J. Ferry

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The genome of M. acetivorans reveals extensive metabolic and physiological diversity.

Robert H. White, B. Birren, C. Nusbaum, 2002, Genome research.

Urkinase: Structure of Acetate Kinase, a Member of the ASKHA Superfamily of Phosphotransferases

James G. Ferry, M. Hasson, C. Ingram-Smith, 2001, Journal of bacteriology.

Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation.

Michel Dupuis, Cheryl A Kerfeld, Grover L Waldrop, 2013, Chemical reviews.

Enzymology of one-carbon metabolism in methanogenic pathways.

J. Ferry, 1999, FEMS microbiology reviews.

Role of the Fused Corrinoid/Methyl Transfer Protein CmtA during CO-Dependent Growth of Methanosarcina acetivorans

J. Ferry, V. Vepachedu, 2012, Journal of bacteriology.

A closer look at the active site of gamma-class carbonic anhydrases: high-resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila.

D. Rees, C. Kisker, J. Ferry, 1999, Biochemistry.

Methanosarcina acetivorans sp. nov., an Acetotrophic Methane-Producing Bacterium Isolated from Marine Sediments

S. F. Baron, K. Sowers, J. Ferry, 1984, Applied and environmental microbiology.

Production and Consumption of H2 during Growth of Methanosarcina spp. on Acetate

D. Lovley, J. Ferry, 1985, Applied and environmental microbiology.

Electron Transport in the Pathway of Acetate Conversion to Methane in the Marine Archaeon Methanosarcina acetivorans

Qingbo Li, T. Rejtar, B. Karger, 2006, Journal of bacteriology.

Methanosarcina acetivorans: A Model for Mechanistic Understanding of Aceticlastic and Reverse Methanogenesis

J. Ferry, 2020, Frontiers in Microbiology.

Tryptophan repressor-binding proteins from Escherichia coli and Archaeoglobus fulgidus as new catalysts for 1,4-dihydronicotinamide adenine dinucleotide-dependent amperometric biosensors and biofuel cells.

L. Gorton, J. Ferry, M. Zafar, 2009, Analytical chemistry.

WrbA from Escherichia coli and Archaeoglobus fulgidus Is an NAD(P)H:Quinone Oxidoreductase

J. Ferry, Eric Patridge, 2006, Journal of bacteriology.

Computationally Exploring and Alleviating the Kinetic Bottlenecks of Anaerobic Methane Oxidation

Matthew J. Grisewood, C. Maranas, J. Ferry, 2018, Front. Environ. Sci..

Biofuels: Microbially Generated Methane and Hydrogen

Michael J. McAnulty, T. Wood, J. Ferry, 2013 .

Anion inhibition studies of a β-carbonic anhydrase from Clostridium perfringens.

C. Supuran, A. Scozzafava, D. Vullo, 2013, Bioorganic & medicinal chemistry letters.

Properties of formate dehydrogenase in Methanobacterium formicicum

J. Ferry, N. Schauer, 1982 .

The stepwise evolution of early life driven by energy conservation.

J. Ferry, C. House, 2006, Molecular biology and evolution.

Structural and Functional Studies Suggest a Catalytic Mechanism for the Phosphotransacetylase from Methanosarcina thermophila

H. Schindelin, J. Ferry, Sarah H. Lawrence, 2006, Journal of bacteriology.

Anaerobic degradation of benzoate to methane by a microbial consortium

J. Ferry, R. Wolfe, 1976, Archives of Microbiology.

Nutritional and biochemical characterization of Methanospirillum hungatii

J. Ferry, R. Wolfe, 1977, Applied and environmental microbiology.

Methanospirillum, a New Genus of Methanogenic Bacteria, and Characterization of Methanospirillum hungatii sp.nov.

J. Ferry, R. Wolfe, Paul H. Smith, 1974 .

Expression, purification, crystallization and preliminary X-ray crystallographic analysis of a novel plant-type ferredoxin/thioredoxin reductase-like protein from Methanosarcina acetivorans.

J. Ferry, N. Yennawar, A. Kumar, 2011, Acta crystallographica. Section F, Structural biology and crystallization communications.

Flavin Mononucleotide-Binding Flavoprotein Family in the Domain Archaea

J. Ferry, Yan-Huai R. Ding, 2004, Journal of bacteriology.

Archaea Flavoprotein Family in the Domain Flavin Mononucleotide-Binding

J. Ferry, Yan-Huai R. Ding, 2003 .

Comparative Genomics of the Genus Methanohalophilus, Including a Newly Isolated Strain From Kebrit Deep in the Red Sea

U. Stingl, J. Blom, J. Ferry, 2019, Front. Microbiol..

Draft Genome Sequence of an Obligately Methylotrophic Methanogen, Methanococcoides methylutens, Isolated from Marine Sediment

U. Stingl, J. Blom, J. Ferry, 2014, Genome Announcements.

Trace methane oxidation studied in several Euryarchaeota under diverse conditions.

