D. Gordon

Energy functions for protein design.

S. A. Marshall, S L Mayo, Shannon A. Marshall, 1999, Current opinion in structural biology.

Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design.

Christopher A. Voigt, S. L. Mayo, C. Voigt, 2000, Journal of molecular biology.

Exact rotamer optimization for protein design

D. Benjamin Gordon, Geoffrey K. Hom, Stephen L. Mayo, 2003, J. Comput. Chem..

Sequence analysis A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data

D. Gifford, R. Young, E. Fraenkel, 2006 .

Branch-and-terminate: a combinatorial optimization algorithm for protein design.

D B Gordon, S L Mayo, S. L. Mayo, 1999, Structure.