S. Subramani

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Cloning and analysis of a gene involved in DNA repair and recombination, the rad1 gene of Schizosaccharomyces pombe

P. Sunnerhagen, B. Seaton, A. Nasim, 1990, Molecular and cellular biology.

The Schizosaccharomyces pombe rad1 gene consists of three exons and the cDNA sequence is partially homologous to the Ustilago maydis REC1 cDNA.

P. Sunnerhagen, S. Subramani, K. E. Long, 1994, Gene.

Firefly luciferase as a tool in molecular and cell biology.

S Subramani, S. Subramani, S. Gould, 1988, Analytical biochemistry.

Import of peroxisomal matrix and membrane proteins.

S Subramani, W B Snyder, W. B. Snyder, 2000, Annual review of biochemistry.

Hus 1 p , a conserved fission yeast checkpoint protein , interacts with Rad 1 p and is phosphorylated in response to DNA damage

S. Subramani, T. Enoch, K. Knudsen, 2013 .

A novel, cleavable peroxisomal targeting signal at the amino‐terminus of the rat 3‐ketoacyl‐CoA thiolase.

S. Subramani, R. Rachubinski, S. Gould, 1991, The EMBO journal.

A unified nomenclature for peroxisome biogenesis factors

H. Moser, D. Valle, H. Tabak, 1996, The Journal of cell biology.

Peroxisome matrix and membrane protein biogenesis

S. Subramani, Changle Ma, 2009, IUBMB life.

Roles of Pichia pastoris Uvrag in vacuolar protein sorting and the phosphatidylinositol 3-kinase complex in phagophore elongation in autophagy pathways

S. Subramani, Ravi Manjithaya, J. Farré, 2010, Autophagy.

Peroxisome size provides insights into the function of autophagy-related proteins.

S. Subramani, J. Farré, T. Y. Nazarko, 2009, Molecular biology of the cell.

A unified nomenclature for yeast autophagy-related genes.

Daniel J Klionsky, Yasuyoshi Sakai, Marten Veenhuis, 2003, Developmental cell.

Double-strand break-induced recombination in eukaryotes.

S. Subramani, F. Osman, Fekret Osman, 1998, Progress in nucleic acid research and molecular biology.

Cytosol-dependent peroxisomal protein import in a permeabilized cell system

S. Subramani, M. Wendland, 1993, The Journal of cell biology.

Firefly luciferase is targeted to peroxisomes in mammalian cells.

S. Gould, S. Subramani, M. Deluca, 1987, Proceedings of the National Academy of Sciences of the United States of America.

Diverse peroxisome proliferator-activated receptors bind to the peroxisome proliferator-responsive elements of the rat hydratase/dehydrogenase and fatty acyl-CoA oxidase genes but differentially induce expression.

J. Capone, S. Subramani, R. Rachubinski, 1993, Proceedings of the National Academy of Sciences of the United States of America.

How proteins penetrate peroxisomes

Suresh Subramani, S. Subramani, R. Rachubinski, 1995, Cell.

20 - The Role of Shuttling Targeting Signal Receptors and Heat‐Shock Proteins in Peroxisomal Matrix Protein Import

S. Subramani, S. Léon, 2007 .

The cytosolic and membrane components required for peroxisomal protein import

S. Subramani, S. R. Terlecky, W. M. Nuttley, 1996, Experientia.

Import of Proteins into Peroxisomes

Soojin Lee, S. Subramani, V. Dammai, 2002 .

The Human Peroxisomal Targeting Signal Receptor, Pex5p, Is Translocated into the Peroxisomal Matrix and Recycled to the Cytosol

S. Subramani, V. Dammai, 2001, Cell.

Components involved in peroxisome import, biogenesis, proliferation, turnover, and movement.

S. Subramani, 1998, Physiological reviews.

Biogenesis of Peroxisomes

S. Subramani, 1998 .

Identification of a human PTS1 receptor docking protein directly required for peroxisomal protein import.

S. Subramani, S. R. Terlecky, M. Fransen, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Protein Translocation into Peroxisomes*

S. Subramani, 1996, The Journal of Biological Chemistry.

Convergence of model systems for peroxisome biogenesis.

S. Subramani, 1996, Current opinion in cell biology.

The Pichia pastoris peroxisomal protein PAS8p is the receptor for the C‐terminal tripeptide peroxisomal targeting signal.

S. Subramani, S. R. Terlecky, D. McCollum, 1995, The EMBO journal.

Human peroxisomal targeting signal-1 receptor restores peroxisomal protein import in cells from patients with fatal peroxisomal disorders

E. Wiemer, U. Francke, S. Subramani, 1995, The Journal of cell biology.

Import of stably folded proteins into peroxisomes.

S. Subramani, P. Walton, P. E. Hill, 1995, Molecular biology of the cell.

Rallying the Exocyst as an Autophagy Scaffold

S. Subramani, J. Farré, 2011, Cell.

OXPHOS deficiencies affect peroxisome proliferation by downregulating genes controlled by the SNF1 signaling pathway.

