J. Krzycki

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The Amber Codon in the Gene Encoding the Monomethylamine Methyltransferase Isolated from Methanosarcina barkeri Is Translated as a Sense Codon*

C. James, T. Ferguson, J. Leykam, 2001, The Journal of Biological Chemistry.

Pyrrolysine Encoded by UAG in Archaea: Charging of a UAG-Decoding Specialized tRNA

Joseph A. Krzycki, C. James, J. Krzycki, 2002, Science.

A New UAG-Encoded Residue in the Structure of a Methanogen Methyltransferase

C. James, T. Ferguson, J. Krzycki, 2002, Science.

The genome of M. acetivorans reveals extensive metabolic and physiological diversity.

Robert H. White, B. Birren, C. Nusbaum, 2002, Genome research.

Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales

D. Hoyt, J. Krzycki, D. Cole, 2016, Nature Microbiology.

The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine

J. Krzycki, K. Green-Church, Liwen Zhang, 2011, Nature.

The Residue Mass of L-Pyrrolysine in Three Distinct Methylamine Methyltransferases*

J. Krzycki, J. Wolff, K. Green-Church, 2005, Journal of Biological Chemistry.

MtcB, a member of the MttB superfamily from the human gut acetogen Eubacterium limosum, is a cobalamin-dependent carnitine demethylase

J. Krzycki, E. Behrman, D. Kountz, 2020, The Journal of Biological Chemistry.

MtpB, a member of the MttB superfamily from the human intestinal acetogen Eubacterium limosum, catalyzes proline betaine demethylation

J. W. Picking, J. Krzycki, E. Behrman, 2019, The Journal of Biological Chemistry.

The path of lysine to pyrrolysine.

J. Krzycki, 2013, Current opinion in chemical biology.

PylSn and the Homologous N-terminal Domain of Pyrrolysyl-tRNA Synthetase Bind the tRNA That Is Essential for the Genetic Encoding of Pyrrolysine*

J. Krzycki, Ruisheng Jiang, 2012, The Journal of Biological Chemistry.

Characterization of a Methanosarcina acetivorans mutant unable to translate UAG as pyrrolysine

J. Krzycki, W. Metcalf, Ross C. Larue, 2006, Molecular microbiology.

Paramagnetic centers of carbon monoxide dehydrogenase from aceticlastic Methanosarcina barkeri.

J. Krzycki, R. Prince, L. Mortenson, 1989, The Journal of biological chemistry.

Involvement of the "A" isozyme of methyltransferase II and the 29-kilodalton corrinoid protein in methanogenesis from monomethylamine

J. Krzycki, S. A. Burke, 1995, Journal of bacteriology.

Specific Roles of Methylcobamide:Coenzyme M Methyltransferase Isozymes in Metabolism of Methanol and Methylamines in Methanosarcina barkeri

J. Krzycki, D. Grahame, D. J. Ferguson, 1996, The Journal of Biological Chemistry.

Reconstitution of Monomethylamine:Coenzyme M Methyl Transfer with a Corrinoid Protein and Two Methyltransferases Purified fromMethanosarcina barkeri *

J. Krzycki, S. A. Burke, 1997, The Journal of Biological Chemistry.

Reconstitution of trimethylamine-dependent coenzyme M methylation with the trimethylamine corrinoid protein and the isozymes of methyltransferase II from Methanosarcina barkeri

J. Krzycki, D. J. Ferguson, Donald J. Ferguson, 1997, Journal of bacteriology.

Function of genetically encoded pyrrolysine in corrinoid-dependent methylamine methyltransferases.

J. Krzycki, 2004, Current opinion in chemical biology.

Direct charging of tRNACUA with pyrrolysine in vitro and in vivo

David G. Longstaff, J. Krzycki, M. Chan, 2004, Nature.

Characterization and purification of carbon monoxide dehydrogenase from Methanosarcina barkeri

J. Zeikus, J. Krzycki, 1984, Journal of bacteriology.

Single-carbon chemistry of acetogenic and methanogenic bacteria.

