A. Porollo

发表

An XRCC4 splice mutation associated with severe short stature, gonadal failure, and early-onset metabolic syndrome.

Aleksey A. Porollo, C. de Bruin, V. Mericq, 2015, The Journal of clinical endocrinology and metabolism.

p62 is a key regulator of nutrient sensing in the mTORC1 pathway.

Aleksey A. Porollo, Aleksey Porollo, Shadi Abu-Baker, 2011, Molecular cell.

Maximum Feasibility Approach for Consensus Classifiers : Applications to Protein Structure Prediction

Aleksey A. Porollo, Jaroslaw Meller, Michael Wagner, 2004 .

Enhanced prediction of conformational flexibility and phosphorylation in proteins.

Aleksey A. Porollo, R. Adamczak, J. Meller, 2010, Advances in experimental medicine and biology.

The Epstein-Barr Virus B-ZIP Protein Zta Recognizes Specific DNA Sequences Containing 5-Methylcytosine and 5-Hydroxymethylcytosine.

Aleksey A. Porollo, M. Weirauch, D. Tillo, 2017, Biochemistry.

Survey of public domain software for docking simulations and virtual screening

Aleksey A. Porollo, Michal Kouril, Aleksey Porollo, 2011, Human Genomics.

Control of Nutrient Stress-Induced Metabolic Reprogramming by PKCζ in Tumorigenesis

Aleksey A. Porollo, L. Brill, M. Medvedovic, 2013, Cell.

Effects of parabens on adipocyte differentiation.

Aleksey A. Porollo, A. Porollo, Jeremy O. Jones, 2013, Toxicological sciences : an official journal of the Society of Toxicology.

Granulocyte macrophage-colony stimulating factor induced Zn sequestration enhances macrophage superoxide and limits intracellular pathogen survival.

Aleksey A. Porollo, A. Porollo, G. Deepe, 2013, Immunity.

A Quantitative Model to Estimate Drug Resistance in Pathogens

Aleksey A. Porollo, Frazier N. Baker, A. Porollo, 2016, Journal of fungi.

Functional Characterization of Pneumocystis carinii Inositol Transporter 1

Edward J Merino, A. Porollo, M. Cushion, 2016, mBio.

Cadherin 26 is an alpha integrin-binding epithelial receptor regulated during allergic inflammation

M. Wormald, A. Porollo, M. Jiménez-Dalmaroni, 2016, Mucosal Immunology.

CYP63A2, a Catalytically Versatile Fungal P450 Monooxygenase Capable of Oxidizing Higher-Molecular-Weight Polycyclic Aromatic Hydrocarbons, Alkylphenols, and Alkanes

Aleksey A. Porollo, A. Porollo, J. Yadav, 2013, Applied and Environmental Microbiology.

The bZIP mutant CEBPB (V285A) has sequence specific DNA binding propensities similar to CREB1.

D. Tillo, S. Durell, C. Vinson, 2019, Biochimica et biophysica acta. Gene regulatory mechanisms.

Zinc Sequestration: Arming Phagocyte Defense against Fungal Attack

A. Porollo, G. Deepe, J. Caruso, 2013, PLoS pathogens.

Environmental Allergens Trigger Type 2 Inflammation Through Ripoptosome Activation

A. Porollo, J. Habel, J. Caldwell, 2021, Nature Immunology.

SEQ2MGS: an effective tool for generating realistic artificial metagenomes from the existing sequencing data

Aleksey A. Porollo, A. Porollo, P. Van Camp, 2022, NAR genomics and bioinformatics.

Computer simulation of thermal decomposition reactions of alkyl nitrates

A. Porollo, N. Zefirov, D. E. Lushnikov, 1999 .

Congenital heart disease and aortic arch variants associated with mutation in PHOX2B

A. Porollo, R. Hopkin, J. Cnota, 2018, Genetics in Medicine.

IL-4 Induces Metallothionein 3- and SLC30A4-Dependent Increase in Intracellular Zn2+ that Promotes Pathogen Persistence in Macrophages

Aleksey A. Porollo, A. Porollo, S. Divanovic, 2016, Cell reports.

The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNAsequences containing 5-methylcytosine and5-hydroxymethylcytosine

Aleksey A. Porollo, M. Weirauch, D. Tillo, 2018 .