J. Ferry, K. Freeman, J. Moran, 2005, Archaea.

Formate dehydrogenase from Methanobacterium formicicum. Electron paramagnetic resonance spectroscopy of the molybdenum and iron-sulfur centers.

J. Ferry, H. May, M. Barber, 1983, The Journal of biological chemistry.

Trace metal and vitamin requirements of Methanococcoides methylutens grown with trimethylamine

K. Sowers, J. Ferry, 1985, Archives of Microbiology.

Initial steps in the anaerobic degradation of 3,4,5-trihydroxybenzoate by Eubacterium oxidoreducens: characterization of mutants and role of 1,2,3,5-tetrahydroxybenzene

J. Ferry, J. Haddock, 1993, Journal of bacteriology.

Effect of molybdenum and tungsten on synthesis and composition of formate dehydrogenase in Methanobacterium formicicum

J. Ferry, H. May, P. S. Patel, 1988, Journal of bacteriology.

Effect ofMonensin on GrowthandMethanogenesis of Methanobacterium formicicum

J. Ferry, C. A. Dellinger, 1984 .

Effect of Monensin on Growth and Methanogenesis of Methanobacterium formicicum

J. Ferry, C. A. Dellinger, 1984, Applied and environmental microbiology.

Life on the thermodynamic edge: Respiratory growth of an acetotrophic methanogen

J. Ferry, D. Prakash, Shikha S. Chauhan, 2019, Science Advances.

Cloning, Nucleotide Sequence, andTranscriptional Analyses oftheGeneEncoding aFerredoxin from Methanosarcina thermophila

J. Ferry, A. P. Clements, 1992 .

Purification and properties of the membrane-associated coenzyme F420-reducing hydrogenase from Methanobacterium formicicum

S. F. Baron, J. Ferry, 1989, Journal of bacteriology.

Characterization of the upstream region of the formate dehydrogenase operon of Methanobacterium formicicum

J. Ferry, P. S. Patel, P. Patel, 1988, Journal of bacteriology.

Identification of methyl coenzyme M as an intermediate in methanogenesis from acetate in Methanosarcina spp

D. Lovley, J. Ferry, R. White, 1984, Journal of bacteriology.

Phylogenetic Relationships Among the Methylotrophic Methane-Producing Bacteria and Emendation of the Family Methanosarcinaceae

John L. Johnson, K. Sowers, J. Ferry, 1984 .

Transcriptional regulation of the phosphotransacetylase-encoding and acetate kinase-encoding genes (pta and ack) from Methanosarcina thermophila

J. Ferry, K. Singh-Wissmann, 1995, Journal of bacteriology.

Isolation of an enzyme complex with carbon monoxide dehydrogenase activity containing corrinoid and nickel from acetate-grown Methanosarcina thermophila

J. Ferry, K. C. Terlesky, M. J. Nelson, 1986, Journal of bacteriology.

Protein content and enzyme activities in methanol- and acetate-grown Methanosarcina thermophila

T. Bobik, P. Jablonski, J. Ferry, 1990, Journal of bacteriology.

Proteome of Methanosarcina acetivorans Part I: an expanded view of the biology of the cell.

Qingbo Li, T. Rejtar, B. Karger, 2005, Journal of proteome research.

The Biochemistry and Physiology of Respiratory-Driven Reversed Methanogenesis

C. Maranas, J. Ferry, Hadi Nazem-Bokaee, 2018 .

Enzymology of one-carbon metabolism in methanogenic pathways.

J. Ferry, 1999, FEMS microbiology reviews.

Formate dehydrogenase.

J. Ferry, 1990, FEMS microbiology reviews.

Purification and characterization of acetate kinase from acetate-grown Methanosarcina thermophila. Evidence for regulation of synthesis.

J. Ferry, D. Aceti, 1988, The Journal of biological chemistry.

Structural and Biochemical Characterization of a Ferredoxin:Thioredoxin Reductase-like Enzyme from Methanosarcina acetivorans.

J. Ferry, N. Yennawar, A. Kumar, 2015, Biochemistry.

MreA Functions in the Global Regulation of Methanogenic Pathways in Methanosarcina acetivorans

K. Murakami, J. Ferry, V. Vepachedu, 2012, mBio.

Electron transport in acetate-grown Methanosarcina acetivorans

J. Tomb, J. Ferry, Mingyu Wang, 2011, BMC Microbiology.

Biochemistry of Acetotrophic Methanogenesis

J. Ferry, 2010 .

Characterization of CamH from Methanosarcina thermophila, Founding Member of a Subclass of the γ Class of Carbonic Anhydrases

J. Tomb, J. Ferry, S. Zimmerman, 2009, Journal of bacteriology.

Genomic and proteomic analyses reveal multiple homologs of genes encoding enzymes of the methanol:coenzyme M methyltransferase system that are differentially expressed in methanol- and acetate-grown Methanosarcina thermophila.