S. Subramani, J. Farré, Krypton Carolino, 2022, eLife.

Emerging role of the endoplasmic reticulum in peroxisome biogenesis

S. Subramani, Gaurav Agrawal, 2013, Front. Physiol..

Role of PEX5 ubiquitination in maintaining peroxisome dynamics and homeostasis

Wei Wang, S. Subramani, 2017, Cell cycle.

Assays to Monitor Pexophagy in Yeast.

S. Subramani, W. Wang, 2017, Methods in enzymology.

Pexophagy: The Selective Degradation of Peroxisomes

S. Subramani, A. Till, Ronak Lakhani, 2012, International journal of cell biology.

Protein import into peroxisomes and biogenesis of the organelle.

S. Subramani, Suresh Subramani, 1993, Annual review of cell biology.

Hus1p, a conserved fission yeast checkpoint protein, interacts with Rad1p and is phosphorylated in response to DNA damage

S. Subramani, T. Enoch, K. Knudsen, 1998, The EMBO journal.

A balancing act for autophagin.

S. Subramani, A. Till, 2010, The Journal of clinical investigation.

Identification of a new eph-related receptor tyrosine kinase gene from mouse and chicken that is developmentally regulated and encodes at least two forms of the receptor.

S. Subramani, E. Pasquale, F. Sajjadi, 1991, The New biologist.

Peroxisome turnover by micropexophagy: an autophagy-related process.

S. Subramani, J. Farré, Jean-Claude Farré, 2004, Trends in cell biology.

Balancing the Opposing Principles That Govern Peroxisome Homeostasis.

S. Subramani, J. Farré, Shanmugam Mahalingam, 2020, Trends in biochemical sciences.

Turnover of Organelles by Autophagy in Yeast This Review Comes from a Themed Issue on Membranes and Organelles Edited Atg9 and Its Cycling System the Cvt Pathway Er-phagy

S. Subramani, M. Thumm, J. Farré, 2022 .

S. Subramani, A. Sibirny, J. Farré, 2007, Autophagy.

Hidden features of the malaria vector mosquito, Anopheles stephensi, revealed by a high-quality reference genome

A. James, J. J. Emerson, A. Adolfi, 2020, bioRxiv.

Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

A. James, J. J. Emerson, A. Adolfi, 2022, BMC Biology.

Redox-regulated Cargo Binding and Release by the Peroxisomal Targeting Signal Receptor, Pex5*

Soumitra Polley, S. Subramani, D. Hagstrom, 2013, The Journal of Biological Chemistry.

Activity versus peroxisomal targeting of PerCR.

M. Baker, S. Subramani, M. Baker, 2008, Structure.

AIM/LIR-based fluorescent sensors—new tools to monitor mAtg8 functions

S. Subramani, Katarzyna Zientara-Rytter, 2018, Autophagy.

Visualization of the Peroxisomal Compartment in Living Mammalian Cells: Dynamic Behavior and Association with Microtubules

T. Deerinck, Mark Ellisman, E. Wiemer, 1997, The Journal of cell biology.

PpAtg30 tags peroxisomes for turnover by selective autophagy.

S. Subramani, Ravi Manjithaya, J. Farré, 2008, Developmental cell.

Autophagy receptor CALCOCO2/NDP52 takes center stage in Crohn disease

P. Rosenstiel, A. Franke, D. Ellinghaus, 2013, Autophagy.

Analysis of spontaneous and double-strand break-induced recombination in rad mutants of S. pombe.

E. Fortunato, S. Subramani, F. Osman, 1996, Mutation research.

The rad3+ gene of Schizosaccharomyces pombe is involved in multiple checkpoint functions and in DNA repair.

G. Jimenez, R. Rowley, S. Subramani, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Isolation and characterization of the Schizosaccharomyces pombe rad3 gene, involved in the DNA damage and DNA synthesis checkpoints.

P. Sunnerhagen, B. Seaton, S. Subramani, 1992, Gene.

Unique Requirements for Mono- and Polyubiquitination of the Peroxisomal Targeting Signal Co-receptor, Pex20*

S. Subramani, Xueqian Liu, 2013, The Journal of Biological Chemistry.

A Ubiquitin-like Protein Involved in Membrane Fusion

S. Subramani, J. Farré, 2007, Cell.

The rad16 gene of Schizosaccharomyces pombe: a homolog of the RAD1 gene of Saccharomyces cerevisiae

A. Carr, A. Nasim, S. Subramani, 1994, Molecular and cellular biology.

Peroxisomes: Organization and Transport in Neurons

S. Subramani, N. Rayapuram, 2009 .

Organization and Transport of Peroxisomes in Neurons

S. Subramani, N. Rayapuram, 2022 .

A Near-Chromosome Level Genome Assembly of Anopheles stephensi

S. Subramani, Naveen Kumar, C. Ghosh, 2020, bioRxiv.

Late‐onset retinal degeneration pathology due to mutations in CTRP5 is mediated through HTRA1

C. Hayward, S. Subramani, P. Shaw, 2019, Aging cell.

Development of the yeast Pichia pastoris as a model organism for a genetic and molecular analysis of peroxisome assembly

J. Heyman, S. Subramani, S. Gould, 1992, Yeast.

Results Import of bHSA-SKL Involves the Association of Hsp 70 Molecules with Peroxisomes

S. Subramani, R. Rachubinski, P. Walton, 2002 .

Identification of a TNF-TNFR-like system in malaria vectors (Anopheles stephensi) likely to influence Plasmodium resistance

Siddharth Singh, S. Subramani, C. Ghosh, 2022, bioRxiv.

