I. Sharakhov

M. Sharakhova, I. Sharakhov, F. Simard, 2011, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Arm-specific dynamics of chromosome evolution in malaria mosquitoes

M. Sharakhova, I. Sharakhov, Scotland C. Leman, 2011, BMC Evolutionary Biology.

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Matthew W. Hahn, Robert M. Waterhouse, Simo V. Zhang, 2020, BMC Biology.

Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis

Z. Tu, I. Sharakhov, N. Alexeev, 2020, bioRxiv.

Inversions and Gene Order Shuffling in Anopheles gambiae and A. funestus

Jeanne Romero-Severson, Maureen Hillenmeyer, R. Westerman, 2002, Science.

Molecular evolution of a gene cluster of serine proteases expressed in the Anopheles gambiae female reproductive tract

A. Tramontano, D. Raimondo, Francesco Baldini, 2011, BMC Evolutionary Biology.

Recent advances and future perspectives in vector-omics.

Z. Tu, I. Sharakhov, Austin Compton, 2020, Current opinion in insect science.

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Matthew W. Hahn, Simo V. Zhang, S. Koren, 2018, BMC Biology.

Genus-wide characterization of bumblebee genomes reveals variation associated with key ecological and behavioral traits of pollinators

Paul H. Williams, Matthew W. Hahn, Robert M. Waterhouse, 2020, bioRxiv.

Imaginal Discs – A New Source of Chromosomes for Genome Mapping of the Yellow Fever Mosquito Aedes aegypti

M. Sharakhova, Vladimir A Timoshevskiy, I. Sharakhov, 2011, PLoS neglected tropical diseases.

Comparative Analysis of the Global Transcriptome of Anopheles funestus from Mali, West Africa

Maureen Hillenmeyer, J. Ribeiro, N. Besansky, 2009, PloS one.

A standard cytogenetic map for Anopheles sinensis and chromosome arm homology between the subgenera Anopheles and Cellia

M. Sharakhova, I. Sharakhov, Q. Lan, 2014, Medical and veterinary entomology.

Structural divergence of chromosomes between malaria vectors Anopheles lesteri and Anopheles sinensis

M. Sharakhova, I. Sharakhov, A. Xia, 2016, Parasites & Vectors.

Mitotic-Chromosome-Based Physical Mapping of the Culex quinquefasciatus Genome

A. N. Naumenko, M. Sharakhova, Vladimir A Timoshevskiy, 2015, PloS one.

Progress in mapping the yellow fever mosquito genome.

M. Sharakhova, I. Sharakhov, 2013, Tsitologiia.

An Integrated Linkage, Chromosome, and Genome Map for the Yellow Fever Mosquito Aedes aegypti

M. Sharakhova, Vladimir A Timoshevskiy, I. Sharakhov, 2013, PLoS neglected tropical diseases.

Fluorescent in situ Hybridization on Mitotic Chromosomes of Mosquitoes

M. Sharakhova, Vladimir A Timoshevskiy, I. Sharakhov, 2012, Journal of visualized experiments : JoVE.

A New Chromosomal Phylogeny Supports the Repeated Origin of Vectorial Capacity in Malaria Mosquitoes of the Anopheles gambiae Complex

Z. Tu, I. Sharakhov, M. Kamali, 2012, PLoS pathogens.

Chromosome evolution in malaria mosquitoes

M. Sharakhova, I. Sharakhov, 2010, Russian Journal of Genetics.

High‐resolution cytogenetic map for the African malaria vector Anopheles gambiae

M. Sharakhova, I. Sharakhov, P. George, 2010, Insect molecular biology.

Molecular organization of heterochromatin in malaria mosquitoes of the Anopheles maculipennis subgroup.

M. Sharakhova, I. Sharakhov, O. Grushko, 2009, Gene.

Molecular karyotyping of the 2La inversion in Anopheles gambiae.