J. Tomb, J. Ferry, Shiping Zhang, 2002, FEMS microbiology letters.

Structural and Biochemical Characterizations of Methanoredoxin from Methanosarcina acetivorans, a Glutaredoxin-Like Enzyme with Coenzyme M-Dependent Protein Disulfide Reductase Activity.

J. Ferry, N. Yennawar, A. Kumar, 2016, Biochemistry.

Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass.

J. Ferry, 2011, Current opinion in biotechnology.

The archetype gamma-class carbonic anhydrase (Cam) contains iron when synthesized in vivo.

K. Sowers, J. Ferry, S. Macauley, 2009, Biochemistry.

Electron Bifurcation and Confurcation in Methanogenesis and Reverse Methanogenesis

J. Ferry, Zhen Yan, 2018, Front. Microbiol..

Biochemical Characterization of the 20S Proteasome from the Methanoarchaeon Methanosarcina thermophila

H. Aldrich, J. Ferry, J. Maupin-Furlow, 1998 .

The chemical biology of methanogenesis

J. Ferry, 2010 .

Synthesis of acetyl coenzyme A by carbon monoxide dehydrogenase complex from acetate-grown Methanosarcina thermophila

J. Ferry, D. Abbanat, 1990, Journal of bacteriology.

EPR properties of the Ni-Fe-C center in an enzyme complex with carbon monoxide dehydrogenase activity from acetate-grown Methanosarcina thermophila. Evidence that acetyl-CoA is a physiological substrate.

J. Ferry, D. Aceti, K. C. Terlesky, 1987, The Journal of biological chemistry.

Purification and properties of methyl coenzyme M methylreductase from acetate-grown Methanosarcina thermophila

P. Jablonski, J. Ferry, 1991, Journal of bacteriology.

Demonstration of carbon-carbon bond cleavage of acetyl coenzyme A by using isotopic exchange catalyzed by the CO dehydrogenase complex from acetate-grown Methanosarcina thermophila

J. W. Peters, C. Walsh, J. Ferry, 1991, Journal of bacteriology.

Mechanistic studies of the coenzyme F420 reducing formate dehydrogenase from Methanobacterium formicicum.

C. Walsh, J. Ferry, W. Orme-Johnson, 1986, Biochemistry.

Site-Specific Mutational Analysis of a Novel Cysteine Motif Proposed To Ligate the 4Fe-4S Cluster in the Iron-Sulfur Flavoprotein of the Thermophilic MethanoarchaeonMethanosarcina thermophila

J. Ferry, U. Leartsakulpanich, M. L. Antonkine, 2000, Journal of bacteriology.

Analysis of the CO dehydrogenase/acetyl-coenzyme A synthase operon of Methanosarcina thermophila

J. Ferry, J. Maupin-Furlow, 1996, Journal of bacteriology.

Acetate kinase and phosphotransacetylase.

J. Ferry, 2011, Methods in enzymology.

Acetate Kinase From Methanosarcina thermophila , a Key Enzyme for Methanogenesis

J. Ferry, P. Iyer, 2005 .

The Role of Histidines in the Acetate Kinase fromMethanosarcina thermophila *

R. Barber, C. Ingram-Smith, J. Ferry, 2000, The Journal of Biological Chemistry.

A Proteasome from the Methanogenic Archaeon Methanosarcina thermophila(*)

J. Ferry, J. Maupin-Furlow, 1995, The Journal of Biological Chemistry.

Identification of Essential Glutamates in the Acetate Kinase from Methanosarcina thermophila

C. Ingram-Smith, J. Ferry, K. Singh-Wissmann, 1998, Journal of bacteriology.

Evidence for a Transition State Analog, MgADP-Aluminum Fluoride-Acetate, in Acetate Kinase from Methanosarcina thermophila *

J. Ferry, A. Gorrell, R. D. Miles, 2002, The Journal of Biological Chemistry.

Biochemistry and Physiology of the β Class Carbonic Anhydrase (Cpb) from Clostridium perfringens Strain 13

J. Ferry, S. Melville, A. Patterson, 2013, Journal of bacteriology.

Carbonic anhydrase activators: activation of the archaeal beta-class (Cab) and gamma-class (Cam) carbonic anhydrases with amino acids and amines.

C. Supuran, A. Scozzafava, A. Innocenti, 2008, Bioorganic & medicinal chemistry letters.

Carbonic anhydrase inhibitors. Inhibition of the beta-class enzyme from the methanoarchaeon Methanobacterium thermoautotrophicum (Cab) with anions.

C. Supuran, A. Scozzafava, A. Innocenti, 2004, Bioorganic & medicinal chemistry letters.

Carbonic anhydrase inhibitors. Inhibition of the zinc and cobalt gamma-class enzyme from the archaeon Methanosarcina thermophila with anions.

