F. Davis

发表

Localization of protein‐binding sites within families of proteins

Andrej Sali, Dmitry Korkin, Fred P Davis, 2005, Protein science : a publication of the Protein Society.

A structural perspective on proteinprotein interactions

Robert B. Russell, Frank Alber, Fred P. Davis, 2004 .

A structural perspective on protein-protein interactions.

Frank Alber, Andrej Sali, Patrick Aloy, 2004, Current opinion in structural biology.

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

Terrence J. Sejnowski, Sean R. Eddy, Fred P. Davis, 2015, Neuron.

Cell type–specific genomics of Drosophila neurons

S. Eddy, F. Davis, G. L. Henry, 2012, Nucleic acids research.

Evolved Repression Overcomes Enhancer Robustness.

D. Stern, F. Davis, Ella Preger-Ben Noon, 2016, Developmental cell.

The optimal size of a globular protein domain: A simple sphere-packing model

A. Sali, Min-Yi Shen, F. Davis, 2005 .

NSF Workshop Report: Discovering General Principles of Nervous System Organization by Comparing Brain Maps across Species

Julie A. Harris, C. W. Ragsdale, W. Kristan, 2014, Brain, Behavior and Evolution.

Proteome-wide prediction of overlapping small molecule and protein binding sites using structure.

F. Davis, 2011, Molecular bioSystems.

Epigenomic landscapes of retinal rods and cones

Sean R Eddy, Serge Picard, Michael A. Beer, 2016, eLife.

Transcription Factors That Convert Adult Cell Identity Are Differentially Polycomb Repressed

S. Eddy, F. Davis, 2013, PloS one.

Phosphorylation at the interface.

F. Davis, 2011, Structure.

MODBASE, a database of annotated comparative protein structure models, and associated resources.

Conrad C. Huang, Ben M. Webb, Daniel M. Greenblatt, 2004, Nucleic acids research.

A genetic, genomic, and computational resource for exploring neural circuit function

Sean R. Eddy, Michael B. Reiser, Fred P. Davis, 2018, bioRxiv.

A genetic, genomic, and computational resource for exploring neural circuit function

Sean R. Eddy, Michael B. Reiser, Fred P. Davis, 2018, bioRxiv.

Structural Modeling of Protein Interactions by Analogy: Application to PSD-95

Frank Alber, Fred P. Davis, Andrej Sali, 2006, PLoS Comput. Biol..

MODBASE: a database of annotated comparative protein structure models and associated resources

Marc A. Martí-Renom, Francisco Melo, Narayanan Eswar, 2005, Nucleic Acids Res..

modbase, a database of annotated comparative protein structure models and associated resources

Marc A. Martí-Renom, Narayanan Eswar, Ursula Pieper, 2008, Nucleic acids research.

Nuclear Transcriptomes of the Seven Neuronal Cell Types That Constitute the Drosophila Mushroom Bodies

Josh Dubnau, Meng-Fu Maxwell Shih, Gilbert Lee Henry, 2018, G3: Genes, Genomes, Genetics.

NSF Workshop Report: Discovering General Principles of Nervous System Organization by Comparing Brain Maps across Species

Maik C. Stüttgen, Partha P. Mitra, Fred P. Davis, 2014, Brain, Behavior and Evolution.

The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures

Fred P. Davis, Andrej Sali, A. Sali, 2010, PLoS Comput. Biol..

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

Marc A. Martí-Renom, Joaquín Dopazo, Ursula Pieper, 2007, BMC Bioinformatics.

PIBASE: a comprehensive database of structurally defined protein interfaces

Fred P. Davis, Andrej Sali, A. Sali, 2005, Bioinform..

MODBASE, a database of annotated comparative protein structure models, and associated resources

Marc A. Martí-Renom, Conrad C. Huang, Thomas E. Ferrin, 2004, Nucleic Acids Res..

Gene expression analysis in the parvalbumin‐immunoreactive PV1 nucleus of the mouse lateral hypothalamus

F. Davis, Z. Mészár, M. Celio, 2011, The European journal of neuroscience.

Host–pathogen protein interactions predicted by comparative modeling

Narayanan Eswar, Andrej Sali, A. Sali, 2007, Protein science : a publication of the Protein Society.

Protein complex compositions predicted by structural similarity

Ursula Pieper, Fred P. Davis, Andrej Sali, 2006, Nucleic acids research.

DBAli tools: mining the protein structure space

Marc A. Martí-Renom, Joaquín Dopazo, Narayanan Eswar, 2007, Nucleic Acids Res..

Gene expression analysis in the mouse brainstem identifies Cart and Nesfatin as neuropeptides coexpressed in the Calbindin-positive neurons of the Nucleus papilio

F. Davis, M. Celio, F. Girard, 2020, Sleep.

A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas

Sean R. Eddy, Fred P. Davis, S. Eddy, 2009, Bioinform..

Odorant binding protein 69a connects social interaction to modulation of social responsiveness in Drosophila

F. Davis, Jon-Michael Knapp, Assa Bentzur, 2018, PLoS genetics.

A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas

S. Eddy, F. Davis, 2009, Bioinform..

Evolved Repression Overcomes Enhancer Robustness.

D. Stern, F. Davis, Ella Preger-Ben Noon, 2016, Developmental cell.