J. Segura

发表

Computational Tools and Databases for the Study and Characterization of Protein Interactions.

J. Segura, J. Pastor, N. Fernandez-Fuentes, 2012 .

3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations

José María Carazo, Carlos Oscar Sánchez Sorzano, Joan Segura, 2019, Bioinform..

Scipion web tools: Easy to use cryo‐EM image processing over the web

Carlos Oscar S Sorzano, Javier Vargas, Joan Segura, 2018, Protein science : a publication of the Protein Society.

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

Chenghua Shao, Jose M. Duarte, Christine Zardecki, 2019, Protein science : a publication of the Protein Society.

Structural insights into the ability of nucleoplasmin to assemble and chaperone histone octamers for DNA deposition

A. Velázquez‐Campoy, A. Muga, J. Segura, 2019, Scientific Reports.

RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies

Jose M. Duarte, S. Burley, J. Segura, 2022, Bioinform..

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Jose M. Duarte, Ben M. Webb, Sai J. Ganesan, 2022, Protein science : a publication of the Protein Society.

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning

Jose M. Duarte, Rachel Kramer Green, Ben M. Webb, 2022, Nucleic Acids Res..

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

David S. Goodsell, Zukang Feng, John D. Westbrook, 2020, Nucleic Acids Res..

Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data.

Emre Guney, Joan Planas-Iglesias, Narcis Fernandez-Fuentes, 2020, Journal of molecular biology.

3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling

Carlos Oscar S Sorzano, Joan Segura, Ruben Sanchez-Garcia, 2016, Biophysical journal.

Understanding Drivers of Variation and Predicting Variability Across Levels of Biological Organization.

J. Segura, N. Pinter-Wollman, Richard Gawne, 2021, Integrative and comparative biology.

BIPSPI+: Mining Type-Specific Datasets of Protein Complexes to Improve Protein Binding Site Prediction.

J. Segura, R. Sánchez-García, J. R. Macías, 2022, Journal of molecular biology.

BIPSPI: a method for the prediction of partner-specific protein–protein interfaces

José María Carazo, Carlos Oscar Sánchez Sorzano, Joan Segura, 2018, Bioinform..

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Daisuke Kihara, Keehyoung Joo, Daisuke Kuroda, 2016, Proteins.

RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D

Jose M. Duarte, Sai J. Ganesan, A. Sali, 2021, Protein science : a publication of the Protein Society.

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive

Jose M. Duarte, Alexander S. Rose, J. Westbrook, 2020, Journal of molecular biology.

RCSB Protein Data Bank 1D tools and services

John D. Westbrook, Stephen K. Burley, Jose M. Duarte, 2020, Bioinform..

RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Moddels Alongside the PDB Structures Enabled by Architectural Advances.

Jose M. Duarte, J. Westbrook, S. Burley, 2023, Journal of molecular biology.

RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB

Jose M. Duarte, J. Westbrook, S. Burley, 2021, Bioinform..

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

Oriol Fornes, Joan Planas-Iglesias, Jaume Bonet, 2016, Biochemical Society transactions.

Using neighborhood cohesiveness to infer interactions between protein domains

José María Carazo, Carlos Oscar Sánchez Sorzano, Patrick Aloy, 2015, Bioinform..

CAPS-DB: a structural classification of helix-capping motifs

Baldomero Oliva, Narcis Fernandez-Fuentes, Joan Segura, 2011, Nucleic Acids Res..

MicrographCleaner: a python package for cryo-EM micrograph cleaning using deep learning.

J M Carazo, Ruben Sanchez-Garcia, David Maluenda, 2020, Journal of structural biology.

MicrographCleaner: a python package for cryo-EM micrograph cleaning using deep learning

José María Carazo, Carlos Oscar S. Sorzano, Joan Segura, 2019, bioRxiv.

3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures

Joan Segura, Jose Maria Carazo, Ruben Sanchez-Garcia, 2017, Molecules.

Deep Consensus, a deep learning-based approach for particle pruning in cryo-electron microscopy

Carlos Oscar S Sorzano, Joan Segura, Ruben Sanchez-Garcia, 2018, IUCrJ.

RCSB Protein Data Bank: integrated searching and efficient access to macromolecular structure data from the PDB archive

Jose M. Duarte, Alexander S. Rose, J. Westbrook, 2021, Acta Crystallographica Section A Foundations and Advances.

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

Baldomero Oliva, Joan Segura, Joan Planas-Iglesias, 2014, Bioinform..

aGEM: an integrative system for analyzing spatial-temporal gene-expression information

José María Carazo, Natalia Jiménez-Lozano, Joan Segura, 2009, Bioinform..

Integrative and Comparative Biology

J. Segura, N. Pinter-Wollman, Richard Gawne, 2022 .

Flexible structural protein alignment by a sequence of local transformations

Richard C. Wilson, Jairo Rocha, Joan Segura, 2009, Bioinform..

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams

Pamela F. Jones, Joan Segura, Narcis Fernandez-Fuentes, 2011, BMC Bioinformatics.

Computational Tools and Databases for the Study and Characterization of Protein Interactions.

J. Segura, J. Pastor, N. Fernández-Fuentes, 2012 .

Structural insights into the ability of nucleoplasmin to assemble and chaperone histone octamers for DNA deposition

A. Velázquez‐Campoy, A. Muga, J. Segura, 2019, Scientific Reports.

Supporting Material 3 DIANA : 3 D Domain Interaction Analysis : A Toolbox for Quaternary Structure Modeling

J. Carazo, C. Sorzano, J. Segura, 2015 .

PCRPi-DB: a database of computationally annotated hot spots in protein interfaces

Joan Segura, Narcis Fernandez-Fuentes, J. Segura, 2010, Nucleic Acids Res..

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams

Pamela F. Jones, J. Segura, N. Fernández-Fuentes, 2011, BMC Bioinformatics.

Integrating human and murine anatomical gene expression data for improved comparisons

J. Carazo, J. Segura, J. R. Macías, 2012, Bioinform..