J. Wayman

发表

Improving designer glycan production in Escherichia coli through model-guided metabolic engineering

J. Varner, T. J. Mansell, J. Wayman, 2019, Metabolic engineering communications.

Improving designer glycan production in Escherichia coli through model-guided metabolic engineering

J. Varner, T. J. Mansell, J. Wayman, 2017, bioRxiv.

Modeling and Analysis of Hormone and Mitogenic Signal Integration in Prostate Cancer

J. Varner, J. Wayman, M. DeLisa, 2016, bioRxiv.

Toward a genome scale sequence specific dynamic model of cell-free protein synthesis in Escherichia coli

J. Varner, J. Wayman, J. Swartz, 2017, bioRxiv.

Toward a genome scale sequence specific dynamic model of cell-free protein synthesis in Escherichia coli

J. Varner, J. Wayman, J. Swartz, 2017, bioRxiv.

Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis

J. Varner, J. Wayman, J. Swartz, 2017, bioRxiv.

Dynamic Modeling of Cell-Free Biochemical Networks Using Effective Kinetic Models

Jeffrey D. Varner, Adithya Sagar, J. Varner, 2015 .

Topoisomerase 1 inhibition therapy protects against SARS-CoV-2-induced inflammation and death in animal models

S. Chanda, M. Weirauch, D. Kaufman, 2020, bioRxiv.

maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

M. Weirauch, A. Barski, Emily R. Miraldi, 2022, bioRxiv.

Alveolar epithelial progenitor cells drive lung regeneration via dynamic changes in chromatin topology modulated by lineage-specific Nkx2-1 activity

Emily R. Miraldi, J. Wayman, J. Bridges, 2022, bioRxiv.

High-resolution promoter interaction analysis in Type 3 Innate Lymphoid Cells implicates Batten Disease gene CLN3 in Crohn’s Disease aetiology

M. Weirauch, C. Wallace, P. Fraser, 2022, bioRxiv.

High-resolution promoter interaction analysis in Type 3 Innate Lymphoid Cells implicates Batten Disease gene CLN3 in Crohn’s Disease aetiology

M. Weirauch, C. Wallace, P. Fraser, 2022, bioRxiv.

Biological systems modeling of metabolic and signaling networks

Jeffrey D. Varner, J. Varner, J. Wayman, 2013 .

Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primates

N. Salomonis, H. Deshmukh, A. Jobe, 2021, bioRxiv.

Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis.

Kara Calhoun, Jeffrey D Varner, Nicholas Horvath, 2018, ACS synthetic biology.

TOP1 inhibition therapy protects against SARS-CoV-2-induced lethal inflammation

S. Chanda, M. Weirauch, D. Kaufman, 2021, Cell.

An atlas of gene regulatory networks for T memory cells in youth and old age

A. Barski, Emily R. Miraldi, J. Wayman, 2023, bioRxiv.

An atlas of gene regulatory networks for memory CD4+ T cells in youth and old age

A. Barski, Emily R. Miraldi, J. Wayman, 2023, bioRxiv.

Elevated CD153 Expression on Aged T Follicular Helper Cell is Vital for B cell Responses

Emily R. Miraldi, J. Wayman, Maha Almanan, 2023, bioRxiv.

Accumulation of immune-suppressive CD4 + T cells in aging - tempering inflammaging at the expense of immunity.

Emily R. Miraldi, J. Wayman, C. Chougnet, 2023, Seminars in immunology.

Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis

J. Varner, J. Wayman, J. Swartz, 2017, bioRxiv.

Topoisomerase 1 inhibition therapy protects against SARS-CoV-2-1 induced inflammation and death in animal models. 2 3

S. Chanda, M. Weirauch, R. Sebra, 2020 .

Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease risk

M. Weirauch, Emily R. Miraldi, J. Wayman, 2024, bioRxiv.

Nutrient starvation activates ECM remodeling gene enhancers associated with inflammatory bowel disease risk in fibroblasts

M. Weirauch, Emily R. Miraldi, J. Wayman, 2024, bioRxiv.

Alveolar epithelial progenitor cells require Nkx2-1 to maintain progenitor-specific epigenomic state during lung homeostasis and regeneration

Emily R. Miraldi, J. Wayman, P. Kannan, 2023, Nature communications.