular structure & dynamics.

The dark proteome of cancer: Intrinsic disorderedness and functionality of HIF-1α along with its interacting proteins.

Rajanish Giri, Kundlik Gadhave, Prateek Kumar, 2019, Progress in molecular biology and translational science.

Unstructured Biology of Proteins from Ubiquitin-Proteasome System: Roles in Cancer and Neurodegenerative Diseases

V. Uversky, Rajanish Giri, Kundlik Gadhave, 2020, Biomolecules.

Beneficial effect of chronic Staphylococcus aureus infection in a model of multiple sclerosis is mediated through the secretion of extracellular adherence protein

Prateek Kumar, M. Bähr, R. Nau, 2015, Journal of Neuroinflammation.

In silico screening of Pueraria tuberosa (PTY-2) for targeting COVID-19 by countering dual targets Mpro and TMPRSS2

Rajanish Giri, Prateek Kumar, N. Garg, 2021, Journal of biomolecular structure & dynamics.

Targeting the NTPase site of Zika virus NS3 helicase for inhibitor discovery

V. Uversky, Rajanish Giri, Deepak Kumar, 2020, Journal of biomolecular structure & dynamics.

Exploring the SARS-CoV-2 structural proteins for multi-epitope vaccine development: an in-silico approach

Rajanish Giri, Prateek Kumar, Amit Kumar, 2020, Expert review of vaccines.

Cystatin C in the early diagnosis of diabetic nephropathy and its correlation with albuminuria

Prateek Kumar, S. B. Nayyar, Kunal Gupta, 2017 .

Quercetin acts as a P-gp modulator via impeding signal transduction from nucleotide-binding domain to transmembrane domain

N. Martins, Rajanish Giri, Prateek Kumar, 2020, Journal of biomolecular structure & dynamics.

Structural dynamics of Zika Virus NS1 via a reductionist approach reveal the disordered nature of its beta roll domain in isolation

Rajanish Giri, Prateek Kumar, S. K. Kapuganti, 2022, bioRxiv.

Role of structural disorder in the multi-functionality of flavivirus proteins

V. Uversky, Rajanish Giri, Prateek Kumar, 2022, Expert review of proteomics.

Systemic Escherichia coli infection does not influence clinical symptoms and neurodegeneration in experimental autoimmune encephalomyelitis

Prateek Kumar, M. Bähr, R. Nau, 2015, BMC Neuroscience.

Exploitation of potential bioactive compounds from two soil derived actinomycetes, Streptomyces sp. strain 196 and RI.24.

Prateek Kumar, R. Solanki, A. Kundu, 2019, Microbiological research.

SARS-CoV-2 NSP1 C-terminal region (residues 130-180) is an intrinsically disordered region

Rajanish Giri, Prateek Kumar, Amit Kumar, 2020, bioRxiv.

The role of cellular prion protein in lipid metabolism in the liver

I. Zerr, F. Llorens, Prateek Kumar, 2020, Prion.

Application of capillary immunoelectrophoresis revealed an age‐ and gender‐dependent regulated expression of PrPC in liver

I. Zerr, F. Llorens, Prateek Kumar, 2015, Electrophoresis.

The dark side of Alzheimer’s disease: unstructured biology of proteins from the amyloid cascade signaling pathway

V. Uversky, B. Xue, Rajanish Giri, 2020, Cellular and Molecular Life Sciences.

Draft genome and secondary metabolite biosynthetic gene clusters of Streptomyces sp. strain 196

Prateek Kumar, A. Chauhan, R. Solanki, 2020, Molecular Biology Reports.

Discovery And Characterization of Small Molecule Inhibitors of Zika Virus Replication

Rajanish Giri, Deepak Kumar, Prateek Kumar, 2022, bioRxiv.

Targeting the nsp2 Cysteine Protease of Chikungunya Virus Using FDA Approved Library and Selected Cysteine Protease Inhibitors

Rajanish Giri, Deepak Kumar, Prateek Kumar, 2019, Pathogens.