Analysis of current antifungal agents and their targets within the Pneumocystis carinii genome.

J. Meller, A. Porollo, M. Cushion, 2012, Current drug targets.

Advances in Genomics Research of Pneumocystis Species

A. Porollo, M. Cushion, 2020 .

Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data

Aleksey A. Porollo, A. Porollo, D. Haslam, 2020, Frontiers in Microbiology.

Metallothionein 3-Zinc Axis Suppresses Caspase-11 Inflammasome Activation and Impairs Antibacterial Immunity

Aleksey A. Porollo, A. Porollo, Suba Nookala, 2021, bioRxiv.

Phenome-wide association study (PheWAS) in EMR-linked pediatric cohorts, genetically links PLCL1 to speech language development and IL5-IL13 to Eosinophilic Esophagitis

Keith Marsolo, Marylyn D. Ritchie, Aleksey A. Porollo, 2014, Front. Genet..

Tumor-suppressing Function of Caspase-2 Requires Catalytic Site Cys-320 and Site Ser-139 in Mice*

Aleksey A. Porollo, A. Porollo, Keqin Ren, 2012, The Journal of Biological Chemistry.

Enhanced recognition of protein transmembrane domains with prediction-based structural profiles

Aleksey A. Porollo, Jaroslaw Meller, Mark Jarrell, 2006, Bioinform..

Mitochondria-specific transgenic overexpression of connexin-43 simulates preconditioning-induced cytoprotection of stem cells.

Aleksey A. Porollo, A. Porollo, H. Haider, 2010, Cardiovascular research.

Congenital heart disease and aortic arch variants associated with mutation in PHOX2B

Aleksey A. Porollo, A. Porollo, R. Hopkin, 2018, Genetics in Medicine.

A Fungal P450 (CYP5136A3) Capable of Oxidizing Polycyclic Aromatic Hydrocarbons and Endocrine Disrupting Alkylphenols: Role of Trp129 and Leu324

A. Porollo, J. Yadav, K. Syed, 2011, PloS one.

Bioinformatics Approaches to the Understanding of Molecular Mechanisms in Antimicrobial Resistance

Aleksey A. Porollo, A. Porollo, D. Haslam, 2020, International journal of molecular sciences.

PROTEINS: Structure, Function, and Bioinformatics 56:753–767 (2004) Accurate Prediction of Solvent Accessibility Using Neural Networks–Based Regression

Aleksey Porollo, Jarosław Meller, Rafał Adamczak, 2022 .

POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations

Aleksey A. Porollo, Jaroslaw Meller, J. Meller, 2010, Nucleic Acids Res..

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D

Aleksey A. Porollo, Jaroslaw Meller, J. Meller, 2007, BMC Bioinformatics.

Transcriptome of Pneumocystis carinii during Fulminate Infection: Carbohydrate Metabolism and the Concept of a Compatible Parasite

J. Arnold, R. Adamczak, J. Meller, 2007, PloS one.

A fast and robust protocol for metataxonomic analysis using RNAseq data

Aleksey Porollo, Prakash Velayutham, A. Porollo, 2017, Microbiome.

Prediction‐based fingerprints of protein–protein interactions

Aleksey A. Porollo, Aleksey Porollo, Jarosław Meller, 2006, Proteins.

MutaCYP: Classification of missense mutations in human cytochromes P450

A. Porollo, Kenneth Fechter, 2014, BMC Medical Genomics.

EC2KEGG: a command line tool for comparison of metabolic pathways

Aleksey A. Porollo, A. Porollo, 2014, Source Code for Biology and Medicine.

The Persistent Challenge of Pneumocystis Growth Outside the Mammalian Lung: Past and Future Approaches

A. Porollo, M. Cushion, Steven G. Sayson, 2021, Frontiers in Microbiology.

Draft Assembly and Annotation of the Pneumocystis carinii Genome

Aleksey A. Porollo, J. Meller, A. Porollo, 2006, The Journal of eukaryotic microbiology.