Identification of a peroxisome proliferator-responsive element upstream of the gene encoding rat peroxisomal enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase.

J. Capone, S. Subramani, R. Rachubinski, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Applications of the Firefly Luciferase as a Reporter Gene

S. Subramani, M. Deluca, 1988 .

Complex functional interactions at the early enhancer of the PQ strain of BK virus

S. Subramani, A. T. Ferguson, 1994, Journal of virology.

The Role of Autophagy during Group B Streptococcus Infection of Blood-Brain Barrier Endothelium*

R. Gottlieb, S. Subramani, A. Till, 2014, The Journal of Biological Chemistry.

Peroxisome biogenesis, membrane contact sites, and quality control

S. Subramani, Marco Proietto, J. Farré, 2018, EMBO reports.

The control of peroxisome number and size during division and proliferation.

S. Subramani, N. Rayapuram, M. Yan, 2005, Current opinion in cell biology.

Green fluorescent protein (GFP) fluorescence through the Rhodamine channel after excitation using the FITC filter set

S. Subramani, Yasuyoshi Sakai, 1997 .

Isolation and Characterization of Pas2p, a Peroxisomal Membrane Protein Essential for Peroxisome Biogenesis in the Methylotrophic Yeast Pichia pastoris*

K. Faber, E. Wiemer, S. Subramani, 1996, The Journal of Biological Chemistry.

Normal cholesterol synthesis in human cells requires functional peroxisomes.

Victoria J. Hodge, H. Moser, S. Subramani, 1991, Biochemical and biophysical research communications.

Overexpression of Pex15p, a phosphorylated peroxisomal integral membrane protein required for peroxisome assembly in S.cerevisiae, causes proliferation of the endoplasmic reticulum membrane

W. B. Snyder, H. Tabak, S. Subramani, 1997, The EMBO journal.

Overexpression of Pex 15 p , a phosphorylated peroxisomal integral membrane protein required for peroxisome assembly in S . cerevisiae , causes proliferation of the endoplasmic reticulum membrane

W. B. Snyder, H. Tabak, S. Subramani, 1997 .

University of Groningen Isolation and characterization of Pas2p, a peroxisomal membrane protein essential for peroxisome biogenesis in the methylotrophic yeast Pichia pastoris Wiemer,

K. Faber, E. Wiemer, S. Subramani, 1996 .

Isolation and characterization of Pas 2 p , a peroxisomal membrane protein essential for peroxisome biogenesis in the methylotrophic yeast Pichia

K. Faber, E. Wiemer, S. Subramani, 1996 .

The rad21 Gene Product of Schizosaccharomyces pombe Is a Nuclear, Cell Cycle-regulated Phosphoprotein (*)

R. Birkenbihl, S. Subramani, 1995, The Journal of Biological Chemistry.

Radiation resistance in Schizosaccharomyces pombe

S. Subramani, 1991, Molecular microbiology.

Cloning and characterization of rad21 an essential gene of Schizosaccharomyces pombe involved in DNA double-strand-break repair.

R. Birkenbihl, S. Subramani, 1992, Nucleic acids research.

A Conserved Cysteine Residue of Pichia pastoris Pex20p Is Essential for Its Recycling from the Peroxisome to the Cytosol*

S. Subramani, S. Léon, 2007, Journal of Biological Chemistry.

De novo peroxisome biogenesis: Evolving concepts and conundrums.

S. Subramani, Gaurav Agrawal, 2016, Biochimica et biophysica acta.

The radl6 Gene of Schizosaccharomyces pombe: a Homolog of the RADI Gene of Saccharomyces cerevisiae

A. Carr, A. Nasim, S. Subramani, 2022 .

Separation of phenotypes in mutant alleles of the Schizosaccharomyces pombe cell-cycle checkpoint gene rad1+.

G. Jimenez, P. Sunnerhagen, S. Subramani, 1995, Molecular biology of the cell.

Characterization of Human and Murine PMP20 Peroxisomal Proteins That Exhibit Antioxidant Activity in Vitro *

S. Subramani, P. V. Van Veldhoven, H. Avraham, 1999, The Journal of Biological Chemistry.

Mechanistic Insights into the Role of Atg11 in Selective Autophagy.

