Lu Xie

发表

Web-based interrogation of gene expression signatures using EXALT

Jian Yu, Jun Wu, Shyr Yu, 2009, BMC Bioinformatics.

The Structural Characterization of Tumor Fusion Genes and Proteins

Wen Zhang, Dandan Wang, Jian Ouyang, 2015, Comput. Math. Methods Medicine.

PAnnBuilder: an R package for assembling proteomic annotation data

Hong Li, Yixue Li, Guohui Ding, 2009, Bioinform..

Improving Inference of Rate Parameters for Viral Capsid Assembly Systems

Russell Schwartz, Lu Xie, Gregory R. Smith, 2013 .

Combinatorial network of transcriptional regulation and microRNA regulation in human cancer

Hui Yu, Yixue Li, Yuan-Yuan Li, 2012, BMC Systems Biology.

Review Process File

Yixue Li, Ying He, Tao Xu, 2012 .

Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data

Hui Yu, Feng Wang, Yixue Li, 2007, BMC Bioinformatics.

Medoidshift clustering applied to genomic bulk tumor data

Russell Schwartz, Lu Xie, Theodore Roman, 2015, BMC Genomics.

Automatic facial flaw detection and retouching via discriminative structure tensor

Qinmu Peng, Bineng Zhong, Xin Liu, 2017, IET Image Process..

ITFP: an integrated platform of mammalian transcription factors

Qing Yang, Chaochun Wei, Yangyong Zhu, 2008, Bioinform..

Integrative analysis of methylation and transcriptional profiles to predict aging and construct aging specific cross-tissue networks

Tao Huang, Lei Liu, Yin Wang, 2016, BMC Systems Biology.

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information

Tao Huang, Lei Liu, Qi Liu, 2010, BMC Bioinformatics.

Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma

Wei Li, Lin Wei, Lu Xie, 2014, BMC Genomics.

SysPTM 2.0: an updated systematic resource for post-translational modification

Wei Li, Jing Li, Ling Li, 2014, Database J. Biol. Databases Curation.

dbDEPC 3.0: the database of differentially expressed proteins in human cancer with multi-level annotation and drug indication

Yong Zhao, Hui Cui, Yuqi Zhang, 2018, Database J. Biol. Databases Curation.

The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma

Tao Huang, Lei Liu, Qi Liu, 2011, Int. J. Comput. Biol. Drug Des..

Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma

Tao Huang, Lei Liu, Qi Liu, 2010, BCB '10.

Nonsynonymous Single-Nucleotide Variations on Some Posttranslational Modifications of Human Proteins and the Association with Diseases

Bo Sun, Hong Li, Yixue Li, 2015, Comput. Math. Methods Medicine.

dbDEPC 2.0: updated database of differentially expressed proteins in human cancers

Jing Li, Hong Li, Yixue Li, 2011, Nucleic Acids Res..

Automated deconvolution of structured mixtures from heterogeneous tumor genomic data

Russell Schwartz, Lu Xie, Theodore Roman, 2016, PLoS Comput. Biol..

Motif-Based Text Mining of Microbial Metagenome Redundancy Profiling Data for Disease Classification

Lei Liu, Yin Wang, Lu Xie, 2016, BioMed research international.

dbDEPC: a database of Differentially Expressed Proteins in human Cancers

Chuan Wang, Hong Li, Yixue Li, 2009, Nucleic Acids Res..

The combination approach of SVM and ECOC for powerful identification and classification of transcription factor

Qing Yang, Chaochun Wei, Yangyong Zhu, 2008, BMC Bioinformatics.

Acoustic Field Measurement and Analysis for a Spherical Phased Array by PVDF Needle Hydrophone

Yazhu Chen, Jingfeng Bai, Lu Xie, 2009, 2009 2nd International Conference on Biomedical Engineering and Informatics.

Investigation of lipid metabolism dysregulation and the effects on immune microenvironments in pan-cancer using multiple omics data

Yang Hao, Yong Xu, Jian Ouyang, 2019, BMC Bioinformatics.

The Prediction of Drug-Disease Correlation Based on Gene Expression Data

Lu Xie, Xiangyi Li, Menghuan Zhang, 2018, BioMed research international.

More than 9,000,000 Unique Genes in Human Gut Bacterial Community: Estimating Gene Numbers Inside a Human Body

Chaochun Wei, Lu Xie, Chaochun Wei, 2009, PloS one.

SySAP: a system-level predictor of deleterious single amino acid polymorphisms

Lu Xie, Guoqing Zhang, Tao Huang, 2011, Protein & Cell.

