J. Bamford

发表

Does common architecture reveal a viral lineage spanning all three domains of life?

R. M. Burnett, D. Bamford, S. D. Benson, 2004, Molecular cell.

Protist predation can select for bacteria with lowered susceptibility to infection by lytic phages

J. Laakso, J. Bamford, T. Hiltunen, 2015, BMC Evolutionary Biology.

High Temperature and Bacteriophages Can Indirectly Select for Bacterial Pathogenicity in Environmental Reservoirs

J. Mappes, J. Laakso, J. Bamford, 2011, PloS one.

Selenomethionine labeling of large biological macromolecular complexes: probing the structure of marine bacterial virus PM2.

D. Stuart, N. Abrescia, J. Grimes, 2008, Journal of structural biology.

Evolutionary rescue of bacteria via horizontal gene transfer under a lethal β-lactam concentration.

J. Bamford, Sari Mattila, M. Jalasvuori, 2014, Journal of global antimicrobial resistance.

Membrane structure and interactions with protein and DNA in bacteriophage PRD1

D. Stuart, N. Abrescia, J. Grimes, 2004, Nature.

Binding of an Escherichia coli double-stranded DNA virus PRD1 to a receptor coded by an IncP-type plasmid

D. Bamford, J. Bamford, M. Kotilainen, 1993, Journal of bacteriology.

A snapshot of viral evolution from genome analysis of the tectiviridae family.

Ari-Matti Saren, Lars Paulin, L. Paulin, 2005, Journal of molecular biology.

Identification of five novel tectiviruses in Bacillus strains: analysis of a highly variable region generating genetic diversity.

H. Kokko, J. Bamford, N. Fornelos, 2013, Research in microbiology.

Genome Characterization of Lipid-Containing Marine Bacteriophage PM2 by Transposon Insertion Mutagenesis

M. Krupovic, H. Kivelä, D. Bamford, 2006, Journal of Virology.

Large-scale purification of membrane-containing bacteriophage PRD1 and its subviral particles.

D. Bamford, J. Bamford, D. H. Bamford, 1991, Virology.

Probing phage PRD1-specific proteins with monoclonal and polyclonal antibodies.

D. Bamford, J. Bamford, A. Hänninen, 1997, Virology.

Minor Proteins, Mobile Arms, and Membrane-Capsid Interactions in Bacteriophage Prd1 Capsid Assembly

S. Fuller, R. M. Burnett, D. Bamford, 2001 .

A minor capsid protein P30 is essential for bacteriophage PRD1 capsid assembly.

D. Bamford, J. Bamford, P. Rydman, 2001, Journal of molecular biology.

The Bacillus thuringiensis Linear Double-Stranded DNA Phage Bam35, Which Is Highly Similar to the Bacillus cereus Linear Plasmid pBClin15, Has a Prophage State

R. M. Burnett, D. Bamford, S. D. Benson, 2003, Journal of bacteriology.

Crystallization of the membrane-containing bacteriophage PRD1 in quartz capillaries by vapour diffusion.

D. Stuart, J. Grimes, D. Bamford, 2003, Acta crystallographica. Section D, Biological crystallography.

The Linear Double-Stranded DNA of Phage Bam35 Enters Lysogenic Host Cells, but the Late Phage Functions Are Suppressed

D. Bamford, J. Bamford, R. Daugelavičius, 2005, Journal of bacteriology.

Polarized Raman spectroscopy of double-stranded RNA from bacteriophage phi6: local Raman tensors of base and backbone vibrations.

J. Bamford, G. Thomas, M. Tsuboi, 1997, Biophysical journal.

Scoping the effectiveness and evolutionary obstacles in using plasmid-dependent phages to fight antibiotic resistance.

J. Bamford, T. Hiltunen, Sari Mattila, 2016, Future microbiology.

Collagenous proteins multiply

D. Bamford, J. Bamford, 1990, Nature.

The Entry Mechanism of Membrane-Containing Phage Bam35 Infecting Bacillus thuringiensis

D. Bamford, J. Bamford, R. Daugelavičius, 2006, Journal of bacteriology.

Preliminary crystallographic analysis of the major capsid protein P2 of the lipid-containing bacteriophage PM2.

D. Stuart, N. Abrescia, J. Grimes, 2005, Acta crystallographica. Section F, Structural biology and crystallization communications.