C. Supuran, A. Scozzafava, A. Innocenti, 2004, Bioorganic & medicinal chemistry letters.

Gut Microbes Contribute to Nitrogen Provisioning in a Wood-Feeding Cerambycid

J. Ferry, G. Felton, K. Hoover, 2014, Environmental entomology.

Composition of the coenzyme F420-dependent formate dehydrogenase from Methanobacterium formicicum

J. Ferry, N. Schauer, Neil L. SCHAUERt, 1986, Journal of bacteriology.

Inactivation of formate dehydrogenase from Methanobacterium formicicum by cyanide

J. Ferry, H. May, M. Barber, 1986 .

Molybdopterin cofactor from Methanobacterium formicicum formate dehydrogenase

J. Ferry, H. May, N. Schauer, 1986, Journal of bacteriology.

Enzymology of the fermentation of acetate to methane by Methanosarcina thermophila

J. Ferry, 1997, BioFactors.

Electrochemical and Spectroscopic Properties of the Iron-Sulfur Flavoprotein from Methanosarcina thermophila *

S. Ragsdale, J. Ferry, U. Leartsakulpanich, 1998, The Journal of Biological Chemistry.

Biochemistry and Physiology of the β Class Carbonic Anhydrase

J. Ferry, S. Melville, A. Patterson, 2013 .

Characterization of an Iron-Sulfur Flavoprotein from Methanosarcina thermophila *

J. Ferry, M. Latimer, Michael H. Painter, 1996, The Journal of Biological Chemistry.

Role of Arginine 59 in the γ-Class Carbonic Anhydrases†

J. Ferry, C. Tu, B. Tripp, 2002 .

A structure-function study of a proton transport pathway in the gamma-class carbonic anhydrase from Methanosarcina thermophila.

J. Ferry, B. Tripp, 2000, Biochemistry.

Prokaryotic carbonic anhydrases.

Kerry S. Smith, J. Ferry, K. Smith, 2000, FEMS microbiology reviews.

Methane oxidation by anaerobic archaea for conversion to liquid fuels

Costas D. Maranas, Thomas K. Wood, Saratram Gopalakrishnan, 2015, Journal of Industrial Microbiology & Biotechnology.

Reversing methanogenesis to capture methane for liquid biofuel precursors

Howard M. Salis, Limin Zhang, Michael J. McAnulty, 2016, Microbial Cell Factories.

Ferredoxin requirement for electron transport from the carbon monoxide dehydrogenase complex to a membrane-bound hydrogenase in acetate-grown Methanosarcina thermophila.

J. Ferry, K. C. Terlesky, 1988, The Journal of biological chemistry.

Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans

Costas D. Maranas, Thomas K. Wood, Saratram Gopalakrishnan, 2016, Microbial Cell Factories.

CO dehydrogenase.

J. Ferry, 1995, Annual review of microbiology.

Interaction of iron-sulfur flavoprotein with oxygen and hydrogen peroxide.

J. Ferry, F. Cruz, 2006, Biochimica et biophysica acta.

Carbonic anhydrase is an ancient enzyme widespread in prokaryotes.

T. Whittam, Kerry S. Smith, J. Ferry, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Structural and Kinetic Characterization of an Archaeal β-Class Carbonic Anhydrase

Kerry S. Smith, J. Ferry, N. Cosper, 2000, Journal of bacteriology.

Biochemistry and Physiology of Anaerobic Bacteria

L. Barton, M. Adams, J. Ferry, 2003, Springer New York.

Identification of molybdopterin guanine dinucleotide in formate dehydrogenase from Methanobacterium formicicum.

J. Ferry, K. Rajagopalan, J. Johnson, 1991, FEMS microbiology letters.

Crystal Structure of the “cab”-type β Class Carbonic Anhydrase from the Archaeon Methanobacterium thermoautotrophicum *

D. Rees, Kerry S. Smith, J. Ferry, 2001, The Journal of Biological Chemistry.

Formate Dehydrogenase: Microbiology, Biochemistry and Genetics

J. Ferry, 1990 .

Biochemistry of methanogenesis.

J. Ferry, 1992, Critical reviews in biochemistry and molecular biology.

How to make a living by exhaling methane.

J. Ferry, James G Ferry, 2010, Annual review of microbiology.

One-Carbon Metabolism in Methanogenic Anaerobes

J. Ferry, 2003 .

Identification of formate dehydrogenase-specific mRNA species and nucleotide sequence of the fdhC gene of Methanobacterium formicicum

J. Ferry, W. White, 1992, Journal of bacteriology.

Metabolism of Formate in Methanobacterium formicicum

J. Ferry, N. Schauer, 1980, Journal of bacteriology.

Cloning, expression, and nucleotide sequence of the formate dehydrogenase genes from Methanobacterium formicicum.

