A. Poupon

发表

A docking analysis of the statistical physics of protein–protein recognition

Jérôme Azé, Joël Janin, Julie Bernauer, 2005, Physical biology.

Analysis and prediction of protein quaternary structure.

J. Janin, A. Poupon, 2010, Methods in molecular biology.

The Translation Regulatory Subunit eIF3f Controls the Kinase-Dependent mTOR Signaling Required for Muscle Differentiation and Hypertrophy in Mouse

A. Poupon, A. Csibi, M. Leibovitch, 2010, PloS one.

Competing G protein-coupled receptor kinases balance G protein and β-arrestin signaling

François Fages, Frédérique Clément, Anne Poupon, 2012, Molecular systems biology.

Voronoi and Voronoi-related tessellations in studies of protein structure and interaction.

A. Poupon, 2004, Current opinion in structural biology.

Evolution of Genes Involved in Gamete Interaction: Evidence for Positive Selection, Duplications and Losses in Vertebrates

G. Pascal, A. Poupon, P. Monget, 2012, PloS one.

MAbTope: A Method for Improved Epitope Mapping

A. Poupon, N. Gallay, P. Crépieux, 2018, The Journal of Immunology.

Workflow Description to Dynamically Model β-Arrestin Signaling Networks.

A. Poupon, R. Yvinec, P. Crépieux, 2018, Methods in molecular biology.

Towards a systems biology approach of-G protein-coupled receptor signalling: challenges and expectations.

F. Fages, A. Poupon, D. Heitzler, 2009, Comptes rendus biologies.

Computational Models to Decipher Cell-Signaling Pathways

A. Poupon, E. Reiter, 2014 .

Unraveling the molecular architecture of a G protein-coupled receptor/β-arrestin/Erk module complex

D. Ritchie, A. Poupon, J. Azé, 2015, Scientific Reports.

Profiling of FSHR negative allosteric modulators on LH/CGR reveals biased antagonism with implications in steroidogenesis

A. Poupon, R. Yvinec, G. Jégot, 2016, Molecular and Cellular Endocrinology.

Phosphorylation of β-arrestin2 at Thr383 by MEK underlies β-arrestin-dependent activation of Erk1/2 by GPCRs

P. Marin, J. Bockaert, A. Poupon, 2017, eLife.

A Comprehensive View of the β-Arrestinome

Martin H. Schaefer, Luis Serrano, Anne Poupon, 2017, Front. Endocrinol..

Activation of a GPCR leads to eIF4G phosphorylation at the 5' cap and to IRES-dependent translation.

R. Backofen, J. Morales, A. Poupon, 2014, Journal of molecular endocrinology.

Sequence and structural features of the T‐fold, an original tunnelling building unit

N. Colloc'h, A. Poupon, J. Mornon, 2000, Proteins.

Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives

G. Labesse, B. Henrissat, L. Canard, 1997, Cellular and Molecular Life Sciences CMLS.

The immunoglobulin fold family: sequence analysis and 3D structure comparisons.

A. Poupon, J. Mornon, J. Mornon, 1999, Protein engineering.

Follicle-Stimulating Hormone Receptor: Advances and Remaining Challenges.

A. Poupon, R. Yvinec, P. Crépieux, 2018, International review of cell and molecular biology.

Advances in computational modeling approaches of pituitary gonadotropin signaling

A. Poupon, R. Yvinec, P. Crépieux, 2018, Expert opinion on drug discovery.

4C3 Human Monoclonal Antibody: A Proof of Concept for Non-pathogenic Proteinase 3 Anti-neutrophil Cytoplasmic Antibodies in Granulomatosis With Polyangiitis

A. Poupon, V. Gouilleux-Gruart, B. Korkmaz, 2020, Frontiers in Immunology.

Predicting the protein folding nucleus from a sequence

Anne Poupon, Jean-Paul Mornon, A. Poupon, 1999, FEBS letters.

Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly‐roll fold

J. Janin, J. François, M. Graille, 2005, Protein science : a publication of the Protein Society.

Agonist anti-ChemR23 mAb reduces tissue neutrophil accumulation and triggers chronic inflammation resolution

A. Poupon, J. Mosnier, R. Danger, 2021, Science Advances.

Protein-protein docking based on shape complementarity and Voronoi fingerprint

D. Ritchie, A. Poupon, J. Azé, 2011 .

Evolutionary Origin of Bone Morphogenetic Protein 15 and Growth and Differentiation Factor 9 and Differential Selective Pressure Between Mono- and Polyovulating Species1

B. Servin, G. Pascal, A. Poupon, 2014, Biology of reproduction.

Running title: SELECTIVE PRESSURE VARIATION IN BMP15 AND GDF9

B. Servin, G. Pascal, A. Poupon, 2014 .

The orphan receptor GPR88 blunts the signaling of opioid receptors and multiple striatal GPCRs

B. Kieffer, A. Poupon, C. Gauthier, 2020, eLife.

5B9, a monoclonal antiplatelet factor 4/heparin IgG with a human Fc fragment that mimics heparin‐induced thrombocytopenia antibodies

A. Poupon, Y. Gruel, C. Vayne, 2017, Journal of thrombosis and haemostasis : JTH.

Characterization of New Monoclonal PF4-Specific Antibodies as Useful Tools for Studies on Typical and Autoimmune Heparin-Induced Thrombocytopenia

A. Poupon, Y. Gruel, A. Greinacher, 2020, Thrombosis and Haemostasis.

Origin and evolution of transmembrane Chl-binding proteins: hydrophobic cluster analysis suggests a common one-helix ancestor for prokaryotic (Pcb) and eukaryotic (LHC) antenna protein superfamilies.

A. Poupon, F. Partensky, L. Garczarek, 2003, FEMS microbiology letters.

Cloning, production, and purification of proteins for a medium-scale structural genomics project.

J. Janin, H. van Tilbeurgh, A. Poupon, 2007, Methods in molecular biology.

Pharmacological Characterization of Low Molecular Weight Biased Agonists at the Follicle Stimulating Hormone Receptor

A. Poupon, R. Yvinec, S. Palmer, 2021, International journal of molecular sciences.

Contributors

Lily Q. Dong, Armando R. Tovar, S. Sealfon, 1988, International Journal of Technology Assessment in Health Care.

TNB-738, a biparatopic antibody, boosts intracellular NAD+ by inhibiting CD38 ecto-enzyme activity

A. Poupon, E. Chini, M. Cuturi, 2022, mAbs.

“Topohydrophobic positions” as key markers of globular protein folds

A. Poupon, J. Mornon, 1999 .

Structure modelling and site‐directed mutagenesis of the rat aromatic L‐amino acid pyridoxal 5´‐phosphate‐dependent decarboxylase: A functional study

J. Thibault, G. Labesse, F. Gros, 1999, Proteins.

Methods to Determine Interaction Interfaces Between β-Arrestins and Their Protein Partners.

A. Poupon, P. Crépieux, E. Reiter, 2019, Methods in molecular biology.

G protein‐dependent signaling triggers a β‐arrestin‐scaffolded p70S6K/ rpS6 module that controls 5'TOP mRNA translation

A. Poupon, S. Tesseraud, A. Inoue, 2017, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Mapping the Follicle-Stimulating Hormone-Induced Signaling Networks

Anne Poupon, Domitille Heitzler, Pascale Crépieux, 2011, Front. Endocrin..

mRNA-selective translation induced by FSH in primary Sertoli cells.

J. Morales, A. Poupon, P. Vourc'h, 2012, Molecular endocrinology.

Novel pathways in gonadotropin receptor signaling and biased agonism

A. Poupon, M. Maurel, P. Crépieux, 2011, Reviews in Endocrine and Metabolic Disorders.

Biased Signaling and Allosteric Modulation at the FSHR

A. Poupon, R. Yvinec, P. Crépieux, 2019, Front. Endocrinol..

Developmental regulation of p70 S6 kinase by a G protein-coupled receptor dynamically modelized in primary cells

H. Guillou, A. Poupon, S. Tesseraud, 2009, Cellular and Molecular Life Sciences.

A recycling anti-transferrin receptor-1 monoclonal antibody as an efficient therapy for erythroleukemia through target up-regulation and antibody-dependent cytotoxic effector functions

A. Poupon, V. Gouilleux-Gruart, M. Jarlier, 2019, mAbs.

Biased signalling in follicle stimulating hormone action

A. Poupon, G. Jégot, G. Durand, 2014, Molecular and Cellular Endocrinology.

Integrating microRNAs into the complexity of gonadotropin signaling networks

A. Poupon, N. Gallay, P. Crépieux, 2013, Front. Cell Dev. Biol..

Prediction of unfolded segments in a protein sequence based on amino acid composition

Anne Poupon, Karen Coeytaux, A. Poupon, 2005, Bioinform..

