Vipin Kumar

发表

Sub-nucleosomal Genome Structure Reveals Distinct Nucleosome Folding Motifs

T. Ando, M. Ohno, D. Priest, 2019, Cell.

data to detect putative modifications to DNA bases Modeling kinetic rate variation in third generation DNA sequencing

Tyson A. Clark, A. Kasarskis, J. Korlach, 2012 .

BHi-Cect: a top-down algorithm for identifying the multi-scale hierarchical structure of chromosomes

Vipin Kumar, Y. Taniguchi, Simon Leclerc, 2020, Nucleic acids research.

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing

Sumit Sharma, V. Scaria, S. Sivasubbu, 2020, bioRxiv.

MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions

Jonas Paulsen, Vipin Kumar, A. Mathelier, 2022, bioRxiv.

Discovering genetic interactions bridging pathways in genome-wide association studies

M. Steinbach, Vipin Kumar, E. Schadt, 2017, Nature Communications.

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

Tyson A. Clark, J. Korlach, M. Mahajan, 2012, Nature Biotechnology.

SubPatCNV: approximate subspace pattern mining for mapping copy-number variations

Vipin Kumar, Gang Fang, Nicholas Johnson, 2015, BMC Bioinformatics.

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

Tyson A. Clark, A. Kasarskis, J. Korlach, 2013, Genome research.

Discovering genetic interactions bridging pathways in genome-wide association studies

Eric E Schadt, Michael Costanzo, Charles Boone, 2017, Nature Communications.

Putting genetic interactions in context through a global modular decomposition.

Gowtham Atluri, Sangjo Han, Gaurav Pandey, 2011, Genome research.

Prediction of replication sites in Saccharomyces cerevisiae genome using DNA segment properties: Multi-view ensemble learning (MEL) approach

Vipin Kumar, Vinod Kumar Singh, Annangarachari Krishnamachari, 2018, Biosyst..