J. Ferry, H. May, A. Shuber, 1986, The Journal of biological chemistry.

Methanogenesis : Ecology, Physiology, Biochemistry and Genetics

James G. Ferry, J. Ferry, 1994 .

Carbonic Anhydrases of Environmentally and Medically Relevant Anaerobic Prokaryotes

J. Ferry, 2015 .

Carbonic anhydrases of anaerobic microbes.

J. Ferry, 2013, Bioorganic & medicinal chemistry.

Role of bacterial siderophores in dissolution of hornblende

J. Ferry, S. Brantley, L. Liermann, 2000 .

Prokaryotic carbonic anhydrases.

J. Ferry, K. Smith, 2000, FEMS microbiology reviews.

Rapidly growing rumen methanogenic organism that synthesizes coenzyme M and has a high affinity for formate

D. Lovley, J. Ferry, D R Lovley, 1984, Applied and environmental microbiology.

Digesta flows in sheep fed poor-quality hay supplemented with urea and carbohydrates.

J. P. Fontenot, J. Ferry, I. Ortigues, 1988, Journal of animal science.

FAD requirement for the reduction of coenzyme F420 by hydrogenase from Methanobacterium formicicum.

J. Ferry, D. Brown, M. J. Nelson, 1984, Biochemical and biophysical research communications.

FAD requirement for the reduction of coenzyme F420 by formate dehydrogenase from Methanobacterium formicicum

J. Ferry, N. Schauer, 1983, Journal of bacteriology.

Phylum All. Euryarchaeota phy. nov.

R. Huber, W. Whitman, G. Garrity, 2001 .

Cysteine biosynthesis in the Archaea: Methanosarcina thermophila utilizes O-acetylserine sulfhydrylase.

J. Ferry, B. Borup, 2000, FEMS microbiology letters.

An unconventional pathway for reduction of CO2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics

Qingbo Li, T. Rejtar, B. Karger, 2006, Proceedings of the National Academy of Sciences.

Characterization of the cdhD and cdhE genes encoding subunits of the corrinoid/iron-sulfur enzyme of the CO dehydrogenase complex from Methanosarcina thermophila

J. Ferry, J. Maupin-Furlow, 1996, Journal of bacteriology.

Immunogold localization of coenzyme F420-reducing formate dehydrogenase and coenzyme F420-reducing hydrogenase in Methanobacterium formicicum

S. F. Baron, D. S. Williams, H. Aldrich, 1989, Archives of Microbiology.

Locations of the hydrogenases of Methanobacterium formicicum after subcellular fractionation of cell extract

S. F. Baron, J. Ferry, D. Brown, 1987, Journal of bacteriology.

Properties of Formate Dehydrogenase in Methanobacterium formicicum

J. Ferry, N. Schauer, 1982, Journal of bacteriology.

Reductive dechlorination of trichloroethylene by the CO-reduced CO dehydrogenase enzyme complex from Methanosarcina thermophila.

P. Jablonski, J. Ferry, Peter E. Jablonski, 1992, FEMS microbiology letters.

Composition oftheCoenzyme F420-Dependent Formate Dehydrogenase fromMethanobacterium formicicum

J. Ferry, 1986 .

Fermentation of Acetate

J. Ferry, 1993 .

A biochemical framework for anaerobic oxidation of methane driven by Fe(III)-dependent respiration

J. Ferry, C. Gorski, Zhen Yan, 2018, Nature Communications.

A Ferredoxin- and F420H2-Dependent, Electron-Bifurcating, Heterodisulfide Reductase with Homologs in the Domains Bacteria and Archaea

J. Ferry, Zhen Yan, Mingyu Wang, 2017, mBio.

Crystal Structure of the NADH:Quinone Oxidoreductase WrbA from Escherichia coli

J. Ferry, S. Andrade, O. Einsle, 2007, Journal of bacteriology.

Characterization of the iron-sulfur clusters in ferredoxin from acetate-grown Methanosarcina thermophila

S. Ragsdale, J. Ferry, L. Kilpatrick, 1994, Journal of bacteriology.

Methane from acetate

J. Ferry, J G Ferry, 1992, Journal of bacteriology.

Purification and properties of phloroglucinol reductase from Eubacterium oxidoreducens G-41.

J. Ferry, J. Haddock, 1989, The Journal of biological chemistry.

Carbonic anhydrase inhibitors. Inhibition of the prokariotic beta and gamma-class enzymes from Archaea with sulfonamides.

