A. S. Nascimento

发表

Molecular basis of the thermostability and thermophilicity of laminarinases: X-ray structure of the hyperthermostable laminarinase from Rhodothermus marinus and molecular dynamics simulations.

Thiago C. F. Gomes, Rodrigo L. Silveira, L. Martínez, 2011, The journal of physical chemistry. B.

MolShaCS: a free and open source tool for ligand similarity identification based on Gaussian descriptors.

A. S. Nascimento, Luis Antônio C Vaz de Lima, Alessandro S Nascimento, 2013, European journal of medicinal chemistry.

Catalytic mechanism of inulinase from Arthrobacter sp. S37.

Kyoung-Yun Kim, Igor Polikarpov, Su-Il Kim, 2008, Biochemical and biophysical research communications.

Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+

I. Polikarpov, E. Ceccarelli, A. S. Nascimento, 2007, BMC Structural Biology.

Low-resolution envelope, biophysical analysis and biochemical characterization of a short-chain specific and halotolerant carboxylesterase from Bacillus licheniformis.

I. Polikarpov, A. S. Nascimento, M. Kadowaki, 2018, International journal of biological macromolecules.

Structure-Based Virtual Screening and Discovery of New PPARδ/γ Dual Agonist and PPARδ and γ Agonists

A. S. Nascimento, K. M. Honorio, V. Maltarollo, 2015, PloS one.

Energy Landscape of the Domain Movement in Staphylococcus aureus UDP-N-acetylglucosamine 2-epimerase

A. S. Nascimento, Érika Chang de Azevedo, Erika Chang de Azevedo, 2019, bioRxiv.

Energy landscape of the domain movement in Staphylococcus aureus UDP-N-acetylglucosamine 2-epimerase.

A. S. Nascimento, Érika Chang de Azevedo, 2019, Journal of structural biology.

Structural diversity of carbohydrate esterases

I. Polikarpov, A. S. Nascimento, A. M. Nakamura, 2017 .

A Scalable Screening of E. coli Strains for Recombinant Protein Expression

C. Wrenger, A. S. Nascimento, L. R. Manzine, 2022, bioRxiv.

Crystal structure of β1→6‐galactosidase from Bifidobacterium bifidum S17: trimeric architecture, molecular determinants of the enzymatic activity and its inhibition by α‐galactose

I. Polikarpov, A. S. Nascimento, M. Murakami, 2016, The FEBS journal.

Comparative Analysis of Electrostatic Models for Ligand Docking

A. S. Nascimento, G. Sartori, 2019, bioRxiv.

Towards a critical evaluation of an empirical and volume-based solvation function for ligand docking

A. S. Nascimento, Heloisa dos S. Muniz, 2017, PloS one.

Crystallization and preliminary X-ray diffraction analysis of human IL-22 bound to its soluble decoy receptor IL-22BP.

J. Renauld, I. Polikarpov, A. S. Nascimento, 2009, Acta crystallographica. Section F, Structural biology and crystallization communications.

Purification, crystallization and preliminary X-ray diffraction analysis of royal palm tree (Roystonea regia) peroxidase.

V. Shnyrov, I. Polikarpov, A. S. Nascimento, 2007, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray diffraction studies of ferredoxin reductase from Leptospira interrogans.

I. Polikarpov, E. Ceccarelli, A. S. Nascimento, 2006, Acta crystallographica. Section F, Structural biology and crystallization communications.

Ligand Binding Free Energy Evaluation by Monte Carlo Recursion

A. S. Nascimento, J. V. de Souza, Victor H R Nogueira, 2022, bioRxiv.

Structure-based identification of novel PPAR gamma ligands.

I. Polikarpov, A. S. Nascimento, A. Mafud, 2013, Bioorganic & medicinal chemistry letters.

Medium Chain Fatty Acids Are Selective Peroxisome Proliferator Activated Receptor (PPAR) γ Activators and Pan-PPAR Partial Agonists

Leandro Martínez, Tuo Deng, Alessandro S. Nascimento, 2012, PloS one.

GH43 endo-arabinanase from Bacillus licheniformis: Structure, activity and unexpected synergistic effect on cellulose enzymatic hydrolysis.

J. G. Filgueiras, I. Polikarpov, A. S. Nascimento, 2018, International journal of biological macromolecules.

A scalable screening of E. coli strains for recombinant protein expression

C. Wrenger, A. S. Nascimento, L. R. Manzine, 2022, bioRxiv.

Statistical coupling analysis of aspartic proteinases based on crystal structures of the Trichoderma reesei enzyme and its complex with pepstatin A.

A. Wlodawer, A. Gustchina, I. Polikarpov, 2008, Journal of molecular biology.

Tetrazoles as PPARγ ligands: A structural and computational investigation.

A. S. Nascimento, A. Mafud, Jademilson C. Santos, 2021, Journal of molecular graphics & modelling.

Tetrazoles as PPARγ ligands: A Structural and Computational Investigation

A. S. Nascimento, A. Mafud, Jademilson C. Santos, 2021, bioRxiv.

Essential Metabolic Routes as a Way to ESKAPE From Antibiotic Resistance

I. Polikarpov, C. Wrenger, A. S. Nascimento, 2019, bioRxiv.

Insights into the structure and function of fungal β‐mannosidases from glycoside hydrolase family 2 based on multiple crystal structures of the Trichoderma harzianum enzyme

R. Aparício, I. Polikarpov, A. S. Nascimento, 2014, The FEBS journal.

Modulation of beta-amyloid aggregation using ascorbic acid.

