J. Kim

发表

Psychrophilicity of Bacillus psychrosaccharolyticus: A proteomic study

G. Jung, J. Seo, Hyejin Kim, 2004, Proteomics.

Genome‐wide identification of the subcellular localization of the Escherichia coli B proteome using experimental and computational methods

Jeong Wook Lee, S. Lee, C. Hur, 2011, Proteomics.

Autophagic Inhibition via Lysosomal Integrity Dysfunction Leads to Antitumor Activity in Glioma Treatment

H. Kwon, J. Kim, J. Yoo, 2020, Cancers.

Autophagic Inhibition via Lysosomal Integrity Dysfunction Leads to Antitumor Activity in Glioma Treatment

H. Kwon, J. Kim, J. Yoo, 2020, Cancers.

Efficient prefractionation of low‐abundance proteins in human plasma and construction of a two‐dimensional map

Min-Seok Kwon, J. Cho, J. Kim, 2005, Proteomics.

Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2‐DE/MS and cleavable isotope‐coded affinity tag analysis

J. Kim, J. Yoo, S. Yun, 2006, Proteomics.

Chromosome 11-centric human proteome analysis of human brain hippocampus tissue.

I. Ferrer, R. Ravid, W. Hancock, 2013, Journal of proteome research.

Bioinformatic Prediction of Gene Ontology Terms of Uncharacterized Proteins from Chromosome 11.

Hyejin Kim, J. Kim, J. Yoo, 2020, Journal of proteome research.

Targeted Mass Spectrometric Approach for Biomarker Discovery and Validation with Nonglycosylated Tryptic Peptides from N-linked Glycoproteins in Human Plasma*

J. Kim, J. Yoo, Y. Paik, 2011, Molecular & Cellular Proteomics.

Isomer separation of sialylated O- and N-linked glycopeptides using reversed-phase LC-MS/MS at high temperature.

J. Kim, J. Yoo, Gun Wook Park, 2019, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Computational Classification of Core and Outer Fucosylation of N-Glycoproteins in Human Plasma Using Collision Induced Dissociation in Mass Spectrometry.

J. Kim, J. Yoo, Ju Yeon Lee, 2020, Rapid communications in mass spectrometry : RCM.

Characterization of Site-Specific N-Glycopeptide Isoforms of α-1-Acid Glycoprotein from an Interlaboratory Study Using LC-MS/MS.

S. Y. Kim, J. Kim, J. Yoo, 2016, Journal of proteome research.

Characterization of Site-Speci fi c N ‐ Glycopeptide Isoforms of α ‐ 1-Acid Glycoprotein from an Interlaboratory Study Using LC − MS / MS

S. Y. Kim, J. Kim, J. Yoo, 2016 .

MRM validation of targeted nonglycosylated peptides from N-glycoprotein biomarkers using direct trypsin digestion of undepleted human plasma.

J. Kim, J. Yoo, Ju Yeon Lee, 2014, Journal of proteomics.

Analytical Methods for Proteome Data Obtained from SDS-PAGE Multi-dimensional Separation and Mass Spectrometry

J. Kim, J. Yoo, K. Kwon, 2010 .

Community Evaluation of Glycoproteomics Informatics Solutions Reveals High-Performance Search Strategies of Serum N- and O-Glycopeptide Data

Nichollas E. Scott, Toan K. Phung, Cassandra L. Pegg, 2021, bioRxiv.

Proteomics Data Analysis using Representative Database

J. Kim, J. Yoo, ksbsb ibc, 2007 .

Designation of fingerprint glycopeptides for targeted glycoproteomic analysis of serum haptoglobin: insights into gastric cancer biomarker discovery

J. Kim, Jin Young Kim, H. An, 2018, Analytical and Bioanalytical Chemistry.

Parallel reaction monitoring with multiplex immunoprecipitation of N-glycoproteins in human serum for detection of hepatocellular carcinoma

J. Kim, J. Yoo, H. An, 2019, Analytical and Bioanalytical Chemistry.

Guanidination of lysine residue improves the sensitivity and facilitates the interpretation of free radical initiated peptide sequencing (FRIPS) mass spectrometry results

Bongjin Moon, J. Kim, H. Oh, 2015 .