Draft genome of Streptomyces sp. strain 130 and functional analysis of extracellular enzyme producing genes

Prateek Kumar, P. Das, Munendra Kumar, 2019, Molecular Biology Reports.

Bisindolemethane derivatives as highly potent anticancer agents: Synthesis, medicinal activity evaluation, cell-based compound discovery, and computational target predictions

Neha Garg, Prateek Kumar, Divya Dhasmana, 2020, Comput. Biol. Medicine.

Zika virus NS4A cytosolic region (residues 1-48) is an intrinsically disordered domain and folds upon binding to lipids.

Rajanish Giri, Prateek Kumar, Ankur Kumar, 2020, Virology.

CatWalk gait analysis in a rat model of multiple sclerosis

Prateek Kumar, M. Bähr, K. Jung, 2016, BMC Neuroscience.

Mitoxantrone dihydrochloride, an FDA approved drug, binds with SARS-CoV-2 NSP1 C-terminal

Rajanish Giri, Prateek Kumar, Taniya Bhardwaj, 2021, bioRxiv.

One microsecond MD simulations of the SARS-CoV-2 main protease and hydroxychloroquine complex reveal the intricate nature of binding

Rajanish Giri, Prateek Kumar, N. Garg, 2021, Journal of biomolecular structure & dynamics.

Polysaccharides like pentagalloylglucose, parishin a and stevioside inhibits the viral entry by binding the Zika virus envelope protein

Rajanish Giri, Prateek Kumar, Nitin Sharma, 2020, Journal of biomolecular structure & dynamics.

Investigating the conformational dynamics of Zika virus NS4B protein

Rajanish Giri, Prateek Kumar, Taniya Bhardwaj, 2021, bioRxiv.

Microsecond simulations and CD spectroscopy reveals the intrinsically disordered nature of SARS-CoV-2 spike-C-terminal cytoplasmic tail (residues 1242–1273) in isolation

Rajanish Giri, Prateek Kumar, N. Garg, 2021, bioRxiv.

Microsecond simulation unravel the structural dynamics of SARS-CoV-2 Spike-C-terminal cytoplasmic tail (residues 1242-1273)

Rajanish Giri, Prateek Kumar, N. Garg, 2021 .

SIFT web server: predicting effects of amino acid substitutions on proteins

Jing Hu, Steven Henikoff, Prateek Kumar, 2012, Nucleic Acids Res..

Neurodegeneration in Autoimmune Optic Neuritis Is Associated with Altered APP Cleavage in Neurons and Up-Regulation of p53

M. Rossner, Prateek Kumar, M. Bähr, 2015, PloS one.

Regulation of Banana Phytoene Synthase (MaPSY) Expression, Characterization and Their Modulation under Various Abiotic Stress Conditions

Shrikant S. Mantri, Shivani, Prateek Kumar, 2017, Front. Plant Sci..

Iatrogenic B12-deficient peripheral neuropathy following nitrous oxide administration for functional tonic leg spasm: A case report

Prateek Kumar, D. Kaski, T. Warner, 2017, Clinical Neurology and Neurosurgery.

Analysis of the dark proteome of Chandipura virus reveals maximum propensity for intrinsic disorder in phosphoprotein

V. Uversky, D. P. Sarkar, Rajanish Giri, 2021, Scientific Reports.

Computational methods to study intrinsically disordered proteins

V. Uversky, Rajanish Giri, Prateek Kumar, 2022, Advances in Protein Molecular and Structural Biology Methods.

The influence of common infections on clinical course and neurodegeneration in an animal model of multiple sclerosis

Prateek Kumar, 2015 .

SARS-CoV-2 NSP1 C-terminal (residues 131–180) is an intrinsically disordered region in isolation

Ashok Kumar, Rajanish Giri, Prateek Kumar, 2021, Current Research in Virological Science.