J. Kayondo, N. Besansky, I. Sharakhov, 2007, The American journal of tropical medicine and hygiene.

Retrogene Duplication and Expression Patterns Shaped by the Evolution of Sex Chromosomes in Malaria Mosquitoes

M. Long, E. Betrán, I. Sharakhov, 2022, Genes.

Mapping Genomic Scaffolds to Chromosomes Using Laser Capture Microdissection in Application to Hawaiian Picture-Winged Drosophila

P. Michalak, I. Sharakhov, P. George, 2017, Cytogenetic and Genome Research.

Cytogenetic analysis of Anopheles ovengensis revealed high structural divergence of chromosomes in the Anopheles nili group.

M. Sharakhova, I. Sharakhov, F. Simard, 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits

Paul H. Williams, Robert M. Waterhouse, Seth M. Barribeau, 2020, Molecular biology and evolution.

RELEASE OF MITOTIC DESCENDANTS BY GIANT CELLS FROM IRRADIATED BURKITT'S LYMPHOMA CELL LINES

T. Illidge, M. Cragg, B. Fringes, 2000, Cell biology international.

Genomic, chromosomal, and ecological differentiation between the cryptic Eurasian malaria vector-species Anopheles messeae and Anopheles daciae

E. Baricheva, A. N. Naumenko, M. Sharakhova, 2019 .

Protocols for Cytogenetic Mapping of Arthropod Genomes

I. Sharakhov, 2014 .

A standard cytogenetic photomap for the mosquito Anopheles stephensi (Diptera: Culicidae): application for physical mapping.

M. Sharakhova, I. Sharakhov, A. Xia, 2006, Journal of medical entomology.

Variability and Structure of the Repetitive Region of the Major Royal Jelly Protein Gene mrjp3 in Honeybee Apis mellifera of Different Evolutionary Branches

I. Sharakhov, A. Kucher, N. Babushkina, 2018, Journal of Molecular Biology Research.

A Comprehensive Characterization of the Honeybees in Siberia (Russia)

I. Sharakhov, O. L. Konusova, N. V. Ostroverkhova, 2016 .

Correction: Mitotic-Chromosome-Based Physical Mapping of the Culex quinquefasciatus Genome

A. N. Naumenko, M. Sharakhova, I. Sharakhov, 2015, PloS one.

A major genetic locus controlling natural Plasmodium falciparum infection is shared by East and West African Anopheles gambiae

M. Riehle, J. Koella, I. Sharakhov, 2007, Malaria Journal.

Phylogenomics revealed migration routes and adaptive radiation timing of Holarctic malaria vectors of the Maculipennis group

D. Karagodin, E. Baricheva, A. N. Naumenko, 2022, bioRxiv.

An integrated chromosome map of microsatellite markers and inversion breakpoints for an Asian malaria mosquito, Anopheles stephensi.

E. Baricheva, M. Sharakhova, Z. Tu, 2011, The Journal of heredity.

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes

Lauren A. Assour, Simo V. Zhang, S. Koren, 2016, Proceedings of the National Academy of Sciences.

Anopheles mosquitoes reveal new principles of 3D genome organization in insects

Robert M. Waterhouse, Chunhong Mao, P. Belokopytova, 2020, Nature Communications.

Genomic composition and evolution of Aedes aegypti chromosomes revealed by the analysis of physically mapped supercontigs

Chunhong Mao, M. Sharakhova, Z. Tu, 2014, BMC Biology.

Chromosome phylogenies of malaria mosquitoes.

I. Sharakhov, 2013, Tsitologiia.

Extensive introgression in a malaria vector species complex revealed by phylogenomics

Xiaofang Jiang, Scott J. Emrich, Yi-Chieh Wu, 2015, Science.

Improved reference genome of Aedes aegypti informs arbovirus vector control

Sergey Koren, Adam M. Phillippy, Li Zhao, 2018, Nature.