Identifying Prognostic Features by Bottom-Up Approach and Correlating to Drug Repositioning

Qian Liu, Jian Yu, Lu Xie, 2015, PloS one.

dbPHCC: a database of prognostic biomarkers for hepatocellular carcinoma that provides online prognostic modeling.

Ying Sun, Dandan Wang, Jian Ouyang, 2016, Biochimica et biophysica acta.

Improved prediction of lysine acetylation by support vector machines.

Yu Shyr, Lu Xie, Mingfa Li, 2009, Protein and peptide letters.

Biomolecular Network-Based Synergistic Drug Combination Discovery

Lu Xie, Guangrong Qin, Lanming Chen, 2016, BioMed research international.

SyStemCell: A Database Populated with Multiple Levels of Experimental Data from Stem Cell Differentiation Research

Jiehuan Sun, Jian Yu, Wei Li, 2012, PloS one.

A Quantitative Analysis of the Impact on Chromatin Accessibility by Histone Modifications and Binding of Transcription Factors in DNase I Hypersensitive Sites

Lu Xie, Menghuan Zhang, Baofeng Lian, 2013, BioMed research international.

Using GeneReg to construct time delay gene regulatory networks

Lei Liu, Tao Huang, Ziliang Qian, 2010, BMC Research Notes.

The prediction of interferon treatment effects based on time series microarray gene expression profiles

Yu Shyr, Tao Huang, Lu Xie, 2008, Journal of Translational Medicine.

Novel biomarkers for pre-diabetes identified by metabolomics

Christian Gieger, Thomas Meitinger, Monica Campillos, 2012, Molecular systems biology.

CanProVar 2.0: An Updated Database of Human Cancer Proteome Variation.

Xiaojing Wang, Bo Wang, Lu Xie, 2017, Journal of proteome research.

Differences between Human Plasma and Serum Metabolite Profiles

Florian Kronenberg, Gabi Kastenmüller, Lu Xie, 2011, PloS one.

DigOut: viewing differential expression genes as outliers.

Lu Xie, Yuanyuan Li, Hui Yu, 2010, Journal of bioinformatics and computational biology.

A novel sequence-based method of predicting protein DNA-binding residues, using a machine learning approach

Lu Xie, Yudong Cai, ZhiSong He, 2010, Molecules and cells.

Acetylation of Metabolic Enzymes Coordinates Carbon Source Utilization and Metabolic Flux

Guo-Ping Zhao, Yufeng Yao, Chen Yang, 2010, Science.

Identification of HPV integration and gene mutation in HeLa cell line by integrated analysis of RNA-Seq and MS/MS data.

Chen Chen, Xiaojing Wang, Lu Xie, 2015, Journal of proteome research.

[Post-translational modification (PTM) bioinformatics in China: progresses and perspectives].

Ao Li, Lu Xie, Jian Ren, 2015, Yi chuan = Hereditas.

A Unified 35-Gene Signature for both Subtype Classification and Survival Prediction in Diffuse Large B-Cell Lymphomas

Tao Huang, Yu-Dong Cai, Lu Xie, 2010, PloS one.

Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms

Lei Liu, Lu Xie, Yi-Xue Li, 2009, Nucleic acids research.

Prediction of lysine ubiquitination with mRMR feature selection and analysis

Tao Huang, Lu Xie, Yudong Cai, 2011, Amino Acids.

Construction and Deciphering of Human Phosphorylation-Mediated Signaling Transduction Networks.

Lu Xie, Menghuan Zhang, Lishun Wang, 2015, Journal of proteome research.

Identification and target prediction of miRNAs specifically expressed in rat neural tissue

Lu Xie, Li Zhu, Yi-xue Li, 2009, BMC Genomics.

Integrative Analysis of Transcriptional Regulatory Network and Copy Number Variation in Intrahepatic Cholangiocarcinoma

Wei Li, Lu Xie, Baofeng Lian, 2014, PloS one.

Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma

Mingwei Liu, Weimin Zhu, Jia Fan, 2019, Nature.

Integrated Analysis of Mutation Data from Various Sources Identifies Key Genes and Signaling Pathways in Hepatocellular Carcinoma

Lu Xie, Baofeng Lian, Yingjun Zhao, 2014, PloS one.

iAPSL-IF: Identification of Apoptosis Protein Subcellular Location Using Integrative Features Captured from Amino Acid Sequences

Lu Xie, Lanming Chen, Lu Xie, 2018, International journal of molecular sciences.