Molecular Dynamic Simulation of Intrinsically Disordered Proteins and Relevant Forcefields

Rajanish Giri, Prateek Kumar, Amit Kumar, 2021 .

Folding and structural polymorphism of p53 C-terminal domain: One peptide with many conformations.

V. Uversky, Rajanish Giri, Prateek Kumar, 2020, Archives of biochemistry and biophysics.

Reprofiling of approved drugs against SARS-CoV-2 main protease: an in-silico study

Rajanish Giri, Prateek Kumar, N. Garg, 2020, Journal of biomolecular structure & dynamics.

Genetic Variability, Heritability and Genetic Advance for Yield and its Contributing Traits in Garlic (Allium sativum L.)

Prateek Kumar, A. Singh, P. K. Maurya, 2018 .

A novel inhibitor L755507 efficiently blocks c-Myc–MAX heterodimerization and induces apoptosis in cancer cells

Rajanish Giri, Prateek Kumar, N. Garg, 2021, The Journal of biological chemistry.

Functional inhibition of c-Myc using novel inhibitors identified through “hot spot” targeting

M. Coumar, Neha Garg, Rajanish Giri, 2022, The Journal of biological chemistry.

Anti-tuberculotic thionamide antibiotics show antioxidative and neuronal cytoprotective nature by inhibiting amyloid formation in human insulin and amyloid β-42

Rajanish Giri, Kundlik Gadhave, Prateek Kumar, 2021 .

Studies on genetic variability in Germplasm of coriander (Coriandrum sativum L.)

Prateek Kumar, Devraj Singh, Sharvan Kumar, 2018 .

Particle Swarm Based Evolution and Generation of Test Data Using Mutation Testing

Sanjay Misra, Bharti Suri, Nishtha Jatana, 2016, ICCSA.

Therapeutics targeting Nogo-A hold promise for stroke restoration.

Prateek Kumar, L. Moon, 2013, CNS & neurological disorders drug targets.

Investigating the conformational dynamics of SARS-CoV-2 NSP6 protein with emphasis on non-transmembrane 91–112 & 231–290 regions

Rajanish Giri, Prateek Kumar, Amit Kumar, 2021, bioRxiv.

Small molecule inhibitors possibly targeting the rearrangement of Zika virus Envelope protein.

A. Tuplin, Rajanish Giri, Prateek Kumar, 2020, Antiviral research.

Test Suite Reduction by Mutation Testing Mapped to Set Cover Problem

Bharti Suri, Bimlesh Wadhwa, Nishtha Jatana, 2016, ICTCS.

An insight into SARS-CoV-2 Membrane protein interaction with Spike, Envelope, and Nucleocapsid proteins

Rajanish Giri, Prateek Kumar, Amit Kumar, 2020, bioRxiv.

Phytochemical Screening and Antimicrobial Activity of Ficus religiosa

Prateek Kumar, V. Prakash, Nishtha K. Singh, 2017 .

Japanese encephalitis virus – exploring the dark proteome and disorder–function paradigm

Vladimir N Uversky, Prateek Kumar, V. Uversky, 2020, The FEBS journal.

Systemic Escherichia coli infection does not influence clinical symptoms and neurodegeneration in experimental autoimmune encephalomyelitis

Prateek Kumar, M. Bähr, R. Nau, 2015, BMC Neuroscience.

Beneficial effect of chronic Staphylococcus aureus infection in a model of multiple sclerosis is mediated through the secretion of extracellular adherence protein

Prateek Kumar, M. Bähr, R. Nau, 2015, Journal of Neuroinflammation.

Salvianolic acid B noncovalently interacts with disordered c-Myc: a computational and spectroscopic-based study.

Rajanish Giri, Prateek Kumar, N. Garg, 2021, Future medicinal chemistry.