The Beginning of the End: A Chromosomal Assembly of the New World Malaria Mosquito Ends with a Novel Telomere

S. Deschamps, Chunhong Mao, V. Llaca, 2020, bioRxiv.

Genome variation and population structure among 1,142 mosquitoes of the African malaria vector species Anopheles gambiae and Anopheles coluzzii

Daniel R. Schrider, Anna E. Jeffreys, D. Kwiatkowski, 2019, bioRxiv.

Linear and spatial organization of polytene chromosomes of the African malaria mosquito Anopheles funestus.

C. Mbogo, M. Sharakhova, I. Sharakhov, 2001, Genetics.

The Role of Chromosome–Nuclear Envelope Attachments in 3D Genome Organization

A. Onufriev, I. Sharakhov, G. Artemov, 2018, Biochemistry (Moscow).

Molecular characterization and genetic authentication assay for Anopheles ‘hemocyte-like’ cell lines 4a-3A and 4a-3B

M. Riehle, K. Eiglmeier, I. Sharakhov, 2022, Parasites & vectors.

Patterns of genetic differentiation imply distinct evolutionary histories of the sibling mosquito species Anopheles messeae and Anopheles daciae in Eurasia

E. Baricheva, M. Sharakhova, I. Sharakhov, 2022, bioRxiv.

Next-Generation Sequencing Reveals Recent Horizontal Transfer of a DNA Transposon between Divergent Mosquitoes

Yupu Diao, Yumin Qi, Ai Xia, 2011, PloS one.

Structural divergence of chromosomes between malaria vectors Anopheles lesteri and Anopheles sinensis

M. Sharakhova, I. Sharakhov, A. Xia, 2016, Parasites & Vectors.

2D and 3D Chromosome Painting in Malaria Mosquitoes

I. Sharakhov, P. George, Atashi Sharma, 2014, Journal of visualized experiments : JoVE.

Asymmetric Phenotypes of Sterile Hybrid Males From Reciprocal Crosses Between Species of the Anopheles gambiae Complex

James M. Hodge, I. Sharakhov, Jiangtao Liang, 2021, Frontiers in Ecology and Evolution.

Strong interactions between highly dynamic lamina-associated domains and the nuclear envelope stabilize the 3D architecture of Drosophila interphase chromatin

A. Onufriev, I. Sharakhov, N. A. Kinney, 2022, bioRxiv.

Chromosome–nuclear envelope attachments affect interphase chromosome territories and entanglement

A. Onufriev, I. Sharakhov, N. A. Kinney, 2018, Epigenetics & Chromatin.

The Development of Cytogenetic Maps for Malaria Mosquitoes

M. Sharakhova, I. Sharakhov, G. Artemov, 2018, Insects.

De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

K. Eiglmeier, I. Sharakhov, Saorin Kim, 2018, BMC Genomics.

Increased production of piRNAs from euchromatic clusters and genes in Anopheles gambiae compared with Drosophilamelanogaster

I. Sharakhov, E. Brasset, C. Vaury, 2015, Epigenetics & Chromatin.

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi

Xiaofang Jiang, Phillip George, Shirley Luckhart, 2014, Genome Biology.

Genome Landscape and Evolutionary Plasticity of Chromosomes in Malaria Mosquitoes

Jeffrey A. Bailey, Ai Xia, Maria V. Sharakhova, 2010, PloS one.

Reconstructing Ancestral Autosomal Arrangements in the Anopheles gambiae Complex

Ai Xia, Maria V. Sharakhova, Igor V. Sharakhov, 2008, J. Comput. Biol..

Breakpoint structure reveals the unique origin of an interspecific chromosomal inversion (2La) in the Anopheles gambiae complex.

Frédéric Simard, J. Kayondo, M. Sharakhova, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control

Sergey Koren, Li Zhao, Sanjit S. Batra, 2017, bioRxiv.

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

Timothy B. Stockwell, S. Koren, N. Bergman, 2017, bioRxiv.