Immunotherapy of triple-negative breast cancer with cathepsin D-targeting antibodies

A. Turtoi, B. Robert, P. Martineau, 2019, Journal of Immunotherapy for Cancer.

Eculizumab epitope on complement C5: Progress towards a better understanding of the mechanism of action.

A. Poupon, V. Gouilleux-Gruart, N. Gallay, 2016, Molecular immunology.

Crystal structure of the YGR205w protein from Saccharomyces cerevisiae: Close structural resemblance to E. coli pantothenate kinase

J. Janin, J. Ferrer, M. Graille, 2004, Proteins.

A structural genomics initiative on yeast proteins.

J. Janin, H. van Tilbeurgh, E. Guittet, 2003, Journal of synchrotron radiation.

A Collaborative Filtering Approach for Protein-Protein Docking Scoring Functions

Julie Bernauer, Anne Poupon, Jérôme Azé, 2011, PloS one.

Functional specificity conferred by the unique plasticity of fully α‐helical Ras and Rho GAPs

A. Poupon, J. Mornon, I. Callebaut, 2000 .

The VIZIER project: Preparedness against pathogenic RNA viruses

D I Stuart, A. M. Leontovich, T A Jones, 2007, Antiviral Research.

β-arrestin signalling and bias in hormone-responsive GPCRs

A. Poupon, R. Yvinec, P. Crépieux, 2017, Molecular and Cellular Endocrinology.

Antibodies targeting G protein-coupled receptors: Recent advances and therapeutic challenges

M. Parmentier, J. Steyaert, J. Pin, 2017, mAbs.

Postembryonic Fish Brain Proliferation Zones Exhibit Neuroepithelial‐Type Gene Expression Profile

J. Joly, A. Poupon, B. Rizzi, 2017, Stem cells.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Kengo Kinoshita, Haruki Nakamura, Genki Terashi, 2011, Journal of molecular biology.

Structure of Protein Phosphatase Methyltransferase 1 (PPM1), a Leucine Carboxyl Methyltransferase Involved in the Regulation of Protein Phosphatase 2A Activity*

J. Janin, M. Graille, H. van Tilbeurgh, 2003, Journal of Biological Chemistry.

A New in Silico Antibody Similarity Measure Both Identifies Large Sets of Epitope Binders with Distinct CDRs and Accurately Predicts Off-Target Reactivity

A. Poupon, N. Gallay, P. Crépieux, 2022, International journal of molecular sciences.

Data management in structural genomics: an overview.

Mark Harris, Anne Pajon, Herman van Tilbeurgh, 2008, Methods in molecular biology.

Design of a data model for developing laboratory information management and analysis systems for protein production

Li Xueli, Wayne Boucher, David I Stuart, 2004, Proteins.

Computational modeling approaches in gonadotropin signaling.

A. Poupon, R. Yvinec, P. Crépieux, 2016, Theriogenology.

A logic-based method to build signaling networks and propose experimental plans

Christine Froidevaux, Anne Poupon, Adrien Rougny, 2018, Scientific Reports.

Crystal Structure of the Yeast Phox Homology (PX) Domain Protein Grd19p Complexed to Phosphatidylinositol-3-phosphate*

J. Janin, M. Graille, H. van Tilbeurgh, 2003, Journal of Biological Chemistry.

Populations of hydrophobic amino acids within protein globular domains: Identification of conserved “topohydrophobic” positions

A. Poupon, J. Mornon, 1998, Proteins.

Crystal structure of the YDR533c S. cerevisiae protein, a class II member of the Hsp31 family.

J. Janin, J. Ferrer, M. Graille, 2004, Structure.

The Uteroglobin Fold

J. Delettré, A. Poupon, J. Mornon, 2000, Annals of the New York Academy of Sciences.

Accurate determination of epitope for antibodies with unknown 3D structures

A. Poupon, P. Crépieux, E. Reiter, 2021, mAbs.

Towards a logic-based method to infer provenance-aware molecular networks

Christine Froidevaux, Sarah Cohen-Boulakia, Anne Poupon, 2012 .