S. Subramani, Katarzyna Zientara-Rytter, 2020, Journal of molecular biology.

A Cytoplasm to Vacuole Targeting Pathway in P. pastoris

S. Subramani, J. Farré, J. Vidal, 2007, Autophagy.

TRIM37 deficiency induces autophagy through deregulating the MTORC1-TFEB axis

Wei Wang, S. Subramani, J. Farré, 2018, Autophagy.

Pex17p is required for import of both peroxisome membrane and lumenal proteins and interacts with Pex19p and the peroxisome targeting signal-receptor docking complex in Pichia pastoris.

W. B. Snyder, A. Koller, L. Rangell, 1999, Molecular biology of the cell.

Pex19p interacts with Pex3p and Pex10p and is essential for peroxisome biogenesis in Pichia pastoris.

W. B. Snyder, K. Faber, A. Koller, 1999, Molecular biology of the cell.

Two AAA Family Peroxins, PpPex1p and PpPex6p, Interact with Each Other in an ATP-Dependent Manner and Are Associated with Different Subcellular Membranous Structures Distinct from Peroxisomes

K. Faber, J. Heyman, S. Subramani, 1998, Molecular and Cellular Biology.

Unidirectional deletion and linker scan analysis of the late promoter of the human papovavirus BK.

S. Subramani, J. Cassill, K. L. Deyerle, 1989, Virology.

Involvement of 70-kD heat-shock proteins in peroxisomal import

W. Welch, S. Subramani, R. Rachubinski, 1994, The Journal of cell biology.

The late promoter of the human papovavirus BK is contained within the early promoter enhancer region.

S. Subramani, J. Cassill, 1988, Virology.

A naturally occurring deletion in the enhancer repeats of the human papovavirus BK optimizes early enhancer function at the expense of late promoter activity.

S. Subramani, J. Cassill, 1989, Virology.

Human papovavirus BK early gene regulation in nonpermissive cells.

S. Subramani, K. L. Deyerle, 1989, Virology.

Analysis of origin of DNA replication of human papovavirus BK

S. Subramani, F. Sajjadi, K. L. Deyerle, 1989, Journal of virology.

Analysis of the early regulatory region of the human papovavirus BK.

S. Subramani, J. Cassill, K. L. Deyerle, 1987, Virology.

Title Role of the PAS 1 gene of Pichia pastoris in peroxisome biogenesis

S. Subramani, E. Monosov, 2002 .

Enrichment of phenotype among biological forms of Anopheles stephensi Liston through establishment of isofemale lines

S. Subramani, S. Srinivasan, R. Kushwah, 2022, bioRxiv.

TRIM37, a novel E3 ligase for PEX5-mediated peroxisomal matrix protein import

Wei Wang, S. Subramani, J. Farré, 2017, The Journal of cell biology.

A mammalian pexophagy target

S. Subramani, 2015, Nature Cell Biology.

Phosphorylation of mitophagy and pexophagy receptors coordinates their interaction with Atg8 and Atg11

S. Subramani, Aaron Burkenroad, J. Farré, 2013, EMBO reports.

Dynamics of the peroxisomal import cycle of PpPex20p

J. Yates, W. McDonald, J. Cregg, 2006, The Journal of cell biology.

Visualization of the compartment in living mammalian cells: dynamic behavior and association with microtubules.

T. Deerinck, Mark Ellisman, E. Wiemer, 1996 .

Labeling of peroxisomes with green fluorescent protein in living P. pastoris cells.

J. Heyman, S. Subramani, E. Monosov, 1996, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

Antibodies directed against the peroxisomal targeting signal of firefly luciferase recognize multiple mammalian peroxisomal proteins

S. Subramani, S. Gould, S. Krisans, 1990, The Journal of cell biology.

Transport of microinjected alcohol oxidase from Pichia pastoris into vesicles in mammalian cells: involvement of the peroxisomal targeting signal

S. Subramani, J. Feramisco, R. Rachubinski, 1992, The Journal of cell biology.

Use of the DNA polymerase chain reaction for homology probing: isolation of partial cDNA or genomic clones encoding the iron-sulfur protein of succinate dehydrogenase from several species.

S. Subramani, S. Gould, I. Scheffler, 1989, Proceedings of the National Academy of Sciences of the United States of America.

Analysis of recombination in mammalian cells using SV40 and SV40-derived vectors.

S. Subramani, 1989, Mutation research.

Speedy: a novel cell cycle regulator of the G2/M transition

D. Donoghue, J. Lenormand, R. Dellinger, 1999, The EMBO journal.

Double-strand break-induced mitotic intrachromosomal recombination in the fission yeast Schizosaccharomyces pombe.

