H. Kucuktas

发表

Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons

Zhanjiang Liu, Qing Yang, Jianguo Lu, 2010, Molecular Genetics and Genomics.

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

Z. Sha, Zhanjiang Liu, P. Richardson, 2010, Genome Biology.

degradation in response to heat stress in catfish in oxygen transport, protein synthesis, folding, and RNA-Seq reveals expression signatures of genes involved

Luyang Sun, E. Peatman, H. Kucuktas, 2013 .

Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis

Peng Xu, Ping Li, Huseyin Kucuktas, 2007, BMC Genomics.

DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment

Zhanjiang Liu, Jianguo Lu, E. Peatman, 2011, PloS one.

Development of the catfish 250K SNP array for genome-wide association studies

Zhanjiang Liu, Luyang Sun, H. Kucuktas, 2014, BMC Research Notes.

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Zhanjiang Liu, Jianguo Lu, E. Peatman, 2011, BMC Genomics.

Effect of Nutrient Restriction and Re-Feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus)

Zhanjiang Liu, H. Kucuktas, Shikai Liu, 2013, PloS one.

Comparative analysis of catfish BAC end sequences with the zebrafish genome

Zhanjiang Liu, J. Abernathy, Shaolin Wang, 2009, BMC Genomics.

High-density interspecific genetic linkage mapping provides insights into genomic incompatibility between channel catfish and blue catfish.

H. Kucuktas, R. Dunham, L. Kaltenboeck, 2016, Animal genetics.

Quantitative trait loci map for growth and morphometric traits using a channel catfish × blue catfish interspecific hybrid system1

H. Kucuktas, R. Dunham, A. Hutson, 2014 .

Quantitative trait loci map for growth and morphometric traits using a channel catfish x blue catfish interspecific hybrid system.

H. Kucuktas, R. Dunham, A. Hutson, 2014, Journal of animal science.

Catfish Species Identification Using Lab-On-Chip PCR-RFLP

Zhanjiang Liu, E. Peatman, H. Kucuktas, 2014 .

Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus).

Zhanjiang Liu, Jianguo Lu, E. Peatman, 2011, Developmental and comparative immunology.

Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment.

Z. Sha, Zhanjiang Liu, E. Peatman, 2010, Journal of experimental zoology. Part A, Ecological genetics and physiology.

Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus.

Z. Sha, Zhanjiang Liu, E. Peatman, 2010, Fish & shellfish immunology.

Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus).

Zhanjiang Liu, E. Peatman, J. Abernathy, 2010, Developmental and comparative immunology.

Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri.

Zhanjiang Liu, E. Peatman, Shaolin Wang, 2008, Molecular immunology.

Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram-negative bacterium.

Zhanjiang Liu, E. Peatman, Shaolin Wang, 2007, Developmental and comparative immunology.

Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge.

Zhanjiang Liu, E. Peatman, Shaolin Wang, 2010, Fish & shellfish immunology.

A pilot study for channel catfish whole genome sequencing and de novo assembly

Zhanjiang Liu, Jianguo Lu, E. Peatman, 2011, BMC Genomics.

Characterization of nonautonomous Tc1-like transposable elements of channel catfish (Ictalurus punctatus)

H. Kucuktas, R. Dunham, Z. Liu, 1999, Fish Physiology and Biochemistry.

Multiple isoforms and an unusual cathodic isoform of creatine kinase from channel catfish (Ictalurus punctatus).

H. Kucuktas, A. Karsi, Z. Liu, 2001, Gene.

Enhanced Bacterial Disease Resistance of Transgenic Channel Catfish Ictalurus punctatus Possessing Cecropin Genes

G. Warr, H. Kucuktas, R. Dunham, 2002, Marine Biotechnology.

Allozyme and Mitochondrial DNA Markers

Zhanjiang Liu, H. Kucuktas, 2007 .

Gene expression pro ﬁ ling of a ﬁ sh parasite Ichthyophthirius multi ﬁ liis : Insights into development and senescence-associated avirulence Comparative Biochemistry and Physiology, Part D

E. Peatman, J. Abernathy, H. Kucuktas, 2011 .

Identification and Characterization of Full-Length cDNAs in Channel Catfish (Ictalurus punctatus) and Blue Catfish (Ictalurus furcatus)

Zhanjiang Liu, C. Ke, E. Peatman, 2010, PloS one.

The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri.

Z. Sha, Zhanjiang Liu, E. Peatman, 2008, Developmental and comparative immunology.

Discovery and validation of gene‐linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus)

E. Peatman, H. Kucuktas, L. Kaltenboeck, 2015, Molecular ecology resources.

Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs

Lei Liu, Peng Xu, Ping Li, 2007, BMC Genomics.

Molecular biology of channel catfish virus

H. Kucuktas, Y. Brady, 1999 .

Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors.

Z. Sha, Zhanjiang Liu, E. Peatman, 2012, Developmental and comparative immunology.

NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish.

Z. Sha, Zhanjiang Liu, E. Peatman, 2009, Developmental and comparative immunology.

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

S. Koren, A. Phillippy, Zhanjiang Liu, 2016, Nature Communications.

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

Zhanjiang Liu, Jianguo Lu, E. Peatman, 2012, BMC Genomics.

Molecular characterization and expression analysis of the channel catfish cathepsin D genes.

Zhanjiang Liu, E. Peatman, H. Kucuktas, 2011, Fish & shellfish immunology.

Identification of a sex-linked marker for channel catfish.

E. Peatman, H. Kucuktas, R. Dunham, 2012, Animal genetics.

Bioinformatic Mining of Type I Microsatellites from Expressed Sequence Tags of Channel Catfish (Ictalurus punctatus)

Zhanjiang Liu, H. Kucuktas, Jinian Feng, 2004, Marine Biotechnology.