C. Supuran, A. Casini, A. Scozzafava, 2004, Bioorganic & medicinal chemistry letters.

Electron and Proton Flux for Carbon Dioxide Reduction in Methanosarcina barkeri During Direct Interspecies Electron Transfer

D. Lovley, D. Holmes, J. Ferry, 2018, Front. Microbiol..

Structure and function of an unusual flavodoxin from the domain Archaea

K. Murakami, J. Ferry, M. G. Santiago-Martínez, 2019, Proceedings of the National Academy of Sciences.

Functional Role of MrpA in the MrpABCDEFG Na+/H+ Antiporter Complex from the Archaeon Methanosarcina acetivorans

J. Ferry, J. Rodríguez-Zavala, R. Jasso‐Chávez, 2016, Journal of bacteriology.

Acetate Metabolism in Anaerobes from the Domain Archaea

J. Ferry, 2015, Life.

MrpA Functions in Energy Conversion during Acetate-Dependent Growth of Methanosarcina acetivorans

K. Sowers, J. Ferry, E. Apolinario, 2013, Journal of bacteriology.

Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans

Vinay Satish Kumar, Costas D. Maranas, James G. Ferry, 2011, BMC Systems Biology.

An Engineered Methanogenic Pathway Derived from the Domains Bacteria and Archaea

J. Ferry, D. Lessner, Lexan Lhu, 2010, mBio.

Functional Analysis of the Three TATA Binding Protein Homologs in Methanosarcina acetivorans

K. Murakami, J. Ferry, M. Reichlen, 2010, Journal of bacteriology.

CO in methanogenesis

James G. Ferry, J. Ferry, 2010, Annals of Microbiology.

Methanolobus zinderi sp. nov., a methylotrophic methanogen isolated from a deep subsurface coal seam.

J. Ferry, Sebastian N. Doerfert, M. Reichlen, 2009, International journal of systematic and evolutionary microbiology.

Acetate-based methane production.

J. Ferry, 2008 .

The Archaeon Methanosarcina acetivorans Contains a Protein Disulfide Reductase with an Iron-Sulfur Cluster

J. Ferry, D. Lessner, 2007, Journal of bacteriology.

Proteome of Methanosarcina acetivorans Part II: comparison of protein levels in acetate- and methanol-grown cells.

Qingbo Li, T. Rejtar, B. Karger, 2005, Journal of proteome research.

Growth of acetotrophic, methane-producing bacteria in a pH auxostat

K. Sowers, J. Ferry, M. J. Nelson, 1984, Current Microbiology.

CO Dehydrogenase of Methanogens

J. Ferry, 1994 .

Carbon monoxide-dependent methyl coenzyme M methylreductase in acetotrophic Methosarcina spp

J. Ferry, M J Nelson, J G Ferry, 1984, Journal of bacteriology.

Characterization of the RnfB and RnfG Subunits of the Rnf Complex from the Archaeon Methanosarcina acetivorans

S. de Vries, J. Ferry, S. Suharti, 2014, PloS one.

Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol.

L. Rohlin, K. Salmon, R. Gunsalus, 2007, Journal of proteome research.

Characterization of a CO: heterodisulfide oxidoreductase system from acetate-grown Methanosarcina thermophila

M. Rasche, J. Ferry, C. Peer, 1994, Journal of bacteriology.

Methanogens and the Archaebacteria, Molecular Biology of

M. Rasche, J. Ferry, 2006 .

Isolation and Characterization of a Methylotrophic Marine Methanogen, Methanococcoides methylutens gen. nov., sp. nov

K. Sowers, J. Ferry, 1983, Applied and environmental microbiology.

New algorithm for 15N/14N quantitation with LC-ESI-MS using an LTQ-FT mass spectrometer.

Qingbo Li, T. Rejtar, B. Karger, 2006, Journal of proteome research.

Activation of acetate by Methanosarcina thermophila. Purification and characterization of phosphotransacetylase.

J. Ferry, L. L. Lundie, 1989, The Journal of biological chemistry.

Identification of essential arginines in the acetate kinase from Methanosarcina thermophila.

J. Ferry, K. Singh-Wissmann, R. D. Miles, 2000, Biochemistry.

Inhibition of the archaeal beta-class (Cab) and gamma-class (Cam) carbonic anhydrases.

C. Supuran, J. Ferry, S. Zimmerman, 2007, Current Topics in Medicinal Chemistry.

Investigation of the Methanosarcina thermophila acetate kinase mechanism by fluorescence quenching.

J. Ferry, A. Gorrell, 2007, Biochemistry.

Characterization of the Acetate Binding Pocket in the Methanosarcina thermophila Acetate Kinase

Kerry S. Smith, J. Ferry, Sarah H. Lawrence, 2005, Journal of bacteriology.

Structural and Kinetic Analyses of Arginine Residues in the Active Site of the Acetate Kinase from Methanosarcina thermophila*

J. Ferry, Sarah H. Lawrence, A. Gorrell, 2005, Journal of Biological Chemistry.

Site-directed Mutational Analysis of Active Site Residues in the Acetate Kinase from Methanosarcina thermophila *

J. Ferry, P. Iyer, R. D. Miles, 2001, The Journal of Biological Chemistry.

The gamma class of carbonic anhydrases.