BMDMS-NP: A comprehensive ESI-MS/MS spectral library of natural compounds.

K. No, J. Kim, J. Yoo, 2020, Phytochemistry.

Utility of electrophoretically derived protein mass estimates as additional constraints in proteome analysis of human serum based on MS/MS analysis

J. Kim, J. Yoo, Y. Paik, 2005, Proteomics.

NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods*

Erdmann Rapp, David J. Harvey, Stephen E. Stein, 2019, Molecular & Cellular Proteomics.

Direct analysis of site-specific N-glycopeptides of serological proteins in dried blood spot samples

J. Kim, J. Yoo, Ju Yeon Lee, 2017, Analytical and Bioanalytical Chemistry.

Identification and Validation of VEGFR2 Kinase as a Target of Voacangine by a Systematic Combination of DARTS and MSI

H. Kwon, G. Marko‐Varga, M. Rezeli, 2020, Biomolecules.

Quantitative analysis of low-abundance serological proteins with peptide affinity-based enrichment and pseudo-multiple reaction monitoring by hybrid quadrupole time-of-flight mass spectrometry.

J. Kim, J. Yoo, Ju Yeon Lee, 2015, Analytica chimica acta.

Alteration in the glycan pattern of pilin in a nonmotile mutant of Synechocystis sp. PCC 6803

J. S. Lee, J. Kim, J. Yoo, 2009, Proteomics.

Human Microglial Cells Synthesize Albumin in Brain

S. Paek, Sung‐Min Ahn, Deokhoon Kim, 2008, PloS one.

Identification of trimethylation at C-terminal lysine of pilin in the cyanobacterium Synechocystis PCC 6803.

J. Kim, J. Yoo, K. Park, 2011, Biochemical and Biophysical Research Communications - BBRC.

Prediction of liquid chromatography retention times of erectile dysfunction drugs and analogues using chemometric approaches

Jongki Hong, J. Kim, H. Oh, 2017 .

Parallel analysis of antimicrobial activities in microbial community by SSCP based on CE

M. Oh, Y. S. Park, G. Shin, 2007, Electrophoresis.

Selective Identification of Alpha Galactosyl Epitopes in N-Glycoproteins using Characteristic Fragment Ions from Higher-energy Collisional Dissociation.

J. Ko, J. Kim, J. Yoo, 2020, Analytical chemistry.

Mass spectrometry analysis of glycoprotein biomarkers in human blood of hepatocellular carcinoma

J. Kim, J. Yoo, Kwang Hoe Kim, 2019, Expert review of proteomics.

Absolute Quantification of N-glycosylation of Alpha-fetoprotein using Parallel Reaction Monitoring with Stable Isotope-Labeled N-Glycopeptide as an Internal Standard.

J. Kim, J. Yoo, Soo-Youn Lee, 2020, Analytical chemistry.

QUANTITATIVE MASS SPECTROMETRIC ANALYSIS OF GLYCOPROTEINS COMBINED WITH ENRICHMENT METHODS

J. Kim, J. Yoo, Y. Ahn, 2014, Mass spectrometry reviews.

In-depth analysis of site-specific N-glycosylation in vitronectin from human plasma by tandem mass spectrometry with immunoprecipitation

J. Kim, J. Yoo, Ju Yeon Lee, 2014, Analytical and Bioanalytical Chemistry.

Analysis of fucosylation in liver-secreted N-glycoproteins from human hepatocellular carcinoma plasma using liquid chromatography with tandem mass spectrometry

J. Kim, J. Yoo, Seungho Lee, 2016, Analytical and Bioanalytical Chemistry.

SAAVpedia: identification, functional annotation, and retrieval of single amino acid variants for proteogenomic interpretation.

Hyejin Kim, J. Kim, J. Yoo, 2019, Journal of proteome research.

Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases.

