Hugo Naya

发表

Inferring parameters shaping amino acid usage in prokaryotic genomes via Bayesian MCMC methods.

D. Gianola, Hugo Naya, H. Romero, 2006, Molecular biology and evolution.

Reduced Set of Virulence Genes Allows High Accuracy Prediction of Bacterial Pathogenicity in Humans

Gustavo E. Vazquez, Gregorio Iraola, Hugo Naya, 2012, PloS one.

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

Bertrand Servin, Hugo Naya, Magali SanCristobal, 2012, Genetics.

Fine-tuning the metabolic rewiring and adaptation of translational machinery during an epithelial-mesenchymal transition in breast cancer cells

Z. Ignatova, Hugo Naya, G. Flouriot, 2020, Cancer & Metabolism.

lncRNAs are associated with polysomes during adipose-derived stem cell differentiation.

Hugo Naya, L. Spangenberg, B. Dallagiovanna, 2017, Gene.

Correlations between genomic GC levels and optimal growth temperatures in prokaryotes

G. Bernardi, Hugo Naya, H. Romero, 2004, FEBS letters.

The correlation between genomic G+C and optimal growth temperature of prokaryotes is robust: a reply to Marashi and Ghalanbor.

G. Bernardi, Hugo Naya, H. Romero, 2005, Biochemical and biophysical research communications.

Genomic GC level, optimal growth temperature, and genome size in prokaryotes.

G. Bernardi, Hugo Naya, H. Romero, 2006, Biochemical and biophysical research communications.

Aerobiosis Increases the Genomic Guanine Plus Cytosine Content (GC%) in Prokaryotes

Hugo Naya, H. Romero, H. Musto, 2002, Journal of Molecular Evolution.

Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree

José Crossa, Daniel Gianola, Gustavo de los Campos, 2009, Genetics.

Gene expression analysis of human adipose tissue-derived stem cells during the initial steps of in vitro osteogenesis

Alejandro Correa, Hugo Naya, Hugo Naya, 2018, Scientific Reports.

Prediction of Complex Traits: Robust Alternatives to Best Linear Unbiased Prediction

D. Gianola, Hugo Naya, C. Schön, 2018, Front. Genet..

Ordre et désordre dans les génomes bactériens

Manolo Gouy, Hugo Naya, A. Abraham, 2005 .

Deep sequencing discovery of causal mtDNA mutations in a patient with unspecific neurological disease.

Hugo Naya, L. Spangenberg, C. Robello, 2019, Mitochondrion.

Brain size and thermoregulation during the evolution of the genus Homo.

Hugo Naya, D. Naya, E. Lessa, 2016, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.

Genomic Evidence for the Emergence and Evolution of Pathogenicity and Niche Preferences in the Genus Campylobacter

Hugo Naya, G. Iraola, F. Paolicchi, 2014, Genome biology and evolution.

Indigenous Ancestry and Admixture in the Uruguayan Population

J. Novembre, Jong-Yeon Shin, Hugo Naya, 2021, Frontiers in Genetics.

Toward a global database for the molecular typing of Saccharomyces cerevisiae strains.

Hugo Naya, S. Jubany, F. Carrau, 2008, FEMS yeast research.

Assessment of Poisson, probit and linear models for genetic analysis of presence and number of black spots in Corriedale sheep.

D. Gianola, G. de los Campos, F. Peñagaricano, 2011, Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie.

Historical origins and zoonotic potential of avian influenza virus H9N2 in Tunisia revealed by Bayesian analysis and molecular characterization

Hugo Naya, A. Ghram, M. Houimel, 2020, Archives of Virology.

First complete mitochondrial genome of the South American annual fish Austrolebias charrua (Cyprinodontiformes: Rivulidae): peculiar features among cyprinodontiforms mitogenomes

Hugo Naya, G. García, N. Rego, 2015, BMC Genomics.

The presence of an embryo affects day 14 uterine transcriptome depending on the nutritional status in sheep. b. Immune system and uterine remodeling.

J. Loor, K. Shahzad, Hugo Naya, 2020, Theriogenology.

Direct role of Bardet–Biedl syndrome proteins in transcriptional regulation

N. Katsanis, J. Badano, Hugo Naya, 2012, Journal of Cell Science.

Data and knowledge infrastructures for scientific research on humans and health in Uruguay: an experience report on a critical constructive design process

Hugo Naya, C. Simões, Silvia Méndez, 2022, Informatio.

Wedding higher taxonomic ranks with metabolic signatures coded in prokaryotic genomes

Hugo Naya, G. Iraola, 2016, bioRxiv.