E. Fortunato, S. Subramani, F. Osman, 1996, Genetics.

Cell-free sorting of peroxisomal membrane proteins from the endoplasmic reticulum

S. Subramani, Gaurav Agrawal, Saurabh Joshi, 2011, Proceedings of the National Academy of Sciences.

At least two types of control regions can be found among naturally occurring BK virus strains

S. Subramani, U. Moens, T. Traavik, 1990, Journal of virology.

The Peroxin Pex19p Interacts with Multiple, Integral Membrane Proteins at the Peroxisomal Membrane

W. B. Snyder, A. Koller, S. Subramani, 2000, The Journal of cell biology.

AtLeastTwoTypesofControl Regions CanBeFoundamong Naturally Occurring BK VirusStrains

S. Subramani, 1990 .

Targeting of proteins into the peroxisomal matrix

S. Subramani, 2004, The Journal of Membrane Biology.

Amplification and sequencing of the control regions of BK and JC virus from human urine by polymerase chain reaction.

S. Subramani, T. Traavik, R. Arthur, 1991, Virology.

JCB_201611170 2843..2858

Wei Wang, S. Subramani, J. Farré, 2017 .

Modification of a model membrane structure by embedded photochrome

S. Subramani, D. Balasubramanian, C. Kumar, 1975, Nature.

The Roles of Ubiquitin-Binding Protein Shuttles in the Degradative Fate of Ubiquitinated Proteins in the Ubiquitin-Proteasome System and Autophagy

S. Subramani, Katarzyna Zientara-Rytter, 2019, Cells.

Protein import deficiencies in human peroxisomal disorders.

E. Wiemer, S. Subramani, Suresh Subramani, 1994, Molecular genetic medicine.

Identification of Peroxisomal Targeting Signals Located at the Carboxy Terminus of Four Peroxisomal Proteins Materials and Methods Reagents

S Subramani, S. Subramani, S. Gould, 1988 .

OXPHOS deficiencies affect peroxisome proliferation by downregulating genes controlled by the SNF1 signaling pathway

S. Subramani, J. Farré, Krypton Carolino, 2021, bioRxiv.

Peroxisome assembly: matrix and membrane protein biogenesis

S. Subramani, Changle Ma, Gaurav Agrawal, 2011, The Journal of cell biology.

Evolutionary conservation of a microbody targeting signal that targets proteins to peroxisomes, glyoxysomes, and glycosomes

C. Wang, W. Schliebs, S. Subramani, 1991, The Journal of cell biology.

A conserved tripeptide sorts proteins to peroxisomes

S Subramani, S. Gould, S. Subramani, 1989, The Journal of cell biology.

Linker scan analysis of the early regulatory region of human papovavirus BK

S. Subramani, K. L. Deyerle, Suresh Subramani, 1988, Journal of virology.

An upstream region of the enoyl-coenzyme A hydratase/3-hydroxyacyl-coenzyme A dehydrogenase gene directs luciferase expression in liver in response to peroxisome proliferators in transgenic mice.

J. Capone, C. Fan, S. Subramani, 1994, Cancer research.

Identification of a peroxisomal targeting signal at the carboxy terminus of firefly luciferase

S. Gould, S. Subramani, G. Keller, 1987, The Journal of cell biology.

Unconventional secretion of Pichia pastoris Acb1 is dependent on GRASP protein, peroxisomal functions, and autophagosome formation

C. Anjard, W. Loomis, S. Subramani, 2010, The Journal of cell biology.

Presence of cytoplasmic factors functional in peroxisomal protein import implicates organelle-associated defects in several human peroxisomal disorders.

S. Subramani, M. Wendland, 1993, The Journal of clinical investigation.

Chapter 17 Mechanisms of transport of proteins into microbodies

S. Subramani, 1992 .

Non-autophagic roles of autophagy-related proteins

V. Malhotra, S. Subramani, 2013, EMBO reports.

Hepatitis B Virus Disrupts Mitochondrial Dynamics: Induces Fission and Mitophagy to Attenuate Apoptosis

A. Siddiqui, Mohsin Khan, S. Subramani, 2013, PLoS pathogens.

Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies.

Nadezhda T. Doncheva, D. Strachan, M. Rivas, 2013, Gastroenterology.

Pichia pastoris Pex14p, a phosphorylated peroxisomal membrane protein, is part of a PTS–receptor docking complex and interacts with many peroxins

W. B. Snyder, J. Cregg, S. Subramani, 2001, Yeast.

Peroxisomal protein import is conserved between yeast, plants, insects and mammals.

H. Tabak, S. Subramani, S. Howell, 1990, The EMBO journal.

Checkpoint controls in Schizosaccharomyces pombe: rad1.

R. Rowley, S. Subramani, P. Young, 1992, The EMBO journal.

Role of the PAS1 gene of Pichia pastoris in peroxisome biogenesis

J. Heyman, S. Subramani, E. Monosov, 1994, The Journal of cell biology.

Cloning and characterization of PAS5: a gene required for peroxisome biogenesis in the methylotrophic yeast Pichia pastoris

S. Subramani, A. Spong, Suresh Subraman, 1993, The Journal of cell biology.

Identification of a novel human peroxisomal 2,4-dienoyl-CoA reductase related protein using the M13 phage protein VI phage display technology.