V. Zucolotto, A. S. Nascimento, Isabella Sampaio, 2022, Biochimie.

Structure and dynamics of Trichoderma harzianum Cel7B suggest molecular architecture adaptations required for a wide spectrum of activities on plant cell wall polysaccharides.

I. Polikarpov, A. S. Nascimento, M. Kadowaki, 2019, Biochimica et biophysica acta. General subjects.

Structure, computational and biochemical analysis of PcCel45A endoglucanase from Phanerochaete chrysosporium and catalytic mechanisms of GH45 subfamily C members

Rodrigo L. Silveira, Caroline S. Pereira, I. Polikarpov, 2018, Scientific Reports.

Structural requirement for PPARgamma binding revealed by a meta analysis of holo-crystal structures.

A. S. Nascimento, 2010, Biochimie.

An alternative conformation of ERβ bound to estradiol reveals H12 in a stable antagonist position

I. Polikarpov, A. S. Nascimento, M. Skaf, 2017, Scientific Reports.

Identification of a new hormone-binding site on the surface of thyroid hormone receptor.

L. Martínez, R. Aparício, P. Webb, 2014, Molecular endocrinology.

Structural insights into β-glucosidase transglycosylation based on biochemical, structural and computational analysis of two GH1 enzymes from Trichoderma harzianum.

S. R. Marana, I. Polikarpov, A. S. Nascimento, 2018, New biotechnology.

Crystallization and preliminary X-ray diffraction analysis of rat protein tyrosine phosphatase η

A. Fusco, I. Polikarpov, A. S. Nascimento, 2006 .

Structural and biochemical characterization of a GH3 β-glucosidase from the probiotic bacteria Bifidobacterium adolescentis.

S. R. Marana, I. Polikarpov, A. S. Nascimento, 2018, Biochimie.

Structural and biochemical data of Trichoderma harzianum GH1 β-glucosidases

S. R. Marana, I. Polikarpov, A. S. Nascimento, 2017, Data in brief.

The MX2 macromolecular crystallography beamline: a wiggler X-ray source at the LNLS.

M. A. Raulik, I. Polikarpov, A. S. Nascimento, 2009, Journal of synchrotron radiation.

Interleukin-22 forms dimers that are recognized by two interleukin-22R1 receptor chains.

J. Renauld, I. Polikarpov, H. Fischer, 2008, Biophysical journal.

Gaining ligand selectivity in thyroid hormone receptors via entropy

Leandro Martínez, Igor Polikarpov, Phuong Nguyen, 2009, Proceedings of the National Academy of Sciences.

Ligand Binding Free Energy Evaluation by Monte Carlo Recursion

A. S. Nascimento, J. V. de Souza, Victor H R Nogueira, 2023, bioRxiv.

Successes and Pitfalls in Scoring Molecular Interactions

Alessandro S. Nascimento, Heloisa S. Muniz, A. S. Nascimento, 2015, IWBBIO.

Crystal structure and statistical coupling analysis of highly glycosylated peroxidase from royal palm tree (Roystonea regia).

V. Shnyrov, J. Calvete, L. Sanz, 2010, Journal of structural biology.

The β-lactam Ticarcillin is a Staphylococcus aureus UDP-N-acetylglucosamine 2-epimerase binder

A. S. Nascimento, Érika Chang de Azevedo, 2021, bioRxiv.

Structural rearrangements in the thyroid hormone receptor hinge domain and their putative role in the receptor function.

Lucas Bleicher, Igor Polikarpov, Paul Webb, 2006, Journal of molecular biology.

Structural insights revealed by two novel THRB mutations

A. S. Nascimento, L. Maciel, M. Chiamolera, 2020, Endocrine.

Thermodynamic analysis of interactions of the Hsp90 with adenosine nucleotides: A comparative perspective.

F. R. de Moraes, A. S. Nascimento, C. Ramos, 2019, International journal of biological macromolecules.

Conservation and divergence of the G‐interfaces of Drosophila melanogaster septins

A. S. Nascimento, R. Garratt, H. Pereira, 2022, Cytoskeleton.

Structural Dynamics and Perspectives of Vitamin B6 Biosynthesis Enzymes in Plasmodium: Advances and Open Questions

C. Betzel, C. Wrenger, N. Ullah, 2021, Frontiers in Cellular and Infection Microbiology.

Structural and molecular dynamics investigations of ligand stabilization via secondary binding site interactions in Paenibacillus xylanivorans GH11 xylanase

I. Polikarpov, A. S. Nascimento, S. Ghio, 2021, Computational and structural biotechnology journal.

Statistical coupling analysis of aspartic proteinases based on crystal structures of the Trichoderma reesei enzyme and its complex with pepstatin A.

A. Wlodawer, A. Gustchina, I. Polikarpov, 2008, Journal of Molecular Biology.

Crystal structure and statistical coupling analysis of highly glycosylated peroxidase from royal palm tree (Roystonea regia).

V. Shnyrov, J. Calvete, L. Sanz, 2010, Journal of structural biology.

Structural requirement for PPARgamma binding revealed by a meta analysis of holo-crystal structures.

A. S. Nascimento, 2010, Biochimie.