J. Ferry, 2010, Biochimica et biophysica acta.

A Role for Iron in an Ancient Carbonic Anhydrase*

Caleb B. Bell, Carsten Krebs, James G. Ferry, 2004, Journal of Biological Chemistry.

Carbonic Anhydrase: New Insights for an Ancient Enzyme* 210

Kerry S. Smith, J. Ferry, J G Ferry, 2001, The Journal of Biological Chemistry.

Inhibition of the Archaeal -Class (Cab) and ?-Class (Cam) Carbonic Anhydrases

C. Supuran, J. Ferry, S. Zimmerman, 2007 .

Sulphonamide inhibition studies of the β-carbonic anhydrase from the bacterial pathogen Clostridium perfringens

C. Supuran, A. Scozzafava, D. Vullo, 2017, Journal of enzyme inhibition and medicinal chemistry.

A left‐hand beta‐helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila.

H. Schindelin, C. Kisker, J. Ferry, 1996, The EMBO journal.

Bicarbonate as a proton donor in catalysis by Zn(II)- and Co(II)-containing carbonic anhydrases.

D. Silverman, J. Ferry, C. Tu, 2001, Journal of the American Chemical Society.

Essential Amino Acid Supplementation by Gut Microbes of a Wood-Feeding Cerambycid

T. Larsen, J. Ferry, G. Felton, 2015, Environmental Entomology.

Cloning, sequence analysis, and hyperexpression of the genes encoding phosphotransacetylase and acetate kinase from Methanosarcina thermophila

J. Ferry, M. Latimer, 1993, Journal of bacteriology.

Gamma carbonic anhydrases in plant mitochondria

A. Brennicke, J. Echave, M. Fornasari, 2004, Plant Molecular Biology.

Conversion of Kepone by Methanosarcina thermophila

P. Jablonski, J. Ferry, D. J. Pheasant, 1996 .

Kinetics of Formate Metabolism in Methanobacterium formicicum and Methanospirillum hungatei

James G. Ferry, J. Ferry, Neil L. Schauer, 1982, Applied and environmental microbiology.

Kinetic and spectroscopic characterization of the gamma-carbonic anhydrase from the methanoarchaeon Methanosarcina thermophila.

C. Colangelo, C. Fierke, D. Silverman, 1999, Biochemistry.

Role of Trp19 and Tyr200 in catalysis by the γ-class carbonic anhydrase from Methanosarcina thermophila.

D. Silverman, R. McKenna, J. Ferry, 2013, Archives of biochemistry and biophysics.

Roles of the Conserved Aspartate and Arginine in the Catalytic Mechanism of an Archaeal β-Class Carbonic Anhydrase

Kerry S. Smith, J. Ferry, C. Ingram‐Smith, 2002, Journal of bacteriology.

A Plant-Type (β-Class) Carbonic Anhydrase in the Thermophilic Methanoarchaeon Methanobacterium thermoautotrophicum

James G. Ferry, Kerry S. Smith, J. Ferry, 1999, Journal of bacteriology.

Characterization of the metal centers of the Ni/Fe-S component of the carbon-monoxide dehydrogenase enzyme complex from Methanosarcina thermophila.

M. Rasche, S. Ragsdale, P. Jablonski, 1994, The Journal of biological chemistry.

The effect of methanogen growth on mineral substrates: will Ni markers of methanogen‐based communities be detectable in the rock record?

J. Ferry, S. Brantley, E. Hausrath, 2007, Geobiology.

Cloning, nucleotide sequence, and transcriptional analyses of the gene encoding a ferredoxin from Methanosarcina thermophila

J. Ferry, A. P. Clements, 1992, Journal of bacteriology.

Isolation and characterization of "Methanosphaera cuniculi" sp. nov

J. Ferry, B. Biavati, M. Vasta, 1988, Applied and environmental microbiology.

Crystal structure of phosphotransacetylase from the methanogenic archaeon Methanosarcina thermophila.

H. Schindelin, J. Ferry, K. Rajashankar, 2004, Structure.

Crystallization of acetate kinase from Methanosarcina thermophila and prediction of its fold

M. Hasson, J. Ferry, K. Buss, 1997, Protein science : a publication of the Protein Society.

A Ferredoxin Disulfide Reductase Delivers Electrons to the Methanosarcina barkeri Class III Ribonucleotide Reductase

S. Elliott, J. Ferry, J. Stubbe, 2015, Biochemistry.

In vivo structure probing of RNA in Archaea: novel insights into the ribosome structure of Methanosarcina acetivorans

R. Gutell, P. Bevilacqua, J. Ferry, 2023, bioRxiv.

Methanogenesis in the Marine Environment

K. Sowers, J. Ferry, 2003 .

Toward a mechanistic and physiological understanding of a ferredoxin:disulfide reductase from the domains Archaea and Bacteria

C. Krebs, J. Ferry, A. Kumar, 2018, The Journal of Biological Chemistry.

Single‐cell genomics reveals pyrrolysine‐encoding potential in members of uncultivated archaeal candidate division MSBL1

U. Stingl, M. Haroon, J. Ferry, 2017, Environmental microbiology reports.

Reconstitution and properties of a coenzyme F420-mediated formate hydrogenlyase system in Methanobacterium formicicum

S. F. Baron, J. Ferry, 1989, Journal of bacteriology.

A closer look at the active site of gamma-class carbonic anhydrases: high-resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila.