Translational selection on codon usage in the genus Aspergillus.

Hugo Naya, H. Musto, T. Fernández-Calero, 2012, Gene.

Genomic GC content prediction in prokaryotes from a sample of genes.

Hugo Naya, H. Romero, H. Musto, 2005, Gene.

Novel frameshift mutation in LIS1 gene is a probable cause of lissencephaly: a case report

Hugo Naya, L. Spangenberg, M. Graña, 2022, BMC Pediatrics.

Do Molecular Markers Inform About Pleiotropy?

D. Gianola, G. de los Campos, D. Sorensen, 2015, Genetics.

The embryo affects day 14 uterine transcriptome depending on nutritional status in sheep. a. Metabolic adaptation to pregnancy in nourished and undernourished ewes.

J. Loor, K. Shahzad, Hugo Naya, 2020, Theriogenology.

Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota

F. Mégraud, S. Lévesque, Nitin Kumar, 2017, Nature Communications.

Indigenous Ancestry and Admixture in the Uruguayan Population

J. Novembre, Jong-Yeon Shin, Hugo Naya, 2021, bioRxiv.

Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Hugo Naya, G. Iraola, L. Berná, 2018, BMC Genomics.

High-throughput screening using pseudotyped lentiviral particles: a strategy for the identification of HIV-1 inhibitors in a cell-based assay.

R. Bruzzone, F. Nan, Hugo Naya, 2009, Antiviral research.

Complete Genome Sequence of Campylobacter fetus subsp. venerealis Biovar Intermedius, Isolated from the Prepuce of a Bull

D. Harris, Hugo Naya, G. Iraola, 2013, Genome Announcements.

Gene expression analysis identifies new candidate genes associated with the development of black skin spots in Corriedale sheep

F. Peñagaricano, Hugo Naya, J. Urioste, 2012, Journal of Applied Genetics.

Extracellular vesicles shed by Trypanosoma cruzi are linked to small RNA pathways, life cycle regulation, and susceptibility to infection of mammalian cells

Hugo Naya, T. Souto-Padrón, W. Souza, 2013, Parasitology Research.

On the Interplay among Ambient Temperature, Basal Metabolic Rate, and Body Mass

Hugo Naya, C. R. White, D. Naya, 2018, The American Naturalist.

Genome-Wide Association Studies with a Genomic Relationship Matrix: A Case Study with Wheat and Arabidopsis

D. Gianola, Hugo Naya, M. Fariello, 2016, G3: Genes, Genomes, Genetics.

Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene.

Å. Borg, N. Loman, J. Vallon-Christersson, 2011, Cancer research.

Small RNAs analysis in CLL reveals a deregulation of miRNA expression and novel miRNA candidates of putative relevance in CLL pathogenesis

Hugo Naya, H. Persson, C. Rovira, 2008, Leukemia.

Cardiomyogenic differentiation is fine-tuned by differential mRNA association with polysomes

Hugo Naya, L. Spangenberg, B. Dallagiovanna, 2019, BMC Genomics.

Polysome profiling followed by RNA-seq of cardiac differentiation stages in hESCs

Hugo Naya, Hugo Naya, L. Spangenberg, 2018, Scientific Data.

Role of Alternative Polyadenylation during Adipogenic Differentiation: An In Silico Approach

Hugo Naya, L. Spangenberg, B. Dallagiovanna, 2013, PloS one.

Molecular and Cellular Pathobiology Identification of New MicroRNAs in Paired Normal and Tumor Breast Tissue Suggests a Dual Role for the ERBB 2 / Her 2 Gene

Å. Borg, N. Loman, J. Vallon-Christersson, 2010 .

Activation of the PI3K/AKT pathway by microRNA-22 results in CLL B-cell proliferation

Hugo Naya, T. Fernández-Calero, P. Oppezzo, 2014, Leukemia.

Immunoglobulin heavy chain V-D-J gene rearrangement and mutational status in Uruguayan patients with chronic lymphocytic leukemia

Hugo Naya, O. Pritsch, G. Dighiero, 2010, Leukemia & lymphoma.

Gene expression analysis of human adipose tissue-derived stem cells during the initial steps of in vitro osteogenesis

Hugo Naya, L. Spangenberg, B. Dallagiovanna, 2018, Scientific Reports.

Evaluation of different approaches for missing data imputation on features associated to genomic data

Gustavo E. Vazquez, Hugo Naya, L. Spangenberg, 2021, BioData Mining.

Trends in Codon and Amino Acid Usage in Thermotoga maritima

Hugo Naya, Hugo Naya, H. Romero, 2002, Journal of Molecular Evolution.

