C. Kojima

发表

Utilization of lysine 13C-methylation NMR for protein–protein interaction studies

Toshimichi Fujiwara, Yoshikazu Hattori, Chojiro Kojima, 2013, Journal of biomolecular NMR.

15N-15N J-coupling across Hg(II): direct observation of Hg(II)-mediated T-T base pairs in a DNA duplex.

Chojiro Kojima, C. Kojima, A. Ono, 2007, Journal of the American Chemical Society.

Hg II /Ag I -mediated base pairs and their NMR spectroscopic studies

Kyoko Furuita, C. Kojima, A. Ono, 2016 .

Simple suppression of spurious peaks in TROSY experiments.

M. Kainosho, C. Kojima, 2000, Journal of magnetic resonance.

Sugar conformation of a stereospecific 2′-R or 2′-S deuterium-labeled DNA decamer studied with proton-proton J coupling constants

Y. Kyōgoku, M. Kainosho, C. Kojima, 2001, Journal of biomolecular NMR.

Protein 19F-labeling using transglutaminase for the NMR study of intermolecular interactions

Yoshikazu Hattori, T. Fujiwara, C. Kojima, 2017, Journal of biomolecular NMR.

Solution Structure of the Cytoplasmic Region of Na+/H+ Exchanger 1 Complexed with Essential Cofactor Calcineurin B Homologous Protein 1*

C. Kojima, S. Wakabayashi, M. Mishima, 2006, Journal of Biological Chemistry.

Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints

T. Ikegami, Yoshikazu Hattori, Kyoko Furuita, 2014, Journal of Biomolecular NMR.

Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B*

M. Shirakawa, K. Sugasawa, F. Hanaoka, 2004, Journal of Biological Chemistry.

Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study.

F. Tama, O. Miyashita, A. Shimada, 2020, Biochimica et biophysica acta. General subjects.

Functional expression of a two-transmembrane HtrII protein using cell-free synthesis

C. Kojima, N. Kamo, T. Kohno, 2011, Biophysics.

Substrate specificity of TOR complex 2 is determined by a ubiquitin-fold domain of the Sin1 subunit

Kyoko Furuita, C. Kojima, K. Shiozaki, 2017, eLife.

Solution structure of an RNA duplex including a C-U base pair.

Y. Kyōgoku, S. Miyashita, M. Kainosho, 2000, Biochemistry.

Developing model systems for the NMR study of substituent effects on the N—H···N hydrogen bond in duplex DNA

M. Kainosho, C. Kojima, A. Ono, 2001 .

Electrostatic Interaction between Oxysterol-binding Protein and VAMP-associated Protein A Revealed by NMR and Mutagenesis Studies*

H. Fukada, Kyoko Furuita, C. Kojima, 2010, The Journal of Biological Chemistry.

Purification, crystallization and preliminary X-ray crystallographic analysis of a rice Rac/Rop GTPase, OsRac1.

K. Shimamoto, A. Nakagawa, I. Ohki, 2014, Acta crystallographica. Section F, Structural biology communications.

1H, 13C, and 15N resonance assignments of human glutathione peroxidase 4

Kyoko Furuita, T. Fujiwara, C. Kojima, 2022, Biomolecular NMR Assignments.

NMR determination of the 2:1 binding complex of naphthyridine carbamate dimer (NCD) and CGG/CGG triad in double-stranded DNA

K. Nakatani, Kyoko Furuita, C. Kojima, 2022, Nucleic acids research.

Letter to the Editor: 1H, 15N and 13C backbone and side-chain assignments of the rice phytochrome B PAS1 domain and backbone assignments of the PAS1-PAS2 domain

T. Yamazaki, E. Katoh, C. Kojima, 2005, Journal of biomolecular NMR.

Crystal structure of potato 14-3-3 protein St14f revealed the importance of helix I in StFDL1 recognition

E. Yamashita, A. Nakagawa, Kyoko Furuita, 2022, Scientific Reports.

Studies of DNA recognition mechanism of transcription factor IRF-4.

