T. Savy

发表

A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage

P. Bourgine, R. Doursat, K. Mikula, 2016, Nature Communications.

Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy

P. Bourgine, M. Luengo-Oroz, Andrés Santos, 2010, Science.

An integrated modelling framework from cells to organism based on a cohort of digital embryos

P. Bourgine, R. Doursat, T. Savy, 2016, Scientific Reports.

Combining sea urchin embryo cell lineages by error-tolerant graph matching

P. Bourgine, M. Luengo-Oroz, T. Savy, 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements

P. Bourgine, M. Luengo-Oroz, T. Savy, 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification

Carlos Castro-Gonzalez, Camilo Melani, Andres Santos, 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

3D Cell Image Segmentation by Modified Subjective Surface Method

K. Mikula, T. Savy, N. Peyriéras, 2020 .

Quantification of cell behaviours and computational modelling show that cell directional behaviours drive zebrafish pectoral fin morphogenesis

R. Doursat, T. Savy, N. Peyriéras, 2020, bioRxiv.

ZeGlobalTox: An Innovative Approach to Address Organ Drug Toxicity Using Zebrafish

Thierry Savy, T. Savy, J. Terriente, 2017, International journal of molecular sciences.

Unraveling the embryonic fate map through the mechanical signature of cells and their trajectories

Juan Carlos del Alamo, J. M. Goicolea, P. Bourgine, 2021 .

High-content analysis of larval phenotypes for the screening of xenobiotic toxicity using Phallusia mammillata embryos.

T. Savy, N. Peyriéras, R. Dumollard, 2021, Aquatic toxicology.

Dokmegang, Joel and Nguyen, Hanh and Kardash, Elena and Savy, Thierry and Cavaliere, Matteo and Peyriéras, Nadine and Doursat, René (2021) Quantification of cell behaviors and computational modelling show that cell directional behaviors drive zebrafish pectoral fin

Cavaliere, R. Doursat, T. Savy, 2021 .

Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis

J. Joly, F. Jamen, T. Savy, 2013, Development.

Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

J. Clarke, T. Savy, N. Peyriéras, 2018, bioRxiv.

A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis

Andrés Santos, Miguel A. Luengo-Oroz, Louise Duloquin, 2014, PLoS Comput. Biol..

Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate

J. Clarke, T. Savy, N. Peyriéras, 2018, Scientific Reports.

Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction

K. Mikula, T. Savy, Robert Spir, 2017, eLife.

Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos

María J. Ledesma-Carbayo, Paul Bourgine, Andrés Santos, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Dynamic fate map of hindbrain rhombomeres in zebrafish

T. Savy, S. Desnoulez, M. Frain, 2023, bioRxiv.

$3D+t$ Morphological Processing: Applications to Embryogenesis Image Analysis

P. Bourgine, M. Luengo-Oroz, M. Ledesma-Carbayo, 2012, IEEE Transactions on Image Processing.

Methodology for Reconstructing Early Zebrafish Development From In Vivo Multiphoton Microscopy

Andrés Santos, David Pastor-Escuredo, Miguel A. Luengo-Oroz, 2012, IEEE Transactions on Image Processing.

Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos

P. Bourgine, M. Luengo-Oroz, M. Ledesma-Carbayo, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Processing pipeline for digitalizing the lineage tree of early zebrafish embryogenesis from multiharmonic imaging

Miguel A. Luengo-Oroz, Louise Duloquin, María J. Ledesma-Carbayo, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis

Nadine Peyriéras, René Doursat, Matteo Cavaliere, 2021, Bioinform..

Streams of Media Issues, Monitoring World Food Security

Camille Roth, Andrei Mogoutov, Jean-Philippe Cointet, 2011 .