Chunhua Li

发表

Network analysis of protein-protein interaction

Shan Chang, Chunhua Li, Xiong Jiao, 2010 .

A holistic molecular docking approach for predicting protein-protein complex structure

Cunxin Wang, B. Liu, Shan Chang, 2010, Science China Life Sciences.

Prediction of PK-specific phosphorylation site based on information entropy

Cunxin Wang, Minghui Wang, Wei-zu Chen, 2008, Science in China Series C: Life Sciences.

Combined topomer CoMFA and hologram QSAR studies of a series of pyrrole derivatives as potential HIV fusion inhibitors

Cunxin Wang, Chunhua Li, Dan Han, 2018, Medicinal Chemistry Research.

Protein–protein docking with binding site patch prediction and network‐based terms enhanced combinatorial scoring

Libin Cao, Xinqi Gong, Shan Chang, 2010, Proteins.

Scoring Function for the Other-type Protein Complexe

Longzhu Q. Shen, Cunxin Wang, Shan Chang, 2006 .

Approach to the unfolding and folding dynamics of add A-riboswitch upon adenine dissociation using a coarse-grained elastic network model.

Yang Zhang, Cunxin Wang, Chunhua Li, 2016, The Journal of chemical physics.

A systems biology-driven approach to construct a comprehensive protein interaction network of influenza A virus with its host

Chunhua Li, Qurat-ul-ann Farooq, Z. Shaukat, 2020, BMC Infectious Diseases.

Exploring the dynamics of RNA molecules with multiscale Gaussian network model

Chunhua Li, Shihao Wang, Weikang Gong, 2020 .

A study on allosteric communication in U1A-snRNA binding interactions: network analysis combined with molecular dynamics data.

Chunhua Li, Weikang Gong, Qi Shao, 2020, Biophysical chemistry.

Computational identification and analysis of early diagnostic biomarkers for kidney cancer

Chunhua Li, J. Tan, Tang Tang, 2019, Journal of Human Genetics.

Inferring Virus-Host relationship between HPV and its host Homo sapiens using protein interaction network

Chunhua Li, Qurat-ul-ann Farooq, Z. Shaukat, 2020, Scientific Reports.

PSPhos: PK-Specific Phosphorylation Site Prediction Using Profile SVM

Cunxin Wang, Chunhua Li, Weizu Chen, 2007 .

Interpreting the Dynamics of Binding Interactions of snRNA and U1A Using a Coarse-Grained Model.

Yang Zhang, Chunhua Li, Jiguo Su, 2019, Biophysical journal.

A coarse-grained method to predict the open-to-closed behavior of glutamine binding protein

Chunhua Li, Yue Zhang, Dashuai Lv, 2017 .

Identification of functionally key residues in maltose transporter with an elastic network model-based thermodynamic method

Cunxin Wang, Chunhua Li, J. Tan, 2016 .

Key Residues in δ Opioid Receptor Allostery Explored by the Elastic Network Model and the Complex Network Model Combined with the Perturbation Method

Chunhua Li, Weikang Gong, Zhongjie Han, 2022, J. Chem. Inf. Model..

Exploring movement and energy in human P-glycoprotein conformational rearrangement

Chunhua Li, Yue Zhang, Weikang Gong, 2019, Journal of biomolecular structure & dynamics.

Multi-epitope chimeric vaccine design against emerging Monkeypox virus via reverse vaccinology techniques- a bioinformatics and immunoinformatics approach

Chunhua Li, Qurat-ul-ann Farooq, L. Rastrelli, 2022, Frontiers in Immunology.

DM-RPIs: Predicting ncRNA-protein interactions using stacked ensembling strategy

Jianjun Tan, Xiaoyi Zhang, Weikang Gong, 2019, Comput. Biol. Chem..

Molecular insight into human P-glycoprotein allosteric transition from outward- to inward-facing state

Chunhua Li, Yue Zhang, Zhongjie Han, 2020 .

Integrating multimeric threading with high-throughput experiments for structural interactome of Escherichia coli

Yang Zhang, Weikang Gong, Aysam Guerler, 2020, bioRxiv.

Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification

Zhen Yang, Yang Liu, Weikang Gong, 2020, BMC Bioinformatics.

Dynamics of binding interactions of TDP‐43 and RNA: An equally weighted multiscale elastic network model study

Chunhua Li, Shihao Wang, Weikang Gong, 2021, Proteins.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Kengo Kinoshita, Haruki Nakamura, Genki Terashi, 2011, Journal of molecular biology.

Protein-protein interactions: Methods, databases, and applications in virus-host study

Chunhua Li, Qurat-ul-ann Farooq, Z. Shaukat, 2021, World journal of virology.

Comparative Proteomics and Genome-Wide Druggability Analyses Prioritized Promising Therapeutic Targets against Drug-Resistant Leishmania tropica

Abida, Chunhua Li, M. Imran, 2023, Microorganisms.