H. Fukada, T. Matsuyama, Kyoko Furuita, 2006, Nucleic acids symposium series.

Structural feature of bent DNA recognized by HMGB1.

A. Matsuda, Kyoko Furuita, C. Kojima, 2011, Journal of the American Chemical Society.

Crystallographic characterization of the N-terminal domain of a plant NADPH oxidase.

K. Shimamoto, Toshiyuki Shimizu, C. Kojima, 2008, Acta crystallographica. Section F, Structural biology and crystallization communications.

[21] Induced structural changes in protein-DNA complexes

M. Shirakawa, Y. Kyōgoku, H. Matsuo, 1995 .

Structural effect of complete [Rp]-phosphorothioate and phosphorodithioate substitutions in the DNA strand of a model antisense inhibitor-target RNA complex.

T. James, C. Kojima, B. Karwowski, 1999, Journal of molecular biology.

New Sequential‐Assignment Routes of Nucleic Acid NMR Signals Using a [5′‐13C]‐Labeled DNA Dodecamer

C. Kojima, N. Shimba, E. Suzuki, 2004, Nucleosides, nucleotides & nucleic acids.

Lysine 13 C-Methylation NMR for Analyses of Interactions and Structural Changes

Yoshikazu Hattori, C. Kojima, 2016 .

Utilization of lysine 13C-methylation NMR for protein–protein interaction studies

T. Ikegami, M. Shirakawa, H. Fukada, 2013, Journal of biomolecular NMR.

Quantitative measurement of transverse and longitudinal cross-correlation between 13C-1H dipolar interaction and 13C chemical shift anisotropy: application to a 13C-labeled DNA duplex.

T. James, M. Kainosho, C. Kojima, 1999, Journal of magnetic resonance.

Solution structure of the peptidoglycan binding domain of Bacillus subtilis cell wall lytic enzyme CwlC: characterization of the sporulation-related repeats by NMR.

C. Kojima, J. Sekiguchi, T. Shida, 2005, Biochemistry.

Structural instability of lamin A tail domain modulates its assembly and higher order function in Emery-Dreifuss muscular dystrophy.

Y. Hayashi, C. Kojima, T. Sugiki, 2019, Biochemical and biophysical research communications.

NMR line shape analysis of a multi-state ligand binding mechanism in chitosanase

E. L. Kovrigin, Kyoko Furuita, C. Kojima, 2017, Journal of Biomolecular NMR.

1H, 15N and 13C resonance assignments of the conserved region in the middle domain of S. pombe Sin1 protein

T. Ikegami, Yoshikazu Hattori, Kyoko Furuita, 2014, Biomolecular NMR Assignments.

Biological Magnetic Resonance Data Bank

Jonathan R. Wedell, J. Hoch, Kumaran Baskaran, 2022, Nucleic Acids Res..

Synthesis of 2′-Deoxy[5′-13C]Ribonucleotides and HMQC-Noesy NMR Study of the Dickerson's Dodecamer with 13C-Labeling at the 5′ Positions

C. Kojima, T. Mizukoshi, Y. Ishido, 1999 .

NMR line shape analysis of a multi-state ligand binding mechanism in chitosanase

E. L. Kovrigin, Kyoko Furuita, C. Kojima, 2017, Journal of biomolecular NMR.

Enzymatic Characterization of 5-Methylthioribulose-1-phosphate Dehydratase of the Methionine Salvage Pathway in Bacillus subtilis

C. Kojima, A. Yokota, Yohtaro Saito, 2008, Bioscience, biotechnology, and biochemistry.

A long-lived M-like state of phoborhodopsin that mimics the active state.

C. Kojima, N. Kamo, M. Iwamoto, 2008, Biophysical journal.

Linker region of a halobacterial transducer protein interacts directly with its sensor retinal protein.