Assessing Gonadotropin Receptor Function by Resonance Energy Transfer-Based Assays

A. Poupon, G. Jégot, N. Gallay, 2015, Front. Endocrinol..

Workflow Description to Dynamically Model β-Arrestin Signaling Networks.

Anne Poupon, Pascale Crépieux, Eric Reiter, 2018, Methods in molecular biology.

DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions

Julie Bernauer, Joël Janin, Anne Poupon, 2008, Bioinform..

Exploring epitope and functional diversity of anti-SARS-CoV2 antibodies using AI-based methods

A. Poupon, T. Bourquard, A. Musnier, 2020, bioRxiv.

The RanBP2/RanGAP1-SUMO complex gates β-arrestin2 nuclear entry to regulate the Mdm2-p53 signaling axis

L. Gaboury, G. Baillie, S. Angers, 2021, Oncogene.

A logic-based method to build signaling networks and propose experimental plans

A. Poupon, P. Crépieux, E. Reiter, 2018, Scientific Reports.

Completing signaling networks by abductive reasoning with perturbation experiments

Katsumi Inoue, Yoshitaka Yamamoto, Christine Froidevaux, 2015, ILP.

β-Arrestins and Endocrine-Related GPCRs

A. Poupon, R. Yvinec, P. Crépieux, 2021 .

The Paris-Sud yeast structural genomics pilot-project: from structure to function.

J. Janin, M. Graille, H. van Tilbeurgh, 2004, Biochimie.

Crystal Structure of the Yeast Phox Homology (Px) Protein Grd19P (Sorting Nexin 3) Complexed to Phosphatidylinositol-3-Phosphate

J. Janin, M. Graille, H. Tilbeurgh, 2003 .

Towards a semi-automatic functional annotation tool based on decision-tree techniques

Céline Rouveirol, Christine Froidevaux, Philippe Bessières, 2008, BMC proceedings.

Harnessing Fc/FcRn Affinity Data from Patents with Different Machine Learning Methods

A. Poupon, V. Gouilleux-Gruart, M. Pugnière, 2023, International journal of molecular sciences.

BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btn022 Structural bioinformatics DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein–protein interactions

J. Janin, R. Bahadur, F. Rodier, 2007 .

A new protein-protein docking scoring function based on interface residue properties

Jérôme Azé, Julie Bernauer, Joël Janin, 2007, Bioinform..

Crystal structure and confirmation of the alanine:glyoxylate aminotransferase activity of the YFL030w yeast protein.

J. Janin, J. Ferrer, H. van Tilbeurgh, 2005, Biochimie.

Crystal Structure of the Bifunctional Chorismate Synthase from Saccharomyces cerevisiae*

Joël Janin, Nicolas Leulliot, Marc Graille, 2003, Journal of Biological Chemistry.

Electronic Reprint Biological Crystallography Halx: an Open-source Lims (laboratory Information Management System) for Small-to Large-scale Laboratories Biological Crystallography Halx: an Open-source Lims (laboratory Information Management System) for Small-to Large-scale Laboratories

Jaime Prilusky, Joel L Sussman, Eric Oueillet, 2022 .

Postembryonic Fish Brain Proliferation Zones Exhibit Neuroepithelial‐Type Gene Expression Profile

J. Joly, A. Poupon, B. Rizzi, 2017, Stem cells.

Combined Multiplexed Phage Display, High-Throughput Sequencing, and Functional Assays as a Platform for Identifying Modulatory VHHs Targeting the FSHR

A. Poupon, P. Crépieux, V. Jugnarain, 2023, International journal of molecular sciences.

Analysis and prediction of protein quaternary structure.

J. Janin, A. Poupon, 2010, Methods in molecular biology.

Using Kendall-τ Meta-Bagging to Improve Protein-Protein Docking Predictions

David W. Ritchie, Jérôme Azé, Anne Poupon, 2011, PRIB.

Comparing Voronoi and Laguerre Tessellations in the Protein-Protein Docking Context

Jérôme Azé, Julie Bernauer, Anne Poupon, 2009, 2009 Sixth International Symposium on Voronoi Diagrams.

Advances in computational modeling approaches of pituitary gonadotropin signaling

A. Poupon, R. Yvinec, P. Crépieux, 2018, Expert opinion on drug discovery.

Applying artificial intelligence to accelerate and de-risk antibody discovery

A. Poupon, T. Bourquard, Z. Omahdi, 2024, Frontiers in Drug Discovery.