S. Subramani, G. Mannaerts, M. Fransen, 2001, Combinatorial chemistry & high throughput screening.

Characterization of Protein-Protein Interactions

S. Subramani, N. Rayapuram, S. Léon, 2007 .

Defects in GABA metabolism affect selective autophagy pathways and are alleviated by mTOR inhibition

S. Subramani, A. Till, K. Gibson, 2014, EMBO molecular medicine.

Glycosome assembly in trypanosomes: variations in the acceptable degeneracy of a COOH-terminal microbody targeting signal

C. Clayton, S. Subramani, T. Prospero, 1992, The Journal of cell biology.

Germ-line transmission of a disrupted β2microglobulin gene produced by homologous recombination in embryonic stem cells

R. Jaenisch, E. Li, M. Zijlstra, 1989, Nature.

Recognition and Chaperoning by Pex19, Followed by Trafficking and Membrane Insertion of the Peroxisome Proliferation Protein, Pex11

S. Subramani, J. Farré, Krypton Carolino, 2022, Cells.

Pex22p of Pichia pastoris, Essential for Peroxisomal Matrix Protein Import, Anchors the Ubiquitin-Conjugating Enzyme, Pex4p, on the Peroxisomal Membrane

W. B. Snyder, K. Faber, A. Koller, 1999, The Journal of cell biology.

Functional regions of the peroxin Pex19 necessary for peroxisome biogenesis

S. Subramani, Gaurav Agrawal, H. H. Shang, 2017, The Journal of Biological Chemistry.

Distinct requirements for intra-ER sorting and budding of peroxisomal membrane proteins from the ER

S. Subramani, Gaurav Agrawal, Scott N. Fassas, 2016, The Journal of cell biology.

Recent advances in peroxisomal matrix protein import.

S. Subramani, Changle Ma, Xueqian Liu, 2012, Current opinion in cell biology.

Quantitative analysis of peroxisomal protein import in vitro.

S. Subramani, S. R. Terlecky, J. E. Legakis, 2001, Experimental cell research.

Genomic organization, chromosomal localization and tissue specific expression of the murine Pxmp2 gene encoding the 22 kDa peroxisomal membrane protein (Pmp22).

S. Subramani, D. Otte, G. Lüers, 2001, Gene.

The importomer--a peroxisomal membrane complex involved in protein translocation into the peroxisome matrix.

S. Subramani, N. Rayapuram, 2006, Biochimica et biophysica acta.

Uniqueness of the mechanism of protein import into the peroxisome matrix: transport of folded, co-factor-bound and oligomeric proteins by shuttling receptors.

Suresh Subramani, S. Subramani, J. Goodman, 2006, Biochimica et biophysica acta.

A Mobile PTS2 Receptor for Peroxisomal Protein Import in Pichia pastoris

S. Subramani, J. McCaffery, M. Farquhar, 1998, The Journal of cell biology.

A New Yeast Peroxin, Pex36, a Functional Homolog of Mammalian PEX16, Functions in the ER-to-Peroxisome Traffic of Peroxisomal Membrane Proteins.

J. Cregg, S. Subramani, A. Till, 2017, Journal of molecular biology.

The peroxisomal matrix import of Pex8p requires only PTS receptors and Pex14p.

S. Subramani, N. Rayapuram, Changle Ma, 2009, Molecular biology of the cell.

Two independent pathways traffic the intraperoxisomal peroxin PpPex8p into peroxisomes: mechanism and evolutionary implications.

S. Subramani, S. Léon, Lan Zhang, 2005, Molecular biology of the cell.

Peroxisome Remnants in pex3Δ Cells and the Requirement of Pex3p for Interactions Between the Peroxisomal Docking and Translocation Subcomplexes

W. B. Snyder, S. Subramani, I. Suriapranata, 2002, Traffic.

Atg28, a Novel Coiled-Coil Protein Involved in Autophagic Degradation of Peroxisomes in the Methylotrophic Yeast Pichia pastoris

J. Cregg, S. Subramani, A. Sibirny, 2006, Autophagy.

Peroxisome Degradation by Microautophagy in Pichia pastoris: Identification of Specific Steps and Morphological Intermediates

A. Koller, L. Rangell, S. Subramani, 1998, The Journal of cell biology.

Hitchhiking fads en route to peroxisomes

S. Subramani, 2002, The Journal of cell biology.

Phosphorylation-dependent Pex11p and Fis1p interaction regulates peroxisome division

S. Subramani, Gaurav Agrawal, Saurabh Joshi, 2012, Molecular biology of the cell.

Peroxisomal Pex3 Activates Selective Autophagy of Peroxisomes via Interaction with the Pexophagy Receptor Atg30*

S. Subramani, J. Farré, T. Y. Nazarko, 2015, The Journal of Biological Chemistry.

Dysferlin domain-containing proteins, Pex30p and Pex31p, localized to two compartments, control the number and size of oleate-induced peroxisomes in Pichia pastoris.

S. Subramani, R. Rachubinski, M. Yan, 2007, Molecular biology of the cell.

PEX genes on the rise

S. Subramani, 1997, Nature Genetics.

Import of stably folded proteins into peroxisomes.