Gene Expression of Pneumocystis murina after Treatment with Anidulafungin Results in Strong Signals for Sexual Reproduction, Cell Wall Integrity, and Cell Cycle Arrest, Indicating a Requirement for Ascus Formation for Proliferation

A. Porollo, M. Cushion, A. Ashbaugh, 2018, Antimicrobial Agents and Chemotherapy.

Combining prediction of secondary structure and solvent accessibility in proteins

Aleksey A. Porollo, Aleksey Porollo, Jarosław Meller, 2005, Proteins.

Ultrastructure of Highly Ordered Granules in Alveolar Type II Cells in Several Species

Aleksey A. Porollo, A. Porollo, Marian L Miller, 2018, Anatomical record.

POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins

Aleksey A. Porollo, Jaroslaw Meller, Rafal Adamczak, 2004, Bioinform..

Calpain-14 and its association with eosinophilic esophagitis.

Aleksey A. Porollo, A. Porollo, M. Rothenberg, 2017, The Journal of allergy and clinical immunology.

Differentiation of the Molecular Structures of Nitro Compounds as the Basis for Simulation of Their Thermal Destruction Processes

A. Porollo, A. B. Sheremetev, T. Pivina, 2010 .

Differentiation of the molecular structure of nitro compounds as the basis for simulation of their thermal destruction processes

A. Porollo, A. B. Sheremetev, T. Pivina, 2009 .

Linear Regression Models for Solvent Accessibility Prediction in Proteins

Aleksey A. Porollo, Jaroslaw Meller, Michael Wagner, 2005, J. Comput. Biol..

Interleukin-6 receptor enhances early colonization of the murine omentum by upregulation of a mannose family receptor, LY75, in ovarian tumor cells

Aleksey A. Porollo, D. Plas, A. Porollo, 2011, Clinical & Experimental Metastasis.

Altering the Double-Stranded DNA Specificity of the bZIP Domain of Zta with Site-Directed Mutagenesis at N182

Aleksey A. Porollo, D. Tillo, S. Durell, 2021, ACS Omega.

Metallothionein 3 Controls the Phenotype and Metabolic Programming of Alternatively Activated Macrophages.

A. Porollo, S. Divanovic, G. Deepe, 2019, Cell reports.

Chymotrypsin-like Elastase 1 is Required for Emphysema Progression

A. Porollo, R. Zemans, Jana A. Lewis, 2020 .

J. Gilthorpe, A. Espay, A. Porollo, 2023, Cerebellum.

Indications that Chymotrypsin-like Elastase 1 is Involved in Emphysema

A. Porollo, R. Schumann, R. Joshi, 2020, medRxiv.

On setting up and assessing docking simulations for virtual screening.

Aleksey A. Porollo, Jaroslaw Meller, Aleksey Porollo, 2012, Methods in molecular biology.

In Silico Sequence Analysis and Homology Modeling of Dihydropteroate Synthase in Pneumocystis Pneumonia

Miller, C. Beard, J. Stringer, 2015 .

A fast and robust protocol for metataxonomic analysis using RNAseq data

A. Porollo, D. Taft, P. Velayutham, 2017, Microbiome.

The 14th International Workshops on Opportunistic Protists (IWOP 14)

A. Porollo, A. Sinai, L. Weiss, 2018, The Journal of eukaryotic microbiology.

Survey of Protein Sequence Embedding Models

C. Tran, A. Porollo, Siddharth Khadkikar, 2023, International journal of molecular sciences.

Comparative Genomics of Pneumocystis Species Suggests the Absence of Genes for myo-Inositol Synthesis and Reliance on Inositol Transport and Metabolism

J. Welge, A. Porollo, M. Cushion, 2014, mBio.

Large‐Scale Characterization of Introns in the Pneumocystis carinii Genome

J. Meller, A. Porollo, M. Cushion, 2006, The Journal of eukaryotic microbiology.

Rational engineering of the fungal P450 monooxygenase CYP5136A3 to improve its oxidizing activity toward polycyclic aromatic hydrocarbons.

A. Porollo, J. Yadav, K. Syed, 2013, Protein engineering, design & selection : PEDS.

Enhanced recognition of protein transmembrane domains with prediction-based structural profiles

R. Adamczak, J. Meller, A. Porollo, 2006, Bioinform..

CoeViz 2: Protein Graphs Derived From Amino Acid Covariance

Frazier N. Baker, A. Porollo, Shivchander Sudalairaj, 2021, Frontiers in Bioinformatics.