High Nutrient Concentration Can Induce Virulence Factor Expression and Cause Higher Virulence in an Environmentally Transmitted Pathogen

J. Bamford, Anssi Lipponen, Lotta‐Riina Sundberg, 2016, Microbial Ecology.

Icosahedral dsDNA Bacterial Viruses with an Internal Membrane

S. Butcher, J. Bamford, 2008 .

Bacteriophage selection against a plasmid-encoded sex apparatus leads to the loss of antibiotic-resistance plasmids

A. Buckling, J. Bamford, Ville‐Petri Friman, 2011, Biology Letters.

Purified membrane-containing procapsids of bacteriophage PRD1 package the viral genome.

H. Kivelä, D. Bamford, J. Bamford, 2009, Journal of molecular biology.

The Holin Protein of Bacteriophage PRD1 Forms a Pore for Small-Molecule and Endolysin Translocation

D. Bamford, J. Bamford, R. Daugelavičius, 2005, Journal of bacteriology.

Changes in host cell energetics in response to bacteriophage PRD1 DNA entry

D. Bamford, J. Bamford, R. Daugelavičius, 1997, Journal of bacteriology.

Structure and assembly of bacteriophage PRD1, and Escherichia coli virus with a membrane.

D. Bamford, J. Bamford, J. Caldentey, 1990, Journal of structural biology.

Structural study of the lipid-containing bacteriophage PRD1 and its capsid and DNA components by laser Raman spectroscopy.

D. Bamford, J. Bamford, G. Thomas, 1990, Biochemistry.

[25] Isolation, purification, and function of assembly intermediates and subviral particles of bacteriophages PRD1 and σ6

D. Bamford, J. Bamford, P. Ojala, 1995 .

Phage-Borne Factors and Host LexA Regulate the Lytic Switch in Phage GIL01

J. Bamford, N. Fornelos, J. Mahillon, 2011, Journal of bacteriology.

Phage-borne factors and host LexA regulate the lytic switch in phage GIL 01 1 Running title : Phage GIL 01 is under LexA control 2

J. Bamford, N. Fornelos, J. Mahillon, 2011 .

Dynamics of a Laterally Evolving Community of Ribozyme-Like Agents as Studied with a Rule-Based Computing System

J. Bamford, M. Jalasvuori, Maija P. Jalasvuori, 2010, Origins of Life and Evolution of Biospheres.

Nature author index

J. Grimes, J. Bamford, G. Fontaine, 2003 .

The complete genome sequence of PM2, the first lipid-containing bacterial virus To Be isolated.

L. Paulin, H. Kivelä, D. Bamford, 1999, Virology.

Capsomer proteins of bacteriophage PRD1, a bacterial virus with a membrane.

D. Bamford, J. Bamford, 1990, Virology.

Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2.

D. Stuart, N. Abrescia, J. Grimes, 2008, Molecular cell.

Genetics for Pseudoalteromonas Provides Tools To Manipulate Marine Bacterial Virus PM2

M. Krupovic, H. Kivelä, J. Bamford, 2007, Journal of bacteriology.

In vitro DNA packaging of PRD1: a common mechanism for internal-membrane viruses.

D. Bamford, J. Bamford, Nelli J Strömsten, 2005, Journal of molecular biology.

Penetration of Membrane-Containing Double-Stranded-DNA Bacteriophage PM2 into Pseudoalteromonas Hosts

H. Kivelä, D. Bamford, J. Bamford, 2004, Journal of bacteriology.

Transcription of Bacteriophage PM2 Involves Phage-Encoded Regulators of Heterologous Origin

D. Bamford, J. Bamford, A. Grahn, 2003, Journal of bacteriology.

Bacteriophage PRD1: a broad host range DSDNA tectivirus with an internal membrane.

D H Bamford, D. Bamford, J. Bamford, 1995, Advances in virus research.