Translational selection shapes codon usage in the GC‐rich genome of Chlamydomonas reinhardtii

Hugo Naya, H. Romero, H. Musto, 2001, FEBS letters.

Increased expression of CDKN1A/p21 in HIV-1 controllers is correlated with upregulation of ZC3H12A/MCPIP1

Hugo Naya, L. Spangenberg, V. Veloso, 2020, Retrovirology.

Understanding evolutionary variation in basal metabolic rate: An analysis in subterranean rodents.

Hugo Naya, D. Naya, F. Luna, 2017, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.

HOW DOES EVOLUTIONARY VARIATION IN BASAL METABOLIC RATES ARISE? A STATISTICAL ASSESSMENT AND A MECHANISTIC MODEL

Hugo Naya, L. Spangenberg, F. Bozinovic, 2013, Evolution; international journal of organic evolution.

Modelling female fertility traits in beef cattle using linear and non‐linear models

F. Peñagaricano, Hugo Naya, J. Urioste, 2017, Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie.

Genetic variability in calving success in Aberdeen Angus cows under extensive recording.

D. Gianola, Hugo Naya, J. Urioste, 2007, Animal : an international journal of animal bioscience.

Transcriptome Sequencing Reveals Wide Expression Reprogramming of Basal and Unknown Genes in Leptospira biflexa Biofilms

Hugo Naya, G. Iraola, L. Spangenberg, 2016, mSphere.

Liver functional genomics in beef cows on grazing systems: novel genes and pathways revealed.

G. Rosa, Hugo Naya, M. Carriquiry, 2014, Physiological genomics.

Using high resolution melting analysis to identify variation of NPY, LEP and IGF-1 genes in Angus cattle

F. Peñagaricano, Hugo Naya, M. Carriquiry, 2012 .

First complete mitochondrial genome of the South American annual fish Austrolebias charrua (Cyprinodontiformes: Rivulidae): peculiar features among cyprinodontiforms mitogenomes

Hugo Naya, G. García, N. Rego, 2015, BMC Genomics.

Clinical prediction of pathogenic variants in non-coding regions of the human genome.

Hugo Naya, L. Spangenberg, B. O. Petrazzini, 2022, medRxiv.

Campylobacter geochelonis sp. nov. isolated from the western Hermann's tortoise (Testudo hermanni hermanni).

Hugo Naya, G. Iraola, A. Piccirillo, 2016, International journal of systematic and evolutionary microbiology.

Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota

F. Mégraud, S. Lévesque, Nitin Kumar, 2017, Nature Communications.

Oxygen and Guanine–Cytosine Profiles in Marine Environments

Hugo Naya, H. Romero, H. Musto, 2009, Journal of Molecular Evolution.

Search for an aetiological virus candidate in chronic lymphocytic leukaemia by extensive transcriptome analysis

Hugo Naya, H. Persson, C. Rovira, 2012, British journal of haematology.

Polysome profiling shows extensive posttranscriptional regulation during human adipocyte stem cell differentiation into adipocytes.

S. Goldenberg, Hugo Naya, L. Spangenberg, 2013, Stem cell research.

Using haplotype differentiation among hierarchically structured populations for the detection of selection signatures

B. Servin, M. Sancristobal, Hugo Naya, 2012, 1210.7583.

Whole transcriptome analysis of multiple Sclerosis patients reveals active inflammatory profile in relapsing patients and downregulation of neurological repair pathways in secondary progressive cases.

Hugo Naya, L. Spangenberg, H. Montenegro, 2020, Multiple sclerosis and related disorders.

Genômica comparativa e evolutiva de Leptospira

Hugo Naya, Natalia Rego, Guillermo Lamolle, 2007 .

Evolutionary and comparative genomics of Leptospira

Hugo Naya, F. Alvarez-Valin, Guillermo Lamolle, 2007 .

Correspondence analysis of amino acid usage within the family Bacillaceae.

Hugo Naya, H. Romero, H. Musto, 2004, Biochemical and biophysical research communications.

Mining of public sequencing databases supports a non-dietary origin for putative foreign miRNAs: underestimated effects of contamination in NGS

Hugo Naya, C. Rovira, J. Tosar, 2014, RNA.

Composition Profile of the Human Genome at the Chromosome Level

Hugo Naya, Hugo Naya, H. Romero, 2009, Journal of biomolecular structure & dynamics.

Evaluation of different approaches for missing data imputation on features associated to genomic data

Hugo Naya, L. Spangenberg, B. O. Petrazzini, 2021, BioData Mining.

