Y. Matsuura

发表

Role of charged residues in stabilization of Pyrococcus horikoshii CutA1, which has a denaturation temperature of nearly 150 °C

N. Kunishima, Hitoshi Yamamoto, E. Katoh, 2012, The FEBS journal.

Confirmation of the formation of salt bridges in the denatured state of CutA1 protein using molecular dynamics simulations

Y. Joti, K. Yutani, Y. Matsuura, 2019, Biophysics and physicobiology.

High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center

N. Kunishima, Hitoshi Yamamoto, Masaki Yamamoto, 2008, Journal of Structural and Functional Genomics.

Crystallization and preliminary X-ray crystallographic studies of the biotin carboxyl carrier protein and biotin protein ligase complex from Pyrococcus horikoshii OT3.

N. Kunishima, B. Bagautdinov, Y. Matsuura, 2007, Acta crystallographica. Section F, Structural biology and crystallization communications.

Integrated database of information from structural genomics experiments.

T. Ishikawa, H. Naitow, N. Kunishima, 2013, Acta crystallographica. Section D, Biological crystallography.

Protein–ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation

H. Naitow, N. Kunishima, T. Hatsui, 2017, Acta crystallographica. Section D, Structural biology.

The dietary effects of a fermented vegetable product on glutathione peroxidase activity and lipid peroxidation of Japanese flounder Paralichthys olivaceus

Y. Matsuura, E. Okimasu, T. Ashida, 2006, Fisheries Science.

Effect of a dietary fermented vegetable product on the heat shock response of Japanese flounder Paralichthys olivaceus

Y. Matsuura, E. Okimasu, T. Ashida, 2009, Fisheries Science.

Availability of NHS-biotin labeling to identify free protein lysine revealed by experiment and MD simulation.

H. Naitow, N. Kunishima, M. Ihara, 2018, Analytical biochemistry.

Capturing structural changes of photosystem II using time-resolved serial femtosecond crystallography with proper flash excitations

H. Naitow, Y. Joti, K. Tono, 2020 .

A new cryo-EM system for single particle analysis.

T. Ishikawa, H. Naitow, K. Yonekura, 2019, Journal of structural biology.

Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL

Takashi Kameshima, Tetsuya Ishikawa, Takanori Nakane, 2017, Nature.

Further thermo‐stabilization of thermophilic rhodopsin from Thermus thermophilus JL‐18 through engineering in extramembrane regions

H. Naitow, N. Kunishima, Y. Matsuura, 2020, Proteins.

Thermodynamic analysis of unusually thermostable CutA1 protein from human brain and its protease susceptibility.

N. Kunishima, Hitoshi Yamamoto, E. Katoh, 2015, Journal of biochemistry.

Structural and functional characterization of thermostable biocatalysts for the synthesis of 6-aminopurine nucleoside-5'-monophospate analogues.

H. Naitow, N. Kunishima, Y. Matsuura, 2019, Bioresource technology.

Efficacy of dietary fermented vegetable product on immune response, up-regulation of immune-related genes and protection of kuruma shrimp (Marsupenaeus japonicus) against Vibrio parahaemolyticus

G. Elshopakey, Y. Matsuura, R. Sudhakaran, 2018, Aquaculture.

Chr4, a Schizosaccharomyces pombe homologue of the Saccharomyces cerevisiae Chs4p/Skt5p protein, is related to septum formation and is required for the proper localization of Chs2

Y. Matsuura, Katsunori Tanaka, M. Kawamukai, 2004, Yeast.

Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design.

M. Ota, N. Kunishima, B. Bagautdinov, 2010, Journal of biochemistry.

Protein Biotinylation Visualized by a Complex Structure of Biotin Protein Ligase with a Substrate*

N. Kunishima, B. Bagautdinov, Y. Matsuura, 2008, Journal of Biological Chemistry.

Structure of putative CutA1 from Homo sapiens determined at 2.05 A resolution.

N. Kunishima, B. Bagautdinov, K. Yutani, 2008, Acta crystallographica. Section F, Structural biology and crystallization communications.

Thermodynamics of protein denaturation at temperatures over 100 °C: CutA1 mutant proteins substituted with hydrophobic and charged residues

N. Kunishima, Y. Joti, K. Yutani, 2015, Scientific Reports.

Capturing structural changes of the S1 to S2 transition of photosystem II using time-resolved serial femtosecond crystallography

H. Naitow, Y. Joti, K. Tono, 2021, IUCrJ.

Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers

O. Nureki, H. Naitow, K. Tono, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Unidirectional ion transport mechanism of a light-driven chloride pump revealed using X-ray free electron lasers

O. Nureki, H. Naitow, K. Tono, 2021, bioRxiv.

Intake of a fermented plant product attenuates allergic symptoms without changing systemic immune responses in a mouse model of Japanese cedar pollinosis

Y. Matsuura, Ayane Hori, T. Fujimura, 2018, The World Allergy Organization journal.

Multiple binding modes of a small molecule to human Keap1 revealed by X-ray crystallography and molecular dynamics simulation

H. Naitow, N. Kunishima, Y. Matsuura, 2015, FEBS open bio.

Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids

Kazunori D. Yamada, H. Naitow, N. Kunishima, 2017, Acta crystallographica. Section D, Structural biology.

Ion–ion interactions in the denatured state contribute to the stabilization of CutA1 proteins

H. Naitow, Y. Joti, K. Yutani, 2018, Scientific reports.

Dimeric core structure of modular stator subunit E of archaeal H+ -ATPase.

N. Kunishima, Y. Matsuura, N. K. Lokanath, 2007, Journal of molecular biology.

Evaluating the strengths of salt bridges in the CutA1 protein using molecular dynamic simulations: a comparison of different force fields

Y. Joti, B. Bagautdinov, K. Yutani, 2019, FEBS open bio.