Three-dimensional Organization of Polytene Chromosomes in Somatic and Germline Tissues of Malaria Mosquitoes

A. Onufriev, I. Sharakhov, P. George, 2020, Cells.

Chromosome evolution in malaria mosquitoes inferred from physically mapped genome assemblies

Maria V. Sharakhova, Igor V. Sharakhov, Gleb N. Artemov, 2016, J. Bioinform. Comput. Biol..

[Structure of blocks of pericentromeric heterochromatin at chromosomes 3 and 4 in pseudonurse cells from larvae of Drosophila melanogaster line OTU].

E. Baricheva, I. Sharakhov, P. Fisher, 1997, Doklady Akademii nauk.

DNA from Drosophila melanogaster beta-heterochromatin binds specifically to nuclear lamins in vitro and the nuclear envelope in situ.

N. Stuurman, I. Sharakhov, M. Berrios, 1996, Gene.

[Beta-heterochromatin in Drosophila: molecular organization and function. Molecular biological analysis of a MAR/SAR DNA sequence in centromere heterochromatin of Drosophila melanogaster].

I. Sharakhov, P. Fisher, I. Borisevich, 1996, Genetika.

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes

Christopher J. Mitchell, Dhanashree S. Kelkar, Srikanth S. Manda, 2017, Genome research.

Evolutionary Dynamics of the Ty3/Gypsy LTR Retrotransposons in the Genome of Anopheles gambiae

G. Escaramís, L. Bassaganyas, C. Tornador, 2011, PloS one.

Physical Mapping of the Anopheles (Nyssorhynchus) darlingi Genomic Scaffolds

W. Tadei, M. Sharakhova, I. Sharakhov, 2021, Insects.

The Physical Genome Mapping of Anopheles albimanus Corrected Scaffold Misassemblies and Identified Interarm Rearrangements in Genus Anopheles

Xiaofang Jiang, M. Sharakhova, Z. Tu, 2016, G3: Genes, Genomes, Genetics.

Visualization of the Linear and Spatial Organization of Chromosomes in Mosquitoes.

M. Sharakhova, I. Sharakhov, Jiangtao Liang, 2022, Cold Spring Harbor protocols.

Physical Genome Mapping Using Fluorescence In Situ Hybridization with Mosquito Chromosomes.

M. Sharakhova, Vladimir A Timoshevskiy, I. Sharakhov, 2018, Methods in molecular biology.

Comparative physical genome mapping of malaria vectors Anopheles sinensis and Anopheles gambiae

Jing Wang, Yun Wei, Jun Cao, 2017, Malaria Journal.

A physical map for an Asian malaria mosquito, Anopheles stephensi.

Ai Xia, M. Sharakhova, Z. Tu, 2010, The American journal of tropical medicine and hygiene.

A Standard Cytogenetic Photomap for the Mosquito Anopheles stephensi (Diptera: Culicidae): Application for Physical Mapping

Ai Xia, Maria V. Sharakhova, Igor V. Sharakhov, 2006 .

A microsatellite map of the African human malaria vector Anopheles funestus.

N. Besansky, I. Sharakhov, G. Yan, 2004, The Journal of heredity.

The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level

A. Onufriev, I. Sharakhov, I. Tolokh, 2022, bioRxiv.

Structural Variation of the X Chromosome Heterochromatin in the Anopheles gambiae Complex

M. Sharakhova, I. Sharakhov, N. A. Kinney, 2020, Genes.

Organization and evolution of heterochromatin in malaria mosquitoes

M. Sharakhova, I. Sharakhov, 2010, Russian Journal of Genetics.

Leveraging evolutionary relationships to improve Anopheles genome assemblies

Sergey Koren, Adam M. Phillippy, Cedric Chauve, 2018, bioRxiv.