J. Yates, Tao Xu, J. Kim, 2015, Journal of proteome research.

Activation of mitochondrial TUFM ameliorates metabolic dysregulation through coordinating autophagy induction

H. Kwon, J. Kim, J. Yoo, 2021, Communications Biology.

Regulation of hypoxia responses by flavin adenine dinucleotide‐dependent modulation of HIF‐1α protein stability

J. Kim, Y. Yeom, Dong Chul Lee, 2017, The EMBO journal.

DNA Polymerase Alpha Subunit B Is a Binding Protein for Erlotinib Resistance in Non-Small Cell Lung Cancer

H. Kwon, G. Marko‐Varga, J. Kim, 2020, Cancers.

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

Nichollas E. Scott, Toan K. Phung, Cassandra L. Pegg, 2021, Nature Methods.

Quantitative Phosphoproteomics of the Human Neural Stem Cell Differentiation into Oligodendrocyte by Mass Spectrometry

J. Kim, J. Yoo, Seung U. Kim, 2012 .

Dynamic identification of phosphopeptides using immobilized metal ion affinity chromatography enrichment, subsequent partial beta-elimination/chemical tagging and matrix-assisted laser desorption/ionization mass spectrometric analysis.

S. Ryu, J. Kim, J. Yoo, 2004, Rapid communications in mass spectrometry : RCM.

FK506, an Immunosuppressive Drug, Induces Autophagy by Binding to the V-ATPase Catalytic Subunit A in Neuronal Cells.

H. Kwon, G. Marko‐Varga, J. Kim, 2017, Journal of proteome research.

Flashlight into the Function of Unannotated C11orf52 using Affinity Purification Mass Spectrometry.

J. Kim, J. Yoo, Heeyoun Hwang, 2021, Journal of proteome research.

Quantitative proteomic analysis of cell wall and plasma membrane fractions from multidrug-resistant Acinetobacter baumannii.

J. Kim, J. Yoo, Je Chul Lee, 2011, Journal of proteome research.

O-GlcNAcylation of eIF2α regulates the phospho-eIF2α-mediated ER stress response.

J. Cho, J. Kim, J. Yoo, 2015, Biochimica et biophysica acta.

Pressure Cycling Technology-assisted Protein Digestion for Efficient Proteomic Analysis

J. Kim, J. Yoo, K. Kwon, 2011 .

Human plasma proteome analysis by reversed sequence database search and molecular weight correlation based on a bacterial proteome analysis

J. Kim, J. Yoo, Y. Paik, 2006, Proteomics.

Amyloid-beta-activated human microglial cells through ER-resident proteins.

Seung-Up Kim, J. Kim, Bonghee Lee, 2015, Journal of proteome research.

A Multidimensional System for Phosphopeptide Analysis Using TiO 2 Enrichment and Ion-exchange Chromatography with Mass Spectrometry

J. Kim, J. Yoo, H. Oh, 2012 .

In‐depth proteomics approach of secretome to identify novel biomarker for sepsis in LPS‐stimulated endothelial cells

J. Kim, Wonhwa Lee, J. Bae, 2015, Electrophoresis.

Comprehensive Characterization of Biotherapeutics by Selective Capturing of Highly Acidic Glycans Using Stepwise PGC-SPE and LC/MS/MS.

J. Kim, J. Y. Park, H. An, 2019, Analytical chemistry.

Island clustering analysis for the comparison of the membrane and the soluble protein fractions of human brain proteome

J. Kim, J. Yoo, K. Kwon, 2008, Proteomics.

Differential Protein Quantitation in Mouse Neuronal Cell Lines using Amine- Reactive Isobaric Tagging Reagents with Tandem Mass Spectrometry

J. Kim, J. Yoo, H. Oh, 2010 .

Silica-coated magnetic-nanoparticle-induced cytotoxicity is reduced in microglia by glutathione and citrate identified using integrated omics

Balachandran Manavalan, T. Shin, Gwang Lee, 2021, Particle and fibre toxicology.

Profiling human brain proteome by multi‐dimensional separations coupled with MS

Young Mok Park, Jin Young Kim, Jong Shin Yoo, 2006, Proteomics.