C. Kojima, N. Kamo, M. Mishima, 2005, Biochemistry.

Enzymatic Characterization of 5-Methylthioribose 1-Phosphate Isomerase from Bacillus subtilis

Y. Kai, C. Kojima, A. Yokota, 2007, Bioscience, biotechnology, and biochemistry.

A Functional Link Between RuBisCO-like Protein of Bacillus and Photosynthetic RuBisCO

N. Ogasawara, C. Kojima, A. Yokota, 2003, Science.

Solid-phase synthesis of selectively labeled DNA: applications for multidimensional nuclear magnetic resonance spectroscopy.

M. Kainosho, C. Kojima, A. Ono, 2001, Methods in enzymology.

Studies of physicochemical properties of N-H•••N hydrogen bonds in DNA, using selective 15N-labeling and direct 15N 1D NMR

M. Kainosho, C. Kojima, A. Ono, 2000, Journal of biomolecular NMR.

DNA duplex dynamics: NMR relaxation studies of a decamer with uniformly 13C-labeled purine nucleotides.

T. James, M. Kainosho, C. Kojima, 1998, Journal of magnetic resonance.

Stereospecific assignment of H5′ and H5″ in a (5′R)-/(5′S)-deuterium- labeled DNA decamer for3 JHH determination and unambiguous NOE assignments

Y. Kyōgoku, M. Kainosho, C. Kojima, 1998, Journal of Biomolecular NMR.

Small-molecule ligand induces nucleotide flipping in (CAG)n trinucleotide repeats

Masaki Mishima, Motoki Kyo, Chojiro Kojima, 2005, Nature chemical biology.

Site-specific isotope labeling of long RNA for structural and mechanistic studies

C. Kojima, Yoshiyuki Tanaka, Junya Ishikawa, 2011, Nucleic acids research.

Current NMR Techniques for Structure-Based Drug Discovery

Kyoko Furuita, T. Fujiwara, C. Kojima, 2018, Molecules.

Structure Determination of an Ag(I) -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with (1) H/(15) N/(109) Ag NMR Spectroscopy.

J. Kondo, Kyoko Furuita, C. Kojima, 2016, Chemistry.

Exploring a DNA Sequence for the Three-Dimensional Structure Determination of a Silver(I)-Mediated C-C Base Pair in a DNA Duplex By 1H NMR Spectroscopy

Kyoko Furuita, C. Kojima, A. Ono, 2015, Nucleosides, nucleotides & nucleic acids.

Insights into substrate recognition by the Escherichia coli Orf135 protein through its solution structure.

C. Kojima, H. Kamiya, N. Murata‐Kamiya, 2012, Biochemical and biophysical research communications.

Regulation of Rice NADPH Oxidase by Binding of Rac GTPase to Its N-Terminal Extension[W][OA]

H. Yoshioka, K. Shimamoto, C. Kojima, 2007, The Plant Cell Online.

14-3-3 proteins act as intracellular receptors for rice Hd3a florigen

Shojiro Tamaki, K. Shimamoto, A. Nakagawa, 2011, Nature.

Structure and function of florigen and the receptor complex.

K. Shimamoto, I. Ohki, C. Kojima, 2013, Trends in plant science.

Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice

C. Kojima, S. Tsuge, T. Kawasaki, 2014, Nature Communications.

Structure of the N-terminal Regulatory Domain of a Plant NADPH Oxidase and Its Functional Implications*

K. Shimamoto, S. Akashi, Toshiyuki Shimizu, 2009, The Journal of Biological Chemistry.

Structure of the Male Determinant Factor for Brassica Self-incompatibility*

M. Shirakawa, C. Kojima, J. Jee, 2003, Journal of Biological Chemistry.

Sequence requirements of the FFAT‐like motif for specific binding to VAP‐A are revealed by NMR

Kyoko Furuita, T. Fujiwara, C. Kojima, 2021, FEBS letters.