Linked-read sequencing identifies abundant microinversions and introgression in the arboviral vector Aedes aegypti

D. Neafsey, M. Sharakhova, Z. Tu, 2020, BMC Biology.

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation

S. Koren, N. Bergman, A. Phillippy, 2017, bioRxiv.

Molecular characterization and evolution of a gene family encoding male-specific reproductive proteins in the African malaria vector Anopheles gambiae

D. Masiga, D. W. Rogers, Francesco Baldini, 2011, BMC Evolutionary Biology.

Post-integration behavior of a Minos transposon in the malaria mosquito Anopheles stephensi

F. Catteruccia, A. Crisanti, M. Sharakhova, 2007, Molecular Genetics and Genomics.

A male-determining factor in the mosquito Aedes aegypti

J. Biedler, Y. Qi, M. Sharakhova, 2015, Science.

Insights into the Preservation of the Homomorphic Sex-Determining Chromosome of Aedes aegypti from the Discovery of a Male-Biased Gene Tightly Linked to the M-Locus

M. Sharakhova, Z. Adelman, Z. Tu, 2014, Genome biology and evolution.

A molecular and cytogenetic analysis of λ 20p7 fragment DNA from the proximal β-heterochromatin of Drosophila melanogaster

A. G. Shilov, E. Baricheva, I. Sharakhov, 1993 .

Reorganization of the nuclear architecture in the Drosophila melanogaster Lamin B mutant lacking the CaaX box

I. Sharakhov, S. Bondarenko, 2020, Nucleus.

Improving the population genetics toolbox for the study of the African malaria vector Anopheles nili: microsatellite mapping to chromosomes

M. Sharakhova, I. Sharakhov, F. Simard, 2011, Parasites & Vectors.

Reconstructing an Inversion History in the Anopheles Gambiae Complex

Ai Xia, Maria V. Sharakhova, Igor V. Sharakhov, 2007, RECOMB-CG.

A microsatellite physical map of the African human malaria vector Anopheles funestus

N. Besansky, I. Sharakhov, G. Yan, 2003 .

Cryptic Genetic Diversity within the Anopheles nili group of Malaria Vectors in the Equatorial Forest Area of Cameroon (Central Africa)

I. Sharakhov, F. Simard, C. Antonio-Nkondjio, 2013, PloS one.

Tissue-specific features of the X chromosome and nucleolus spatial dynamics in a malaria mosquito, Anopheles atroparvus

I. Sharakhov, S. Bondarenko, G. Artemov, 2017, PloS one.

A standard photomap of ovarian nurse cell chromosomes and inversion polymorphism in Anopheles beklemishevi

M. Sharakhova, I. Sharakhov, G. Artemov, 2018, Parasites & Vectors.

Chromosome Localization of the λ20p1.4 clone of the Drosophila melanogaster Nuclear Lamina DNA in the melanogaster Species Subgroup of the Genus Drosophila (Sophophora)

I. Sharakhov, O. Grushko, V. N. Stegnii, 2002, Russian Journal of Genetics.

High-throughput Physical Mapping of Chromosomes using Automated in situ Hybridization

M. Sharakhova, I. Sharakhov, P. George, 2012, Journal of visualized experiments : JoVE.

Premeiotic and meiotic failures associate with hybrid male sterility in the 2 Anopheles gambiae complex 3 Short title : The cellular basis of hybrid male sterility in malaria mosquitoes 4 5

I. Sharakhov, Jiangtao Liang, 2021 .

Chromosomal localization of actin genes in the malaria mosquito Anopheles darlingi

W. Tadei, M. Sharakhova, I. Sharakhov, 2013, Medical and Veterinary Entomology.

Toxicological assays for testing effects of an epigenetic drug on development, fecundity and survivorship of malaria mosquitoes.

I. Sharakhov, Atashi Sharma, T. Anderson, 2015, Journal of visualized experiments : JoVE.

Identification of microsatellite markers in the red flour beetle, Tribolium castaneum

I. Sharakhov, G. Yan, A. Pai, 2003 .

Comparative physical genome mapping of malaria vectors Anopheles sinensis and Anopheles gambiae

Cong-cong Wang, I. Sharakhov, D. Shen, 2017, Malaria Journal.