Integrated GlycoProteome Analyzer (I-GPA) for Automated Identification and Quantitation of Site-Specific N-Glycosylation

Jin Young Kim, Jong Shin Yoo, Young-Ki Paik, 2016, Scientific Reports.

Large-scale isotype-specific quantification of Serum amyloid A 1/2 by multiple reaction monitoring in crude sera.

Hojoong Kim, J. Kim, J. Yoo, 2012, Journal of proteomics.

Protein Analysis Using a Combination of an Online Monolithic Trypsin Immobilized Enzyme Reactor and Collisionally-Activated Dissociation/Electron Transfer Dissociation Dual Tandem Mass Spectrometry

J. Kim, H. Oh, Young Hwan Kim, 2012 .

Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry.

Jong Shin Yoo, Young-Ki Paik, Jin Young Kim, 2018, Journal of proteome research.

Characterization of RNase-like major storage protein from the ginseng root by proteomic approach.

J. Kim, J. Yoo, S. Kweon, 2004, Journal of plant physiology.

Proteome analysis of hairy root from Panax ginseng C. A. Meyer using peptide fingerprinting, internal sequencing and expressed sequence tag data

Young Mok Park, Jin Young Kim, Jong Shin Yoo, 2003, Proteomics.

Proteome Data Analysis of Hairy Root of Panax ginseng : Use of Expressed Sequence Tag Data of Ginseng for the Protein Identification

Deok-Chun Yang, J. Kim, J. Yoo, 2002 .

Probing lysine acetylation with a modification-specific marker ion using high-performance liquid chromatography/electrospray-mass spectrometry with collision-induced dissociation.

Jin Young Kim, Jong Shin Yoo, Ho Jeong Kwon, 2002, Analytical chemistry.

Proteomic characterization of the Pseudomonas putida KT2440 global response to a monocyclic aromatic compound by iTRAQ analysis and 1DE-MudPIT.

J. Kim, J. Yoo, S. Leem, 2011, Journal of proteomics.

Integrated Proteomic Pipeline Using Multiple Search Engines for a Proteogenomic Study with a Controlled Protein False Discovery Rate.

John R Yates, Young Mok Park, Jin Young Kim, 2016, Journal of proteome research.

Direct Monitoring of Fucosylated Glycopeptides of Alpha‐Fetoprotein in Human Serum for Early Hepatocellular Carcinoma by Liquid Chromatography–Tandem Mass Spectrometry with Immunoprecipitation

J. Kim, J. Yoo, Soo-Youn Lee, 2018, Proteomics. Clinical applications.

Proteomic Analysis of the Meniscus Cartilage in Osteoarthritis

J. Kim, Soo-Youn Lee, Ju Yeon Lee, 2021, International journal of molecular sciences.

Dynamic MRM Measurements of Multi-Biomarker Proteins by Triple- Quadrupole Mass Spectrometry with Nanoflow HPLC-Microfluidics Chip

J. Kim, J. Yoo, Ju Yeon Lee, 2010 .

Protein phosphorylation analysis by site-specific arginine-mimic labeling in gel electrophoresis and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

J. Kim, J. Yoo, H. Kang, 2007, Analytical biochemistry.

Next Generation Proteomic Pipeline for Chromosome-Based Proteomic Research Using NeXtProt and GENCODE Databases.

J. Yates, J. Kim, J. Yoo, 2017, Journal of proteome research.

Classification of Mucin-Type O-Glycopeptides Using Higher-Energy Collisional Dissociation in Mass Spectrometry.

Jin Young Kim, Jong Shin Yoo, Hyun Kyoung Lee, 2020, Analytical chemistry.

Measuring fucosylated alpha‐fetoprotein in hepatocellular carcinoma: A comparison of μTAS and parallel reaction monitoring

J. Kim, J. Yoo, Je-Hyun Baek, 2021, Proteomics. Clinical applications.

Machine Learning Classifies Core and Outer Fucosylation of N-Glycoproteins Using Mass Spectrometry

J. Ko, J. Kim, J. Yoo, 2020, Scientific Reports.