Active repression of IFN regulatory factor-1-mediated transactivation by IFN regulatory factor-4.

T. Matsuyama, C. Kojima, Kazuo Yamamoto, 2005, International immunology.

Intermolecular contacts between the lambda-Cro repressor and the operator DNA characterized by nuclear magnetic resonance spectroscopy.

Y. Kyōgoku, H. Matsuo, C. Kojima, 1999, Journal of biomolecular structure & dynamics.

TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD

K. Shimamoto, I. Ohki, C. Kojima, 2018, Plant & cell physiology.

1H, 15N and 13C resonance assignments of the conserved region in the middle domain of S. pombe Sin1 protein

T. Ikegami, Yoshikazu Hattori, Kyoko Furuita, 2015, Biomolecular NMR assignments.

pCold-GST vector: a novel cold-shock vector containing GST tag for soluble protein production.

C. Kojima, Kokoro Hayashi, 2008, Protein expression and purification.

Structural characterization of the N-terminal kinase-interacting domain of an Hsp90-cochaperone Cdc37 by CD and solution NMR spectroscopy.

Y. Miyata, T. Fujiwara, C. Kojima, 2019, Biochimica et biophysica acta. Proteins and proteomics.

A hybrid strategy combining solution NMR spectroscopy and isothermal titration calorimetry to characterize protein-nanodisc interaction.

T. Fujiwara, C. Kojima, T. Sugiki, 2021, Analytical biochemistry.

Latest approaches for efficient protein production in drug discovery

T. Fujiwara, C. Kojima, T. Sugiki, 2014, Expert opinion on drug discovery.

Biochemical propensity mapping for structural and functional anatomy of importin α IBB domain

T. Fujiwara, C. Kojima, T. Kodama, 2021, bioRxiv.

Amino Acid Selective 13C Labeling and 13C Scrambling Profile Analysis of Protein α and Side-Chain Carbons in Escherichia coli Utilized for Protein Nuclear Magnetic Resonance.

Kyoko Furuita, T. Fujiwara, C. Kojima, 2018, Biochemistry.

The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine

T. Kohno, Yoshikazu Hattori, C. Kojima, 2017, Nucleic acids research.

Non-covalent forces tune the electron transfer complex between ferredoxin and sulfite reductase to optimize enzymatic activity.

T. Ikegami, J. Ladbury, C. Kojima, 2016, The Biochemical journal.

Solution NMR structure and inhibitory effect against amyloid-β fibrillation of Humanin containing a d-isomerized serine residue.

Kyoko Furuita, T. Fujiwara, C. Kojima, 2016, Biochemical and biophysical research communications.

Liquid–liquid phase separation of florigen activation complex induces flowering

A. Nakano, Kyoko Furuita, T. Fujiwara, 2021, bioRxiv.

Phosphoinositide binding by the PH domain in ceramide transfer protein (CERT) is inhibited by hyperphosphorylation of an adjacent serine-repeat motif

T. Fujiwara, C. Kojima, I. Shimada, 2018, The Journal of Biological Chemistry.

Multifunctional chemical inhibitors of the florigen activation complex discovered by structure-based high-throughput screening.

E. Yamashita, Zenpei Shimatani, A. Nakagawa, 2022, The Plant journal : for cell and molecular biology.

The structure of metallo-DNA with consecutive thymine–HgII–thymine base pairs explains positive entropy for the metallo base pair formation

J. Kondo, C. Kojima, A. Ono, 2013, Nucleic acids research.

The Crystal Structure of the Plant Small GTPase OsRac1 Reveals Its Mode of Binding to NADPH Oxidase*

K. Shimamoto, A. Nakagawa, Kyoko Furuita, 2014, The Journal of Biological Chemistry.

NMR Spectroscopic Study of a DNA Duplex with Mercury-Mediated T-T Base Pairs

C. Kojima, A. Ono, Shuji Oda, 2006, Nucleosides, nucleotides & nucleic acids.