A standard photomap of the ovarian nurse cell chromosomes for the dominant malaria vector in Europe and Middle East Anopheles sacharovi

M. Sharakhova, I. Sharakhov, S. Bondarenko, 2018, Malaria Journal.

Phylogenomics revealed migration routes and adaptive radiation timing of Holarctic malaria mosquito species of the Maculipennis Group

D. Karagodin, E. Baricheva, A. N. Naumenko, 2023, BMC Biology.

Partial-arm translocations in evolution of malaria mosquitoes revealed by high-coverage physical mapping of the Anopheles atroparvus genome

A. N. Naumenko, M. Sharakhova, I. Sharakhov, 2018, BMC Genomics.

Premeiotic and meiotic failures lead to hybrid male sterility in the Anopheles gambiae complex

I. Sharakhov, Jiangtao Liang, 2019, Proceedings of the Royal Society B.

Premeiotic and meiotic failures associate with hybrid male sterility in the Anopheles gambiae complex

I. Sharakhov, Jiangtao Liang, 2018, bioRxiv.

Genetic diversity of honeybees in different geographical regions of Siberia

I. Sharakhov, A. Kucher, O. L. Konusova, 2017 .

Isolation and characterization of trinucleotide microsatellites in African malaria mosquito Anopheles funestus

I. Sharakhov, G. Yan, C. Mbogo, 2001 .

Extracting structural folding pattern of chromatin using chromatin condensation data using HiCNN[12] or HiCNN2[13] approaches Metrics for evaluation: Comparing the result’s mean squared error and Pearson’s correlation coefficients with experimental high-resolution Hi-C data

R. Socher, Yann LeCun, J. Denker, 2022 .

Cellular mechanisms regulating synthetic sex ratio distortion in the Anopheles gambiae germline

Nace Kranjc, Mariana Wunderlich, Chrysanthi Taxiarchi, 2020, Pathogens and global health.

Patterns of genetic differentiation imply distinct phylogeographic history of the mosquito species Anopheles messeae and Anopheles daciae in Eurasia

M. Sharakhova, I. Sharakhov, G. Artemov, 2023, Molecular ecology.

Chromosome–nuclear envelope attachments affect interphase chromosome territories and entanglement

A. Onufriev, I. Sharakhov, N. A. Kinney, 2018, Epigenetics & Chromatin.

High‐resolution cytogenetic map for the African malaria vector Anopheles gambiae

M. Sharakhova, I. Sharakhov, Phillip George, 2010, Insect molecular biology (Print).

A physical map for an Asian malaria mosquito, Anopheles stephensi.

M. Sharakhova, Z. Tu, I. Sharakhov, 2010, The American journal of tropical medicine and hygiene.

Improving the population genetics toolbox for the study of the African malaria vector Anopheles nili: microsatellite mapping to chromosomes

M. Sharakhova, I. Sharakhov, F. Simard, 2011, Parasites & Vectors.

Premeiotic and meiotic failures lead to hybrid male sterility in the Anopheles 1

I. Sharakhov, Jiangtao Liang, 2019 .

Genetic diversity of the African malaria vector Anopheles gambiae

Daniel R. Schrider, Christina M. Bergey, Anna E. Jeffreys, 2017, Nature.

The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit flies

A. Onufriev, I. Sharakhov, I. Tolokh, 2024, Epigenetics & chromatin.

The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit fly

A. Onufriev, I. Sharakhov, I. Tolokh, 2022, bioRxiv.

Toxicological assays for testing effects of an epigenetic drug on development, fecundity and survivorship of malaria mosquitoes.

I. Sharakhov, Atashi Sharma, T. Anderson, 2015, Journal of visualized experiments : JoVE.

Cryptic Genetic Diversity within the Anopheles nili group of Malaria Vectors in the Equatorial Forest Area of Cameroon (Central Africa)

I. Sharakhov, F. Simard, C. Antonio-Nkondjio, 2013, PloS one.