S. Subramani, P. Walton, P. E. Hill, 1995, Molecular biology of the cell.

Mxr1p, a Key Regulator of the Methanol Utilization Pathway and Peroxisomal Genes in Pichia pastoris

J. Cregg, S. Subramani, M. Veenhuis, 2006, Molecular and Cellular Biology.

Pex 22 p of Pichia pastoris , Essential for Peroxisomal Matrix Protein Import , Anchors the Ubiquitin-conjugating Enzyme , Pex 4 p , on the Peroxisomal Membrane

W. B. Snyder, K. Faber, A. Koller, 1999 .

Transport of Microinjected Proteins into the Peroxisomes of Mammalian Cells

S. Subramani, S. Gould, P. Walton, 1993 .

Transport of microinjected proteins into peroxisomes of mammalian cells: inability of Zellweger cell lines to import proteins with the SKL tripeptide peroxisomal targeting signal

S. Subramani, J. Feramisco, S. Gould, 1992, Molecular and cellular biology.

Molecular mechanism and physiological role of pexophagy

S. Subramani, Ravi Manjithaya, J. Farré, 2010, FEBS letters.

The Pichia pastoris dihydroxyacetone kinase is a PTS1‐containing, but cytosolic, protein that is essential for growth on methanol

S. Subramani, G. Lüers, T. Wenzel, 1998, Yeast.

The unique degradation pathway of the PTS2 receptor, Pex7, is dependent on the PTS receptor/coreceptor, Pex5 and Pex20

S. Subramani, D. Hagstrom, Changle Ma, 2014, Molecular biology of the cell.

Autophagic degradation of peroxisomes in mammals.

S. Subramani, Katarzyna Zientara-Rytter, 2016, Biochemical Society transactions.

The autophagic degradation of cytosolic pools of peroxisomal proteins by a new selective pathway

Xiaofeng Wang, S. Subramani, Xuezhi Li, 2019, Autophagy.

Peroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate phagophore formation during pexophagy

S. Subramani, A. Till, G. Ramakrishnan, 2014, The Journal of cell biology.

The requirement of sterol glucoside for pexophagy in yeast is dependent on the species and nature of peroxisome inducers.

S. Subramani, Ravi Manjithaya, A. Sibirny, 2006, Molecular Biology of the Cell.

Use of Pichia pastoris as a model eukaryotic system. Peroxisome biogenesis.

K. Faber, J. Heyman, A. Koller, 1998, Methods in molecular biology.

Signals, Receptors, and Cytosolic Factors Involved in Peroxisomal Protein Import

E. Wiemer, S. Subramani, S. R. Terlecky, 1996, Annals of the New York Academy of Sciences.

Pex3 and Atg37 compete to regulate the interaction between the pexophagy receptor, Atg30, and the Hrr25 kinase

S. Subramani, T. Y. Nazarko, K. Ozeki, 2018, Autophagy.

Mechanistic insights into selective autophagy pathways: lessons from yeast

S. Subramani, J. Farré, Jean-Claude Farré, 2016, Nature Reviews Molecular Cell Biology.

Environmental response of yeast peroxisomes

S. Subramani, Y. Sakai, 2007, Cell Biochemistry and Biophysics.

A yeast MAPK cascade regulates pexophagy but not other autophagy pathways

S. Subramani, Ravi Manjithaya, J. Farré, 2010, The Journal of cell biology.

Mutagenesis of the amino targeting signal of Saccharomyces cerevisiae 3-ketoacyl-CoA thiolase reveals conserved amino acids required for import into peroxisomes in vivo.

S Subramani, J R Glover, D. Andrews, 1994, The Journal of biological chemistry.

The genome trilogy of Anopheles stephensi, an urban malaria vector, reveals structure of a locus associated with adaptation to environmental heterogeneity

S. Subramani, Mahul Chakraborty, C. Ghosh, 2021, Scientific Reports.

Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

A. James, J. J. Emerson, A. Adolfi, 2021, BMC Biology.

BiFC Method Based on Intraorganellar Protein Crowding Detects Oleate-Dependent Peroxisomal Targeting of Pichia pastoris Malate Dehydrogenase

S. Subramani, Paul H. Li, J. Farré, 2021, International journal of molecular sciences.

Localization of proteins and organelles using fluorescence microscopy.

S. Subramani, J. Farré, K. Booher, 2007, Methods in molecular biology.

HPIminer: A text mining system for building and visualizing human protein interaction networks and pathways

Kalpana Raja, Jeyakumar Natarajan, Pankaj Moses Monickaraj, 2015, J. Biomed. Informatics.

Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.

Trey Ideker, Rama Balakrishnan, J Michael Cherry, 2017, Molecular cell.

Identification of peroxisomal proteins by using M13 phage protein VI phage display: molecular evidence that mammalian peroxisomes contain a 2,4-dienoyl-CoA reductase.

S. Subramani, M. Fransen, P. V. Van Veldhoven, 1999, The Biochemical journal.

Autophagy: a broad role in unconventional protein secretion?