Computational studies on the interactions of nanomaterials with proteins and their impacts

Jingyuan Li, Chunhua Li, Jiguo Su, 2015, 1509.05563.

An efficient perturbation method to predict the functionally key sites of glutamine binding protein

Jianjun Tan, Xiaoyi Zhang, Chunhua Li, 2017, Comput. Biol. Chem..

Equally Weighted Multiscale Elastic Network Model and Its Comparison with Traditional and Parameter-Free Models

Yang Liu, Yanpeng Zhao, Zhongjie Han, 2021, J. Chem. Inf. Model..

Insight into Shared Properties and Differential Dynamics and Specificity of Secretory Phospholipase A2 Family Members.

Chunhua Li, Weikang Gong, Yang Liu, 2021, The journal of physical chemistry. B.

Microstructural evolution in electroformed nickel shaped-charge liners with nano-sized grains undergone deformation at ultrahigh strain rate

Chunhua Li, W. Tian, Feng Yang, 2010 .

Computational modeling studies reveal the origin of the binding preference of 3‐(3,4‐di hydroisoquinolin‐2(1H)‐ylsulfonyl)benzoic acids for AKR1C3 over its isoforms

Chunhua Li, Xiaotian Kong, Xiaolin Cheng, 2022, Protein science : a publication of the Protein Society.

Identification of coagulation-associated subtypes of lung adenocarcinoma and establishment of prognostic models.

Chunhua Li, Xiaoli Wang, Jianjun Tan, 2023, Mathematical biosciences and engineering : MBE.

Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification

Chunhua Li, Weikang Gong, Xueqing Deng, 2020, BMC Bioinformatics.

Persistent spectral simplicial complex-based machine learning for chromosomal structural analysis in cellular differentiation

Kelin Xia, Chunhua Li, Weikang Gong, 2022, Briefings Bioinform..

Integrating multimeric threading with high-throughput experiments for structural interactome of Escherichia coli

Yang Zhang, Chunhua Li, Aysam Guerler, 2020, bioRxiv.

Allosteric Mechanism of Human Mitochondrial Phenylalanyl-tRNA Synthetase: An Atomistic MD Simulation and a Mutual Information-Based Network Study.

Chunhua Li, Qiankun Wang, Jingmin Cheng, 2021, The journal of physical chemistry. B.

Study on functional sites in human multidrug resistance protein 1 (hMRP1)

Chunhua Li, Qurat-ul-ann Farooq, Zhongjie Han, 2021, Proteins.

Allosteric mechanism for SL RNA recognition by polypyrimidine tract binding protein RRM1: An atomistic MD simulation and network-based study.

Chunhua Li, Weikang Gong, Lei Chen, 2022, International journal of biological macromolecules.

Specific recognition between YTHDF3 and m6A‐modified RNA: An all‐atom molecular dynamics simulation study

Chunhua Li, Weikang Gong, Zhongjie Han, 2022, Proteins.

Identification of Microbe-Drug Association based on Weighted Profile and Collaborative Matrix Factorization

Chunhua Li, Guixiang Li, Zhu Ling-zhi, 2021, American Journal of Biochemistry and Biotechnology.

An ensemble approach to predict binding hotspots in protein-RNA interactions based on SMOTE data balancing and Random Grouping feature selection strategies

Chunhua Li, Weikang Gong, Tong Zhou, 2022, Bioinform..

An investigation into the allosteric mechanism of GPCR A2A adenosine receptor with trajectory-based information theory and complex network model

Chunhua Li, Qiankun Wang, Zhongjie Han, 2020, Journal of biomolecular structure & dynamics.

emPDBA: protein-DNA binding affinity prediction by combining features from binding partners and interface learned with ensemble regression model.

Chunhua Li, Weikang Gong, Tong Zhou, 2023, Briefings in Bioinformatics.

aPRBind: protein-RNA interface prediction by combining sequence and I-TASSER model-based structural features learned with convolutional neural networks

Yang Liu, Weikang Gong, Chunhua Li, 2020, Bioinform..

Molecular Dynamics Studies of the Inhibitor C34 Binding to the Wild-Type and Mutant HIV-1 gp41: Inhibitory and Drug Resistant Mechanism

Cunxin Wang, Chunhua Li, J. Tan, 2014, PloS one.

Identification of metal ion-binding sites in RNA structures using deep learning method

Yanpeng Zhao, Chunhua Li, Weikang Gong, 2023, Briefings Bioinform..

SNB‐PSSM: A spatial neighbor‐based PSSM used for protein–RNA binding site prediction

Chunhua Li, Weikang Gong, Yang Liu, 2021, Journal of molecular recognition : JMR.

Dynamic Insights into the Self-Activation Pathway and Allosteric Regulation of the Orphan G-Protein-Coupled Receptor GPR52

Jinsong Su, Chunhua Li, Jianping Hu, 2023, J. Chem. Inf. Model..