J. Zeikus, J. Krzycki, R. Kerby, 1985, Science.

EPR observation of carbon monoxide dehydrogenase, methylreductase and corrinoid in intact Methanosarcina barkeri during methanogenesis from acetate

J. Krzycki, R. Prince, 1990 .

Stable Carbon Isotope Fractionation by Methanosarcina barkeri during Methanogenesis from Acetate, Methanol, or Carbon Dioxide-Hydrogen

J. Zeikus, J. Krzycki, W. Kenealy, 1987, Applied and environmental microbiology.

Acetate catabolism by Methanosarcina barkeri: Hydrogen-dependent methane production from acetate by a soluble cell protein fraction

J. Zeikus, J. Krzycki, 1984 .

Quantification of corrinoids in methanogenic bacteria

J. Zeikus, J. Krzycki, 1980, Current Microbiology.

Acetate-dependent methylation of two corrinoid proteins in extracts of Methanosarcina barkeri

J. Krzycki, X. Cao, Xianjun Cao, 1991, Journal of bacteriology.

Analysis of hydrogen metabolism in Methanosarcina barkeri: regulation of hydrogenase and role of CO-dehydrogenase in H2 production

J. Zeikus, J. Krzycki, L. Bhatnagar, 1987 .

Hydrogen metabolism during methanogenesis from acetate by Methanosarcina barkeri

J. Zeikus, R. Conrad, J. Krzycki, 1987 .

Targeted curation of the gut microbial gene content modulating human cardiovascular disease

Elizabeth K. Eder, D. Hoyt, M. Lipton, 2022, bioRxiv.

Characterization andPurification ofCarbonMonoxide Dehydrogenase fromMethanosarcina barkeri

J. Krzycki, Andj . G. Zeikus, 1984 .

Characterization and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei.

R. Morgan, G. Wilson, J. Reeve, 1989, Gene.

Characterization and cloning of Mwlal (GCN,GC), a new type-11 restriction-modification system from Methanobacterium wolfei (Archaebacterium; methanogen; thermophile; R-M system; recombinant DNA; endonuclease; methyl- transferase; E. coli; plasmid pBR322)

G. Wilson, J. Reeve, J. Krzycki, 1989 .

The MtsA Subunit of the Methylthiol:Coenzyme M Methyltransferase of Methanosarcina barkeri Catalyses Both Half-reactions of Corrinoid-dependent Dimethylsulfide: Coenzyme M Methyl Transfer*

J. Krzycki, L. Paul, T. Tallant, 2001, The Journal of Biological Chemistry.

Differential in vitro methylation and synthesis of the 480-kilodalton corrinoid protein in Methanosarcina barkeri grown on different substrates

J. Krzycki, J. Kremer, C. Frazier, 1994, Journal of bacteriology.

Assay of methylotrophic methyltransferases from methanogenic archaea.

David G. Longstaff, J. Krzycki, D. J. Ferguson, 2011, Methods in enzymology.

Isolation of two novel corrinoid proteins from acetate-grown Methanosarcina barkeri

J. Krzycki, X. Cao, J. Kremer, 1993, Journal of bacteriology.

Structure of the α2ε2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarbonylase/synthase complex

J. Krzycki, B. Hao, W. Gong, 2008, Proceedings of the National Academy of Sciences.

Support for Nickel as the Labile Metal in the A‐center of the M. Barkeri Acetyl‐CoA Decarbonylase/Synthase Complex

X. Zhong, J. Krzycki, M. Chan, 2004 .

HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histones.

J. Reeve, J. Krzycki, R. Lurz, 1990, Proceedings of the National Academy of Sciences of the United States of America.

A hydrogenase-linked gene in Methanobacterium thermoautotrophicum strain delta H encodes a polyferredoxin.

C. Walsh, J. Brown, J. Reeve, 1989, Proceedings of the National Academy of Sciences of the United States of America.

Reconstitution of Monomethylamine:Coenzyme M methyl transfer with a corrinoid protein and two methyltransferases purified from Methanosarcina barkeri.

J. Krzycki, S. A. Burke, 1997, The Journal of biological chemistry.

Reconstitution of Dimethylamine:Coenzyme M Methyl Transfer with a Discrete Corrinoid Protein and Two Methyltransferases Purified fromMethanosarcina barkeri *

N. Gorlatova, J. Krzycki, D. Grahame, 2000, The Journal of Biological Chemistry.

Insights into pyrrolysine function from structures of a trimethylamine methyltransferase and its corrinoid protein complex

J. Krzycki, M. Chan, Jitesh A. Soares, 2023, Communications Biology.

HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histones.

J. Reeve, J. Krzycki, R. Lurz, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Selenocysteine, Pyrrolysine, and the Unique Energy Metabolism of Methanogenic Archaea

M. Rother, J. Krzycki, 2010, Archaea.

Functional context, biosynthesis, and genetic encoding of pyrrolysine.

J. Krzycki, M. A. Gaston, Ruisheng Jiang, 2011, Current opinion in microbiology.

Clustered Genes Encoding the Methyltransferases of Methanogenesis from Monomethylamine

Joseph A. Krzycki, J. Krzycki, Stephen A. Burke, 1998, Journal of bacteriology.