S. Subramani, Ravi Manjithaya, 2011, Trends in cell biology.

Correction of deletions in mammalian cells by gene conversion

S. Subramani, J. Rubnitz, S. Subramani, 1987, Somatic cell and molecular genetics.

Targeting efficiencies of various permutations of the consensus C‐terminal tripeptide peroxisomal targeting signal

S Subramani, S. Subramani, S. Gould, 1992, FEBS letters.

The carboxyl-terminal tripeptide serine-lysine-leucine of firefly luciferase is necessary but not sufficient for peroxisomal import in yeast.

S. Subramani, S. Gould, B. Distel, 1992, The New biologist.

Characterization of protein-DNA interactions within the peroxisome proliferator-responsive element of the rat hydratase-dehydrogenase gene.

S Subramani, J. Capone, S. Subramani, 1993, The Journal of biological chemistry.

Analysis of the peroxisomal acyl‐CoA oxidase gene product from Pichia pastoris and determination of its targeting signal

A. Koller, S. Subramani, A. Spong, 1999, Yeast.

The CUP1 promoter of Saccharomyces cerevisiae is inducible by copper in Pichia pastoris

S Subramani, A. Koller, J. Valesco, 2000, Yeast.

p34cdc2 kinase activity is maintained upon activation of the replication checkpoint in Schizosaccharomyces pombe.

J. Wang, S. Subramani, K. Knudsen, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

A. James, J. J. Emerson, A. Adolfi, 2022, BMC biology.

The mechanism of dissociation of aspartate transcarbamoylase by p-mercuribenzoate.

H. K. Schachman, S. Subramani, 1981, The Journal of biological chemistry.

Mechanism of disproportionation of asparate transcarbamoylase molecules lacking one regulatory subunit.

H. K. Schachman, S. Subramani, 1980, The Journal of biological chemistry.

Atg35, a micropexophagy-specific protein that regulates micropexophagic apparatus formation in Pichia pastoris

J. Cregg, S. Subramani, D. Warnecke, 2011, Autophagy.

Special delivery from mitochondria to peroxisomes.

Suresh Subramani, S. Subramani, U. Schumann, 2008, Trends in cell biology.

Evolutionary trends and functional anatomy of the human expanded autophagy network

T. Ideker, A. Siddiqui, S. Subramani, 2015, Autophagy.

Overview of the interactive task in BioCreative V

Jeyakumar Natarajan, Shruti Rao, Zhiyong Lu, 2015, Database J. Biol. Databases Curation.

ProNormz - An integrated approach for human proteins and protein kinases normalization

Kalpana Raja, Jeyakumar Natarajan, Suresh Subramani, 2014, J. Biomed. Informatics.

HomoKinase: A Curated Database of Human Protein Kinases

Jeyakumar Natarajan, Suresh Subramani, J. Natarajan, 2013 .

Self-destruction in the line of duty.

S. Subramani, 2001, Developmental cell.

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

Jeyakumar Natarajan, Zhiyong Lu, K. Bretonnel Cohen, 2013, Database J. Biol. Databases Curation.

PPInterFinder—a mining tool for extracting causal relations on human proteins from literature

Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, 2013, Database J. Biol. Databases Curation.

Role of actin in shaping autophagosomes

S. Subramani, Katarzyna Zientara-Rytter, 2016, Autophagy.

A hybrid named entity tagger for tagging human proteins/genes

J. Natarajan, Kalpana Raja, S. Subramani, 2014, Int. J. Data Min. Bioinform..

Convergent and divergent mechanisms of peroxisomal and mitochondrial division

S. Subramani, J. Farré, Nandini Shukla, 2023, The Journal of cell biology.

Cell-type control of membrane biogenesis induced by HMG-CoA reductase.

J. Rine, S. Subramani, S. Gould, 1990, The New biologist.

Firefly luciferase gene: structure and expression in mammalian cells

K. Wood, D. Helinski, S. Subramani, 1987, Molecular and cellular biology.

Late‐onset retinal degeneration pathology due to mutations in CTRP5 is mediated through HTRA1

C. Hayward, S. Subramani, S. Borooah, 2019, Aging cell.

Unconventional secretion of Pichia pastoris Acb1 is dependent on GRASP protein, peroxisomal functions, and autophagosome formation

C. Anjard, W. Loomis, S. Subramani, 2010, The Journal of cell biology.

Pexophagy: The Selective Degradation of Peroxisomes

S. Subramani, A. Till, Ronak Lakhani, 2012, International journal of cell biology.

A conserved tripeptide sorts proteins to peroxisomes

S. Gould, S. Subramani, N. Hosken, 1989, The Journal of cell biology.

Identification of peroxisomal targeting signals located at the carboxy terminus of four peroxisomal proteins

S. Subramani, G. Keller, Stephen J. Gould, 1988, The Journal of cell biology.

Rallying the Exocyst as an Autophagy Scaffold

S. Subramani, Jean-Claude Farré, 2011, Cell.