Computational and mitochondrial functional studies of novel compound heterozygous variants in SPATA5 gene support a causal link with epileptogenic encephalopathy

Hugo Naya, L. Spangenberg, T. Fernández-Calero, 2023, Human Genomics.

L2-Boosting algorithm applied to high-dimensional problems in genomic selection.

Kent A Weigel, Daniel Gianola, Hugo Naya, 2010, Genetics research.

A comparison between Poisson and zero-inflated Poisson regression models with an application to number of black spots in Corriedale sheep

Daniel Gianola, Hugo Naya, Mariana Rodrigues-Motta, 2008, Genetics Selection Evolution.

Identifying associations between amino acid changes and meta information in alignments

Kay Nieselt, Florian Battke, Hugo Naya, 2011, Bioinform..

Comparative genomic analysis of dinucleotide repeats in Tritryps.

Hugo Naya, N. Williams, B. Garat, 2011, Gene.

Sequencing and Annotation of the Genome of Mycobacterium tuberculosis MYC004, a Strain Causing Meningitis in Mexico

Hugo Naya, M. S. Vázquez-Garcidueñas, G. Vázquez-Marrufo, 2018, Genome Announcements.

Thermal tolerances in rodents: species that evolved in cold climates exhibit a wider thermoneutral zone

M. Araújo, Hugo Naya, F. Ferri‐Yáñez, 2014 .

Latitudinal Patterns in Rodent Metabolic Flexibility

Hugo Naya, L. Spangenberg, F. Bozinovic, 2012, The American Naturalist.

3697G>A in MT-ND1 is a causative mutation in mitochondrial disease.

Hugo Naya, L. Spangenberg, C. Robello, 2016, Mitochondrion.

Climate change and body size trends in aquatic and terrestrial endotherms: Does habitat matter?

Hugo Naya, J. Cook, D. Naya, 2017, PloS one.

Thermal conductance and basal metabolic rate are part of a coordinated system for heat transfer regulation

Hugo Naya, L. Spangenberg, F. Bozinovic, 2013, Proceedings of the Royal Society B: Biological Sciences.

Climatic and genetic effects in seasonal measurements of colour in Corriedale wool

Hugo Naya, J. Urioste, A. L. Sánchez, 2021 .

Polysome profiling shows the identity of human adipose-derived stromal/stem cells in detail and clearly distinguishes them from dermal fibroblasts.

S. Goldenberg, Hugo Naya, L. Spangenberg, 2014, Stem cells and development.

Historical origins and zoonotic potential of avian influenza virus H9N2 in Tunisia revealed by Bayesian analysis and molecular characterization

Hugo Naya, A. Ghram, M. Houimel, 2020, Archives of Virology.

Increased expression of CDKN1A/p21 in HIV-1 controllers is correlated with upregulation of ZC3H12A/MCPIP1

Hugo Naya, L. Spangenberg, V. Veloso, 2020, Retrovirology.

Novel frameshift mutation in PURA gene causes severe encephalopathy of unclear cause

Hugo Naya, L. Spangenberg, M. Graña, 2021, Molecular genetics & genomic medicine.

Trends of Amino Acid Usage in the Proteins from the Human Genome

Hugo Naya, H. Romero, H. Musto, 2007, Journal of biomolecular structure & dynamics.

Genotype×production environment interaction for weaning weight in Angus populations of Brazil and Uruguay

Hugo Naya, J. Urioste, M. M. Alencar, 2013 .

Whole genome sequencing reveals a frameshift mutation and a large deletion in YY1AP1 in a girl with a panvascular artery disease

Jeong-Sun Seo, Jong-Yeon Shin, Hugo Naya, 2021, Human Genomics.

Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers.

D Gianola, K A Weigel, G J M Rosa, 2009, Journal of dairy science.

From medical records to research papers: A literature analysis pipeline for supporting medical genomic diagnosis processes

Aiala Rosá, Fernando López Bello, Hugo Naya, 2019, Informatics in Medicine Unlocked.

Whole-Genome Sequences of Mycobacterium bovis Strain MbURU-001, Isolated from Fresh Bovine Infected Samples

Hugo Naya, G. Iraola, L. Berná, 2015, Genome Announcements.

Profiling of small RNA cargo of extracellular vesicles shed by Trypanosoma cruzi reveals a specific extracellular signature.

Hugo Naya, H. Persson, C. Rovira, 2015, Molecular and biochemical parasitology.

An easy way to incorporate phylogenetic uncertainty in the comparative model

Hugo Naya, H. Romero, L. Spangenberg, 2009 .