Conformational dynamics of 13 amino acids long NSP11 of SARS-CoV-2 under membrane mimetics and different solvent conditions

Rajanish Giri, Kundlik Gadhave, Prateek Kumar, 2021, Microbial Pathogenesis.

NSP 11 of SARS-CoV-2 is an Intrinsically Disordered Protein

Rajanish Giri, Kundlik Gadhave, Prateek Kumar, 2020, bioRxiv.

Conformational Dynamics of NSP11 Peptide of SARS-CoV-2 Under Membrane Mimetics and Different Solvent Conditions

Rajanish Giri, Kundlik Gadhave, Prateek Kumar, 2020 .

TO STUDY THE PREVALENCE OF FATTY LIVER AND RETINOPATHY IN NEWLY DIAGNOSED CASES OF TYPE 2 DIABETES MELLITUS

Prateek Kumar, P. Kaur, Baljinderpal Singh, 2017 .

Environmental Dependence of the Structure of the C-terminal Domain of the SARS-CoV-2 Envelope Protein

M. Vendruscolo, Rajanish Giri, Kundlik Gadhave, 2020, bioRxiv.

Coronaviruses Spike glycoprotein endodomains: the sequence and structure-based comprehensive study

Rajanish Giri, Prateek Kumar, Aparna Bhardwaj, 2023, bioRxiv.

Understanding COVID-19 via comparative analysis of dark proteomes of SARS-CoV-2, human SARS and bat SARS-like coronaviruses

Christopher J. Oldfield, V. Uversky, Rajanish Giri, 2020, Cellular and Molecular Life Sciences.

Structure-based virtual screening approach reveals natural multi-target compounds for the development of antimalarial drugs to combat drug resistance.

Rajanish Giri, Prateek Kumar, V. Prajapati, 2023, Journal of biomolecular structure & dynamics.

Assessment of genetic variation for growth and economic traits among the genotypes of tomato [Solanum lycopersicum (Mill.) Wettsd.]

Prateek Kumar, Vishal Tripathi, Devraj Singh, 2018 .

Genetic variability, heritability and genetic advance for yield and its contributing traits in tomato (Solanum Lycopersicon Mill.)

Prateek Kumar, C. Ram, R. K. Shukla, 2018 .

Character association and path coefficient analysis of yield and its contributing traits in tomato (SolanumLycopersicon Mill.)

Prateek Kumar, Devraj Singh, S. Shrivastav, 2018 .

Identification of Naturally Occurring Antiviral Molecules for SARS-CoV-2 Mitigation

Sunil Sharma, Rajanish Giri, Prateek Kumar, 2021 .

Met58 and di-acidic motif located at C-terminal region of SARS-CoV-2 ORF6 plays a crucial role in its structural conformations

Rajanish Giri, Prateek Kumar, K. Saumya, 2023, bioRxiv.

Amyloidogenic proteins in the SARS-CoV and SARS-CoV-2 proteomes

M. Vendruscolo, Rajanish Giri, Kundlik Gadhave, 2023, Nature Communications.

CatWalk gait analysis in a rat model of multiple sclerosis

Prateek Kumar, M. Bähr, K. Jung, 2016, BMC Neuroscience.

Transactivation domain of Adenovirus Early Region 1A (E1A): Investigating folding dynamics and aggregation

Rajanish Giri, Kundlik Gadhave, Prateek Kumar, 2022, Current research in structural biology.

Investigating the folding dynamics of NS2B protein of Zika virus

Rajanish Giri, P. M. Mishra, Prateek Kumar, 2022, bioRxiv.

Experiments and simulation on ZIKV NS2B-NS3 protease reveal its complex folding.

Rajanish Giri, Prateek Kumar, S. Singh, 2021, Virology.

Application of capillary immunoelectrophoresis revealed an age‐ and gender‐dependent regulated expression of PrPC in liver

I. Zerr, F. Llorens, Prateek Kumar, 2015, Electrophoresis.