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

Zhanjiang Liu, Jianguo Lu, E. Peatman, 2012, BMC Genomics.

A BAC-based physical map of the channel catfish genome.

Zhanjiang Liu, Shaolin Wang, H. Kucuktas, 2007, Genomics.

Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus).

Zhanjiang Liu, E. Peatman, H. Kucuktas, 2012, Research in veterinary science.

Development of Amplified Fragment Length Polymorphism (AFLP) Markers Suitable for Genetic Linkage Mapping of Catfish

Zhanjiang Liu, H. Kucuktas, R. Dunham, 1999 .

Polymorphic microsatellite markers in Ictalurus punctatus and related catfish species

H. Kucuktas, R. Dunham, A. Karsi, 1999, Molecular ecology.

Brief communication. High levels of conservation at microsatellite loci among ictalurid catfishes

Zhanjiang Liu, H. Kucuktas, R. Dunham, 1999 .

Pathogen recognition receptors in channel catfish: III phylogeny and expression analysis of Toll-like receptors.

Zhanjiang Liu, Luyang Sun, H. Kucuktas, 2013, Developmental and comparative immunology.

Effects of Fertilization Method and of Selection for Body Weight and Species on Fertilization Efficiency of Channel Catfish Eggs with Blue or Channel Catfish Sperm

H. Kucuktas, R. Dunham, A. Bart, 1999 .

Construction of Genetic Linkage Maps and Comparative Genome Analysis of Catfish Using Gene-Associated Markers

Z. Sha, Zhanjiang Liu, W. Muir, 2009, Genetics.

Response to three generations of selection for increased body weight in channel catfish, Ictalurus punctatus, grown in earthen ponds

H. Kucuktas, R. Dunham, M. Rezk, 2003 .

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish.

Zhanjiang Liu, Luyang Sun, E. Peatman, 2013, Physiological genomics.

Phylogenetic relationships of nine mullet species (Mugilidae) in the Mediterranean Sea

H. Kucuktas, C. Turan, M. Caliskan, 2004, Hydrobiologia.

Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus).

Zhanjiang Liu, E. Peatman, Wenqi Wang, 2011, Fish & shellfish immunology.

Comparison of domestic and wild channel catfish (Ictalurus punctatus) populations provides no evidence for genetic impact

Zhanjiang Liu, H. Kucuktas, R. Dunham, 2006 .

Quality assessment parameters for EST-derived SNPs from catfish

Z. Sha, Zhanjiang Liu, T. Sonstegard, 2008, BMC Genomics.

Divergent Toll-like receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21.

Zhanjiang Liu, E. Peatman, H. Kucuktas, 2007, Fish & shellfish immunology.

Second-Generation Genetic Linkage Map of Catfish and Its Integration with the BAC-Based Physical Map

Z. Sha, Zhanjiang Liu, Jianguo Lu, 2012, G3: Genes | Genomes | Genetics.

Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses.

Zhanjiang Liu, Jianguo Lu, E. Peatman, 2011, Developmental and comparative immunology.

Alternative complement pathway of channel catfish (Ictalurus punctatus): molecular characterization, mapping and expression analysis of factors Bf/C2 and Df.

Zhanjiang Liu, Jianguo Lu, E. Peatman, 2012, Fish & shellfish immunology.

Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: Insights into development and senescence-associated avirulence.

Zhanjiang Liu, E. Peatman, J. Abernathy, 2011, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

Transcriptomic profiling of Ichthyophthirius multifiliis reveals polyadenylation of the large subunit ribosomal RNA.

Zhanjiang Liu, J. Abernathy, H. Kucuktas, 2009, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

Characterization of a BAC Library from Channel Catfish Ictalurus punctatus: Indications of High Levels of Chromosomal Reshuffling Among Teleost Genomes

B. Zhu, Zhanjiang Liu, P. Jong, 2007, Marine Biotechnology.

Molecular characterization and differential expression of the myostatin gene in channel catfish (Ictalurus punctatus).

Zhanjiang Liu, H. Kucuktas, R. Dunham, 2002, Biochimica et biophysica acta.

Molecular characterization of complement factor I reveals constitutive expression in channel catfish.

Zhanjiang Liu, Jianguo Lu, J. Abernathy, 2009, Fish & shellfish immunology.

Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags

Zhanjiang Liu, E. Peatman, H. Kucuktas, 2004, Immunogenetics.

Cloning and expression of a putative glycoprotein gene of channel catfish virus using baculovirus expression system.

H. Kucuktas, Y. Brady, S. Tuzun, 1998, Diseases of aquatic organisms.

Microsatellite variation among domesticated populations of channel catfish (Ictalurus punctatus) and blue catfish (I. furcatus).

Zhanjiang Liu, J. Ballenger, H. Kucuktas, 2008 .

Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs).

Zhanjiang Liu, E. Peatman, H. Kucuktas, 2012, Developmental and comparative immunology.

Sequence analysis and expression of a CXC chemokine in resistant and susceptible catfish after infection of Edwardsiella ictaluri.

Zhanjiang Liu, E. Peatman, H. Kucuktas, 2004, Developmental and comparative immunology.

The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish

Qing Yang, Jianguo Lu, James M. Reecy, 2010, Nucleic Acids Res..

Effect of Rainbow Trout Growth Hormone Complementary DNA on Body Shape, Carcass Yield, and Carcass Composition of F1 and F2 Transgenic Common Carp (Cyprinus carpio

R. T. Lovell, H. Kucuktas, J. Weete, 2002, Marine Biotechnology.