Gammasphaerolipovirus, a newly proposed bacteriophage genus, unifies viruses of halophilic archaea and thermophilic bacteria within the novel family Sphaerolipoviridae

M. Krupovic, I. Rissanen, J. Bamford, 2014, Archives of Virology.

Intensive aquaculture selects for increased virulence and interference competition in bacteria

J. Mappes, T. Ketola, J. Bamford, 2016, Proceedings of the Royal Society B: Biological Sciences.

Phage-Driven Loss of Virulence in a Fish Pathogenic Bacterium

J. Laakso, J. Bamford, E. Laanto, 2012, PloS one.

D. Bamford, J. Bamford, Salla T. Jaakkola, 2012, Journal of Virology.

D. Bamford, J. Bamford, Salla T. Jaakkola, 2012 .

Efficient DNA Packaging of Bacteriophage PRD1 Requires the Unique Vertex Protein P6

D. Bamford, J. Bamford, Nelli J. Karhu, 2007, Journal of Virology.

SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake.

M. Dyall-Smith, C. Bath, H. Kivelä, 2005, Virology.

Integral Membrane Protein P16 of Bacteriophage PRD1 Stabilizes the Adsorption Vertex Structure

D. Bamford, J. Bamford, S. Jaatinen, 2004, Journal of Virology.

Comparative analysis of bacterial viruses Bam35, infecting a gram-positive host, and PRD1, infecting gram-negative hosts, demonstrates a viral lineage.

D. Bamford, J. Bamford, J. Ravantti, 2003, Virology.

The Unique Vertex of Bacterial Virus PRD1 Is Connected to the Viral Internal Membrane

D. Bamford, J. Bamford, Nelli J Strömsten, 2003, Journal of Virology.

Structural studies of the enveloped dsRNA bacteriophage phi 6 of Pseudomonas syringae by Raman spectroscopy. I. The virion and its membrane envelope.

D. Bamford, J. Bamford, G. Thomas, 1993, Journal of molecular biology.

Constituents of SH1, a Novel Lipid-Containing Virus Infecting the Halophilic Euryarchaeon Haloarcula hispanica

M. Dyall-Smith, D. Bamford, J. Bamford, 2005, Journal of Virology.

Structural Co-Evolution of Viruses and Cells in the Primordial World

J. Bamford, M. Jalasvuori, 2008, Origins of Life and Evolution of Biospheres.

MEETING REVIEW Recent Advances in the Expression, Evolution, and Dynamics of

J. Vogel, J. Bamford, C. Arraiano, 2022 .

The Closest Relatives of Icosahedral Viruses of Thermophilic Bacteria Are among Viruses and Plasmids of the Halophilic Archaea

D. Bamford, J. Bamford, N. Kalkkinen, 2009, Journal of Virology.

A Unique Group of Virus-Related, Genome-Integrating Elements Found Solely in the Bacterial Family Thermaceae and the Archaeal Family Halobacteriaceae

J. Bamford, M. Jalasvuori, A. Pawlowski, 2010, Journal of bacteriology.

Viral Evolution Revealed by Bacteriophage PRD1 and Human Adenovirus Coat Protein Structures

R. M. Burnett, D. Bamford, S. D. Benson, 1999, Cell.

On the astrobiological relevance of viruses in extraterrestrial ecosystems

J. Bamford, Anni-Maria Örmälä, M. Jalasvuori, 2009, International Journal of Astrobiology.

Stable Packaging of Phage PRD1 DNA Requires Adsorption Protein P2, Which Binds to the IncP Plasmid-Encoded Conjugative Transfer Complex

D. Bamford, J. Bamford, J. Caldentey, 1999, Journal of bacteriology.

Insights into assembly from structural analysis of bacteriophage PRD1

D. Stuart, S. Fuller, R. M. Burnett, 2004, Nature.

Bacteriophage P23-77 Capsid Protein Structures Reveal the Archetype of an Ancient Branch from a Major Virus Lineage

D. Stuart, J. Grimes, I. Rissanen, 2013, Structure.

Viruses and Life: Can There Be One Without the Other?

J. Bamford, M. Jalasvuori, 2010 .

Bacteriophage GIL01 gp7 interacts with host LexA repressor to enhance DNA binding and inhibit RecA-mediated auto-cleavage

J. Bamford, V. Hodnik, G. Anderluh, 2015 .

Comparing the different morphotypes of a fish pathogen - implications for key virulence factors in Flavobacterium columnare

J. Bamford, E. Laanto, Lotta‐Riina Sundberg, 2014, BMC Microbiology.

Purification and characterization of the assembly factor P17 of the lipid-containing bacteriophage PRD1.

