M. Lizio

发表

Gateways to the FANTOM5 promoter level mammalian expression atlas

Derek W Wright, T. Meehan, A. Diehl, 2015, Genome Biology.

An atlas of human long non-coding RNAs with accurate 5′ ends

Jordan A. Ramilowski, J. Gough, C. Hon, 2017, Nature.

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Thomas J. Ha, Kelly J. Morris, Louise N. Winteringham, 2015, Science.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Martin S. Taylor, Denis C. Bauer, Andrew M. Waterhouse, 2009, Nature Genetics.

Systematic analysis of transcription start sites in avian development

Piero Carninci, Y. Hayashizaki, T. Lassmann, 2017, PLoS biology.

An integrated expression atlas of miRNAs and their promoters in human and mouse

Jay W. Shin, Thomas J. Ha, Louise N. Winteringham, 2017, Nature Biotechnology.

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

Andrew M. Waterhouse, Piero Carninci, Y. Hayashizaki, 2009, Genome Biology.

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, bioRxiv.

JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states

C. Hon, T. Umehara, B. Kaczkowski, 2017, bioRxiv.

Functional annotation of human long noncoding RNAs via molecular phenotyping.

Boris Lenhard, Lusy Handoko, Piero Carninci, 2020, Genome research.

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

Howard Y. Chang, Martin S. Taylor, Jay W. Shin, 2020 .

Functional annotation of human long noncoding RNAs via molecular phenotyping

Howard Y. Chang, Martin S. Taylor, Jay W. Shin, 2019, bioRxiv.

Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC

Piero Carninci, Y. Hayashizaki, B. Kaczkowski, 2017, Molecular Cancer Research.

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

Piero Carninci, Y. Hayashizaki, Harukazu Suzuki, 2015, Front. Genet..

FANTOM5 CAGE profiles of human and mouse samples

Jay W. Shin, Thomas J. Ha, Kelly J. Morris, 2017, Scientific Data.

Comparative transcriptomics of primary cells in vertebrates

Martin S. Taylor, Jordan A. Ramilowski, Robert S. Young, 2020, Genome research.

Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis

Piero Carninci, Y. Hayashizaki, T. Lassmann, 2016, Scientific Reports.

DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C

Jay W. Shin, Piero Carninci, Y. Hayashizaki, 2016, Journal of Cell Science.

Characterisation of C101248: A novel selective THIK-1 channel inhibitor for the modulation of microglial NLRP3-inflammasome

Justin J. W. Powell, E. Kavanagh, D. Brough, 2022, Neuropharmacology.

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease

Piero Carninci, Yoshihide Hayashizaki, Joost Boele, 2014, Proceedings of the National Academy of Sciences.

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing.

Piero Carninci, Y. Hayashizaki, Harukazu Suzuki, 2010, BioTechniques.

A draft network of ligand–receptor-mediated multicellular signalling in human

Piero Carninci, Hideya Kawaji, Alistair R. R. Forrest, 2015, Nature Communications.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2021, Nature Communications.

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2014, Genome research.

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

Robert S. Young, J. Blake, T. Meehan, 2015, PLoS biology.

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Finn Drabløs, David J. Arenillas, Piero Carninci, 2016, Nucleic Acids Res..

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

Yoshihide Hayashizaki, Hideya Kawaji, Marina Lizio, 2014, Nature Biotechnology.

Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human

Jordan A. Ramilowski, B. Rost, Piero Carninci, 2016, Nature communications.

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

Norio Kobayashi, Piero Carninci, Yoshihide Hayashizaki, 2020, Nucleic Acids Res..

Application of a CAGE Method to an Avian Development Study.

Marina Lizio, Oleg Gusev, Ruslan Deviatiiarov, 2017, Methods in molecular biology.

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium.

Jay W. Shin, Piero Carninci, Y. Hayashizaki, 2015, Cell reports.

FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies

Piero Carninci, Hideya Kawaji, Shuhei Noguchi, 2017, Scientific Data.

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, Scientific Data.

Automated Workflow for Preparation of cDNA for Cap Analysis of Gene Expression on a Single Molecule Sequencer

Piero Carninci, Y. Hayashizaki, T. Lassmann, 2012, PloS one.

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki, 2010, Nucleic Acids Res..

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2016, Database J. Biol. Databases Curation.

Human genome meeting 2016

Kumar Kshitij Patel, A. Pang, W. Chung, 2016, Human Genomics.

Monitoring transcription initiation activities in rat and dog

Piero Carninci, Yoshihide Hayashizaki, Hideya Kawaji, 2017, Scientific Data.

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

Akira Hasegawa, Piero Carninci, Yoshihide Hayashizaki, 2018, Nucleic Acids Res..

Characterisation of C101248: A novel selective THIK-1 channel inhibitor for the modulation of microglial NLRP3-inflammasome

Justin J. W. Powell, E. Kavanagh, D. Brough, 2022, Neuropharmacology.

Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human

Jordan A. Ramilowski, B. Rost, Piero Carninci, 2016, Nature Communications.

Human genome meeting 2016

A. Pang, W. Chung, J. Lupski, 2016, Human Genomics.

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

Carsten O. Daub, Vladimir B. Bajic, Tom C. Freeman, 2016, bioRxiv.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

Y. Hayashizaki, N. Bertin, A. Forrest, 2014 .

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping 1

Howard Y. Chang, Martin S. Taylor, Jay W. Shin, 2019 .

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2022 .

FANTOM5 CAGE profiles of human and mouse samples.

Jay W. Shin, Thomas J. Ha, Kelly J. Morris, 2017, Scientific data.

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

Piero Carninci, Y. Hayashizaki, T. Lassmann, 2017, Scientific Data.

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

Piero Carninci, Y. Hayashizaki, K. Schroder, 2009, Genome Biology.

Human genome meeting 2016

Kumar Kshitij Patel, Jose Maria Gonzalez-Izarzugaza, A. Pang, 2016, Human Genomics.

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

Piero Carninci, Y. Hayashizaki, Harukazu Suzuki, 2015, Front. Genet..

Comparative transcriptomics of primary cells in vertebrates

Martin S. Taylor, Jordan A. Ramilowski, Robert S. Young, 2020, Genome Research.

Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties

C. Hon, B. Kaczkowski, Aki Minoda, 2023, BMC Genomics.

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

Carsten O. Daub, Vladimir B. Bajic, Tom C. Freeman, 2016, bioRxiv.

Edinburgh Research Explorer The FANTOM web resource

Y. Hayashizaki, A. Forrest, H. Kawaji, 2022 .

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Martin S. Taylor, Denis C. Bauer, Ariel S. Schwartz, 2009, Nature Genetics.

A promoter-level mammalian expression atlas

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2014, Nature.

Differential contribution of THIK-1 K+ channels and P2X7 receptors to ATP-mediated neuroinflammation by human microglia

M. Lizio, P. Fidzinski, B. Ossola, 2024, Journal of neuroinflammation.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, Kelly J. Hitchens, J. Harrow, 2021 .