Steric course of the reduction of ethyl coenzyme M to ethane catalyzed by methyl coenzyme M reductase from Methanosarcina barkeri

J. Krzycki, Y. Ahn, H. Floss, 1991 .

Methylthiol:coenzyme M methyltransferase from Methanosarcina barkeri, an enzyme of methanogenesis from dimethylsulfide and methylmercaptopropionate

J. Krzycki, T. Tallant, 1997, Journal of bacteriology.

Sequence and transcript analysis of a novel Methanosarcina barkeri methyltransferase II homolog and its associated corrinoid protein homologous to methionine synthase

J. Krzycki, L. Paul, 1996, Journal of bacteriology.

Reactivity and chemical synthesis of L-pyrrolysine- the 22(nd) genetically encoded amino acid.

J. Gallucci, T. Ferguson, J. Krzycki, 2004, Chemistry & biology.

The Trimethylamine Methyltransferase Gene and Multiple Dimethylamine Methyltransferase Genes of Methanosarcina barkeri Contain In-Frame and Read-Through Amber Codons

J. Krzycki, L. Paul, D. J. Ferguson, 2000, Journal of bacteriology.

Translation of UAG as Pyrrolysine

J. Krzycki, 2010 .

A natural genetic code expansion cassette enables transmissible biosynthesis and genetic encoding of pyrrolysine

David G. Longstaff, J. Krzycki, Ross C. Larue, 2007, Proceedings of the National Academy of Sciences.

In vivo contextual requirements for UAG translation as pyrrolysine

David G. Longstaff, J. Krzycki, Liwen Zhang, 2007, Molecular microbiology.

The direct genetic encoding of pyrrolysine.

J. Krzycki, 2005, Current opinion in microbiology.

Kinetic and substrate complex characterization of RamA, a corrinoid protein reductive activase from Methanosarcina barkeri.

J. Krzycki, Ruisheng Jiang, Katherine A Huening, 2020, FEMS microbiology letters.

Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl-tRNA synthetase.

R. Jain, J. Krzycki, M. Chan, 2008, Biochemical and biophysical research communications.

Isolation and characterization of a new, methylotrophic, acidogenic anaerobe, the marburg strain

T. E. Thompson, J. Zeikus, J. Krzycki, 1980, Current Microbiology.

Acetate catabolism by Methanosarcina barkeri: evidence for involvement of carbon monoxide dehydrogenase, methyl coenzyme M, and methylreductase

J. Zeikus, J. Krzycki, L. Lehman, 1985, Journal of bacteriology.

Comparison of Unitrophic and Mixotrophic Substrate Metabolism by an Acetate-Adapted Strain of Methanosarcina barkeri

J. Zeikus, J. Krzycki, R. Wolkin, 1982, Journal of bacteriology.

The MttB superfamily member MtyB from the human gut symbiont Eubacterium limosum is a cobalamin-dependent γ-butyrobetaine methyltransferase

J. Krzycki, D. Kountz, Liwen Zhang, 2021, The Journal of biological chemistry.

A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase

J. Krzycki, D. Kountz, Tomislav Ticak, 2014, Proceedings of the National Academy of Sciences.

RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea*

G. Gottschalk, T. Ferguson, J. Krzycki, 2009, Journal of Biological Chemistry.

Ring-cleaving cyanuric acid amidohydrolase activity in the atrazine-mineralizing Ralstonia basilensis M91-3

J. Krzycki, S. Traina, O. Tuovinen, 2005 .

A survey of cytosine and cytidine salvage in fungi

J. Krzycki, K. Nickerson, R. K. Kulkarni, 1980 .

Specificity of pyrrolysyl-tRNA synthetase for pyrrolysine and pyrrolysine analogs.

David G. Longstaff, J. Krzycki, M. Chan, 2009, Journal of molecular biology.

Class I and class II lysyl‐tRNA synthetase mutants and the genetic encoding of pyrrolysine in Methanosarcina spp.

G. Gottschalk, J. Krzycki, G. Srinivasan, 2007, Molecular microbiology.

Coenzyme M methylase activity of the 480-kilodalton corrinoid protein from Methanosarcina barkeri

J. Krzycki, T. Tallant, 1996, Journal of bacteriology.

Stable Carbon Isotope Fractionation by Methanosarcina barkeri during Methanogenesis from Acetate, Methanol, or Carbon Dioxide-Hydrogen

J. Zeikus, J. Krzycki, W. Kenealy, 1987, Applied and environmental microbiology.

Specificity of pyrrolysyl-tRNA synthetase for pyrrolysine and pyrrolysine analogs.

David G. Longstaff, J. Krzycki, M. Chan, 2009, Journal of molecular biology.