P. Kinnunen, D. Bamford, J. Bamford, 1999, European journal of biochemistry.

Comparing the different morphotypes of a fish pathogen - implications for key virulence factors in Flavobacterium columnare

J. Bamford, E. Laanto, Lotta‐Riina Sundberg, 2014, BMC Microbiology.

The Tailless Icosahedral Membrane Virus PRD1 Localizes the Proteins Involved in Genome Packaging and Injection at a Unique Vertex

B. Gowen, S. Fuller, D. Bamford, 2003, Journal of Virology.

The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution.

R. M. Burnett, D. Bamford, S. D. Benson, 2002, Acta crystallographica. Section D, Biological crystallography.

Probing the ability of the coat and vertex protein of the membrane-containing bacteriophage PRD1 to display a meningococcal epitope.

M. Sarvas, D. Bamford, J. Huiskonen, 2003, Virology.

Unique Vertex Genome Packaging and Injection at a PRD 1 Localizes the Proteins Involved in The Tailless Icosahedral Membrane Virus

B. Gowen, S. Fuller, D. Bamford, 2003 .

Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane.

D. Stuart, J. Grimes, D. Bamford, 2002, Journal of structural biology.

Minor proteins, mobile arms and membrane–capsid interactions in the bacteriophage PRD1 capsid

S. Fuller, R. M. Burnett, D. Bamford, 2002, Nature Structural Biology.

Genome organization of membrane-containing bacteriophage PRD1.

D. Bamford, J. Bamford, P. Ojala, 1991, Virology.

Fluorescence properties of the chromophore-binding domain of bacteriophytochrome from Deinococcus radiodurans.

I. Rissanen, J. Bamford, N. Tkachenko, 2013, The journal of physical chemistry. B.

Did the ancient crenarchaeal viruses from the dawn of life survive exceptionally well the eons of meteorite bombardment?

J. Bamford, M. Jalasvuori, 2009, Astrobiology.

Association of colony morphotypes with virulence, growth and resistance against protozoan predation in the fish pathogen Flavobacterium columnare.

J. Mappes, T. Ketola, J. Laakso, 2014, FEMS microbiology ecology.

The use of phage FCL-2 as an alternative to chemotherapy against columnaris disease in aquaculture

J. Bamford, J. Ravantti, E. Laanto, 2015, Front. Microbiol..

Phage Specificity of the Freshwater Fish Pathogen Flavobacterium columnare

J. Bamford, E. Laanto, Lotta‐Riina Sundberg, 2011, Applied and Environmental Microbiology.

Phage Speciﬁcity of the Freshwater Fish Pathogen Flavobacterium columnare (cid:1)

J. Bamford, E. Laanto, Lotta‐Riina Sundberg, 2011 .

Genetics for Pseudoalteromonas provides tools to manipulate marine bacterial 4 virus PM 2 5 6 7

H. Kivelä, J. Bamford, M. Tutino, 2007 .

Comparing the different morphotypes of a fish pathogen - implications for key virulence factors in Flavobacterium columnare

J. Bamford, E. Laanto, Lotta‐Riina Sundberg, 2014, BMC microbiology.

Functional organization of the bacteriophage PRD1 genome

M. O'Neill, D. Bamford, J. Bamford, 1994, Journal of bacteriology.

Bacteriophage GIL01 gp7 interacts with host LexA repressor to enhance DNA binding and inhibit RecA-mediated auto-cleavage

J. Bamford, V. Hodnik, G. Anderluh, 2015, Nucleic acids research.

The IncP plasmid-encoded cell envelope-associated DNA transfer complex increases cell permeability

D. Bamford, J. Bamford, R. Daugelavičius, 1997, Journal of bacteriology.

Recent Advances in the Expression, Evolution, and Dynamics of Prokaryotic Genomes

J. Vogel, J. Bamford, C. Arraiano, 2007, Journal of bacteriology.

Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2.

D. Stuart, N. Abrescia, J. Grimes, 2008, Molecular cell.

Topology of the major capsid protein P3 of bacteriophage PRD1: analysis using monoclonal antibodies and C-terminally truncated proteins.

D. Bamford, J. Bamford, V. Olkkonen, 1993, Virology.

New enveloped dsRNA phage from freshwater habitat.

J. Bamford, M. Poranen, J. Ravantti, 2015, The Journal of general virology.