E. Ferrada

发表

Growth Temperature and Genome Size in Bacteria Are Negatively Correlated, Suggesting Genomic Streamlining During Thermal Adaptation

Andreas Wagner, Evandro Ferrada, Aditya Barve, 2013, Genome biology and evolution.

Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

Eric J. Hayden, A. Wagner, E. Ferrada, 2011, Nature.

Environmental Fluctuations and Their Consequences for the Evolution of Phenotypic Diversity

E. Ferrada, M. Fuentes, 2017, Front. Phys..

Evolutionary Innovations and the Organization of Protein Functions in Genotype Space

A. Wagner, E. Ferrada, 2010, PloS one.

Computational Characterization of the mtORF of Pocilloporid Corals: Insights into Protein Structure and Function in Stylophora Lineages from Contrasting Environments

E. Ferrada, Jean‐François Flot, E. Banguera-Hinestroza, 2019, Genes.

structure models energy functions improve error detection in near-native protein Nonbonded terms extrapolated from nonlocal knowledge-based

F. Melo, E. Ferrada, 2022 .

Stoichiometry and conditional stability constants of Cu(II) or Zn(II) clioquinol complexes; implications for Alzheimer's and Huntington's disease therapy.

J. Huidobro-Toro, E. Ferrada, B. Loeb, 2007, Neurotoxicology.

A structure and evolutionary-based classification of solute carriers

G. Superti-Furga, E. Ferrada, 2022, iScience.

Functional characterization of SLC39 family members ZIP5 and ZIP10 in overexpressing HEK293 cells reveals selective copper transport activity

E. Ferrada, Álvaro Inglés-Prieto, Marcello Polesel, 2022, BioMetals.

Quantifying the Mutational Robustness of Protein-Coding Genes

E. Ferrada, 2021, Journal of Molecular Evolution.

The Site-Specific Amino Acid Preferences of Homologous Proteins Depend on Sequence Divergence

E. Ferrada, 2018, Genome biology and evolution.

The Site-Speciﬁc Amino Acid Preferences of Homologous Proteins Depend on Sequence Divergence

E. Ferrada, 2019 .

The Effects of Stabilizing and Directional Selection on Phenotypic and Genotypic Variation in a Population of RNA Enzymes

Eric J. Hayden, A. Wagner, E. Ferrada, 2014, Journal of Molecular Evolution.

Early emergence of negative regulation of the tyrosine kinase Src by the C-terminal Src kinase

D. Fowler, E. Ferrada, Barbara Taskinen, 2017, The Journal of Biological Chemistry.

A comparison of genotype-phenotype maps for RNA and proteins.

Andreas Wagner, Evandro Ferrada, A. Wagner, 2012, Biophysical journal.

Protein robustness promotes evolutionary innovations on large evolutionary time-scales

Andreas Wagner, Evandro Ferrada, A. Wagner, 2008, Proceedings of the Royal Society B: Biological Sciences.

The Amino Acid Alphabet and the Architecture of the Protein Sequence-Structure Map. I. Binary Alphabets

Evandro Ferrada, E. Ferrada, 2014, PLoS Comput. Biol..

Gene Families, Epistasis and the Amino Acid Preferences of Protein Homologs

E. Ferrada, 2019, Evolutionary bioinformatics online.

StAR: a simple tool for the statistical comparison of ROC curves

Francisco Melo, Evandro Ferrada, Tomás Norambuena, 2008, BMC Bioinformatics.

Effective knowledge‐based potentials

Francisco Melo, Evandro Ferrada, F. Melo, 2009, Protein science : a publication of the Protein Society.

A Knowledge-Based Potential with an Accurate Description of Local Interactions Improves Discrimination between Native and Near-Native Protein Conformations

Evandro Ferrada, Ismael A. Vergara, Francisco Melo, 2007, Cell Biochemistry and Biophysics.

Nonbonded terms extrapolated from nonlocal knowledge‐based energy functions improve error detection in near‐native protein structure models

Evandro Ferrada, Francisco Melo, F. Melo, 2007, Protein science : a publication of the Protein Society.

A comparison of genotype-phenotype maps for RNA and proteins.

A. Wagner, E. Ferrada, 2012, Biophysical journal.