D. Rees, C. Kisker, J. Ferry, 1999, Biochemistry.

Characterization of heterologously produced carbonic anhydrase from Methanosarcina thermophila

J. Ferry, B. Alber, Birgit E. Alber, 1996, Journal of bacteriology.

Proposal for a hydrogen bond network in the active site of the prototypic gamma-class carbonic anhydrase.

J. Ferry, S. Zimmerman, 2006, Biochemistry.

A carbonic anhydrase from the archaeon Methanosarcina thermophila.

J. Ferry, B. Alber, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Characterization of the metal centers of the corrinoid/iron-sulfur component of the CO dehydrogenase enzyme complex from Methanosarcina thermophila by EPR spectroscopy and spectroelectrochemistry.

S. Ragsdale, P. Jablonski, J. Ferry, 1993, The Journal of biological chemistry.

Resolution of component proteins in an enzyme complex from Methanosarcina thermophila catalyzing the synthesis or cleavage of acetyl-CoA.

J. Ferry, D. Abbanat, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Purification and characterization of a ferredoxin from acetate-grown Methanosarcina thermophila.

J. Ferry, K. C. Terlesky, 1988, The Journal of biological chemistry.

Chemical Rescue of Proton Transfer in Catalysis by Carbonic Anhydrases in the β- and γ-Class†

D. Silverman, J. Ferry, C. Tu, 2002 .

Proposed minimal standards for description of methanogenic archaea.

W. Whitman, Y. Kamagata, J. Ferry, 2023, International journal of systematic and evolutionary microbiology.

Iron-Sulfur Flavoprotein (Isf) fromMethanosarcina thermophila Is the Prototype of a Widely Distributed Family

J. Ferry, F. Cruz, T. Zhao, 2001, Journal of bacteriology.

Methanogenic Conversion of CO2 Into CH4

J. Ferry, S. Stevens, M. Schoell, 2012 .

NOTES: Methanosarcina thermophila sp. nov., a Thermophilic, Acetotrophic, Methane-Producing Bacterium

S. Zinder, K. Sowers, J. Ferry, 1985 .

O-Acetylserine Sulfhydrylase fromMethanosarcina thermophila

J. Ferry, B. Borup, 2000, Journal of bacteriology.

Biochemical Characterization of the 20S Proteasome from the Methanoarchaeon Methanosarcina thermophila

H. Aldrich, J. Ferry, J. Maupin-Furlow, 1998, Journal of bacteriology.

Structural characterization and physiological function of component B from Methanosarcina thermophila

Robert H. White, J. Ferry, A. P. Clements, 1993, Archives of Microbiology.

Carbonic Anhydrase: New Insights for an Ancient Enzyme* 210

Kerry S. Smith, J. Ferry, B. Tripp, 2001, The Journal of Biological Chemistry.

Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation.

C. Peden, C. Kerfeld, R. Thauer, 2013, Chemical reviews.

Methanogenesis

S. Zinder, G. Gottschalk, J. Reeve, 1993, Chapman & Hall Microbiology Series.

How to make a living by exhaling methane.

J. Ferry, 2010, Annual review of microbiology.

Recent Developments on the Biochemistry of Methanogenesis from Acetate

J. Ferry, K. C. Terlesky, M. J. Nelson, 1987 .

MrpA Functions in Energy Conversion during Acetate-Dependent Growth of Methanosarcina acetivorans

K. Sowers, J. Ferry, E. Apolinario, 2013, Journal of bacteriology.

Reconstitution andProperties ofa CoenzymeF420-Mediated Formate Hydrogenlyase SysteminMethanobacterium formicicum

S. F. Baron, J. Ferry, 1989 .

Steady-State Kinetic Analysis of Phosphotransacetylase from Methanosarcina thermophila

J. Ferry, Sarah H. Lawrence, 2006, Journal of bacteriology.

Methanosarcina thermophila Phosphotransacetylase from Steady-State Kinetic Analysis of

J. Ferry, Sarah H. Lawrence, 2006 .

Methane: Small Molecule, Big Impact

J. Ferry, 1997, Science.

Role of Arginines in Coenzyme A Binding and Catalysis by the Phosphotransacetylase from Methanosarcina thermophila

J. Ferry, P. Iyer, 2001, Journal of bacteriology.